Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000411.1

Orthogroup ID

OG0016556

Physical Location & Seq

Genomic Coordinates Reverse (-)

17356 .. 21841

Gene Structure 4486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000411.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggccgagctatctcctgaagtaccagtccatgttctcgtcgtcgacgactgcttggttgaccgcaaaatcgttgacaagctcctcaaggcatccgcctttaaggttactactgtagaaagtggaaaaaaagcgctagaggttcttggaatggaagaagagaagcttgacaagccaagtgctaaagatcatgatgttaacataatcctcactgactactgtatgcctgagatgaatggccatgatcttctagttgctgtaaaggaggacagccgcatgaaatcaattccagtggtcataatgtcatctgaatttaatccacagagaatcagcaggtatttgcttccattgcaatctgttattgcttgtattagtctttggtgtctcacagatggtgctcaagaattcttgcagaaacctctgaaagtgaaagacttggagaagttacgaagctatgtaaagccagcagttccagtatccaaagtgggaacaaaacgaaaagctctagttgatctgatgccagaaagtaatgaagcagaaaggcggccttgccctgctggagttgctgttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0022622 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048830 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

191

Amino Acids

21.17

Weight (kDa)

6.33

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00450 FvH4_2g00450
rosa_chinensis	RchiOBHm_Chr6g0250401
rosa_laevigata	RLG00000015542
rosa_multiflora	Rmu_sc0000411.1_g000003 Rmu_sc0001209.1_g000037
rosa_roxburghii	Rroxscaffold_7G00217260
rosa_rugosa	Rorug05G0496100 Rorug05G0496200 Rorug05G0496300
rosa_samantha	Rh6AG005700 Rh6BG005000
rosa_wichuraiana	Rw6G000630 Rw6G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	4 cut(s)	64, 96, 274, 544
AcoI	YGGCCR	2 cut(s)	3, 238
AcsI	RAATTY	2 cut(s)	311, 404
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	24
AfeI	AGCGCT	1 cut(s)	135
AluBI	AGCT	5 cut(s)	10, 82, 166, 453, 503
AluI	AGCT	5 cut(s)	10, 82, 166, 453, 503
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	135
AoxI	GGCC	3 cut(s)	3, 238, 545
ApoI	RAATTY	2 cut(s)	311, 404
AspLEI	GCGC	1 cut(s)	136
BalI	TGGCCA	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	400
BccI	CCATC	1 cut(s)	386
BciVI	GTATCC	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	3 cut(s)	137, 251, 506
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	274, 545
BlsI	GCNGC	2 cut(s)	275, 546
BmsI	GCATC	2 cut(s)	101, 507
BpuEI	CTTGAG	2 cut(s)	71, 384
BsaXI	ACNNNNNCTCC	1 cut(s)	552
Bse1I	ACTGG	3 cut(s)	26, 290, 473
Bse3DI	GCAATG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	3 cut(s)	26, 290, 473
BseRI	GAGGAG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	5, 240, 547
BsiHKAI	GWGCWC	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	389
BsnI	GGCC	3 cut(s)	5, 240, 547
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	3 cut(s)	187, 244, 511
BspACI	CCGC	4 cut(s)	64, 96, 274, 544
BspANI	GGCC	3 cut(s)	5, 240, 547
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	26, 290, 473
BssMI	GATC	3 cut(s)	187, 244, 511
Bst4CI	ACNGT	2 cut(s)	115, 221
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	190, 247, 514
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	3 cut(s)	187, 244, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 349, 563
BstSFI	CTRYAG	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	3 cut(s)	5, 240, 547
BtsCI	GGATG	1 cut(s)	92
BtsIMutI	CAGTG	2 cut(s)	210, 297
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	465
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	4 cut(s)	32, 191, 242, 277
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	3 cut(s)	189, 246, 513
DpnII	GATC	3 cut(s)	187, 244, 511
EaeI	YGGCCR	2 cut(s)	3, 238
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	85
Eco47III	AGCGCT	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	404
FaeI	CATG	4 cut(s)	35, 194, 245, 280
FaiI	YATR	9 cut(s)	33, 192, 203, 224, 243, 278, 299, 456, 574
FalI	AAGNNNNNCTT	4 cut(s)	150, 182, 532, 564
FatI	CATG	4 cut(s)	31, 190, 241, 276
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	274, 545
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	274, 545
FspBI	CTAG	3 cut(s)	137, 251, 506
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	2 cut(s)	274, 545
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	3 cut(s)	5, 240, 547
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	4 cut(s)	35, 194, 245, 280
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	4 cut(s)	46, 61, 76, 199
HindII	GTYRAC	4 cut(s)	46, 61, 76, 199
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	327
HpaI	GTTAAC	1 cut(s)	199
Hpy166II	GTNNAC	4 cut(s)	46, 61, 76, 199
Hpy188I	TCNGA	3 cut(s)	310, 423, 516
Hpy188III	TCNNGA	3 cut(s)	17, 191, 401
Hpy8I	GTNNAC	4 cut(s)	46, 61, 76, 199
Hpy99I	CGWCG	3 cut(s)	44, 47, 50
HpyCH4III	ACNGT	2 cut(s)	115, 221
HpyCH4V	TGCA	3 cut(s)	352, 412, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 349, 563
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	35, 194, 245, 280
HspAI	GCGC	1 cut(s)	134
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	187, 244, 511
LmnI	GCTCC	1 cut(s)	87
LweI	GCATC	2 cut(s)	101, 507
MaeI	CTAG	3 cut(s)	137, 251, 506
MaeIII	GTNAC	2 cut(s)	106, 444
MalI	GATC	3 cut(s)	189, 246, 513
MboI	GATC	3 cut(s)	187, 244, 511
MboII	GAAGA	3 cut(s)	167, 170, 239
MhlI	GDGCHC	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	3 cut(s)	285, 311, 404
MluNI	TGGCCA	1 cut(s)	240
MnlI	CCTC	5 cut(s)	95, 133, 218, 259, 429
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	3 cut(s)	102, 198, 315
Msp20I	TGGCCA	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	172, 349, 563
NdeII	GATC	3 cut(s)	187, 244, 511
NlaIII	CATG	4 cut(s)	35, 194, 245, 280
NmeAIII	GCCGAG	1 cut(s)	31
PagI	TCATGA	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	2 cut(s)	275, 546
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	102, 198, 315
SatI	GCNGC	2 cut(s)	274, 545
Sau3AI	GATC	3 cut(s)	187, 244, 511
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	9 cut(s)	12, 84, 108, 144, 168, 338, 421, 455, 505
SfaNI	GCATC	2 cut(s)	101, 507
SfcI	CTRYAG	1 cut(s)	114
SgrDI	CGTCGACG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	86, 399
SmoI	CTYRAG	2 cut(s)	86, 399
Sse9I	AATT	3 cut(s)	285, 311, 404
SsiI	CCGC	4 cut(s)	64, 96, 274, 544
SspMI	CTAG	3 cut(s)	137, 251, 506
TaaI	ACNGT	2 cut(s)	115, 221
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	285, 311, 404
TauI	GCSGC	2 cut(s)	276, 547
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	3 cut(s)	102, 198, 315
Tru9I	TTAA	3 cut(s)	102, 198, 315
TscAI	CASTG	2 cut(s)	217, 297
TspDTI	ATGAA	3 cut(s)	248, 293, 546
TspRI	CASTG	2 cut(s)	217, 297
XapI	RAATTY	2 cut(s)	311, 404
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	3 cut(s)	137, 251, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.