Rw6G000700

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016556
Physical Location & Seq
Forward (+)
1150484 .. 1154070
3587 bp
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UTR
Exon/CDS
Intron
Rw6G000700.1

Sequence Viewer

Length: 501 bp
ATGAGCAATATTGATTCACCGGGTAGCGGCGTTGACTTCAAACGCATTGACACCTTCTTTCAATTATCTATACAAGTTACTACTGTAGAAAGTGGAAAAAAAGCGCTAGAGGTTCTTGGAATGGAAGAAGAGAAGCTTGACAAGCCAAGTGTTAAAGATCATGATGTTAACATAATCCTCACTGACTACTGTATGCCTGAGATGAATGGCCATGATCTTCTAGTTGCTGTAAAGGAGGACAGCCGCATGAAATCAATTCCGGTGGTCATAATGTCTTCTGAATTTAATCCACAGAGAATCAGCAGGTGTCTCACAGATGGTGCTCAAGAATTCTTGCAGAAACCTCTGAAAGTGAAAGACTTGGAGAAGTTACGAAGCTATGTAAAGCCAGCAGTTCCAGTACCCAAAGTGGGAACAAAACGAAAAGCTCTAGTTGATCTGATGCCAGAAAGTAATGAAGCAGAAAGGCGGCCTTGCCCTGCTGGAGTTGCTGTTGCATAA

Protein Analysis

166

Amino Acids

18.43

Weight (kDa)

6.16

Isoelectric Point (pI)

61.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 23 - 123 6e-14 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00450 FvH4_2g00450
rosa_chinensis RchiOBHm_Chr6g0250401
rosa_laevigata RLG00000015542
rosa_multiflora Rmu_sc0000411.1_g000003 Rmu_sc0001209.1_g000037
rosa_roxburghii Rroxscaffold_7G00217260
rosa_rugosa Rorug05G0496100 Rorug05G0496200 Rorug05G0496300
rosa_samantha Rh6AG005700 Rh6BG005000
rosa_wichuraiana Rw6G000630 Rw6G000700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 294
Acc36I ACCTGC 1 cut(s) 294
AciI CCGC 3 cut(s) 27, 244, 469
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 2 cut(s) 281, 329
AfaI GTAC 1 cut(s) 402
AfeI AGCGCT 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 26, 410
AgsI TTSAA 2 cut(s) 40, 62
AluBI AGCT 3 cut(s) 136, 378, 428
AluI AGCT 3 cut(s) 136, 378, 428
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 314
Aor51HI AGCGCT 1 cut(s) 105
AoxI GGCC 2 cut(s) 208, 470
ApoI RAATTY 2 cut(s) 281, 329
AspLEI GCGC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 9
BalI TGGCCA 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 325
BccI CCATC 1 cut(s) 311
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 3 cut(s) 107, 221, 431
BfmI CTRYAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 3 cut(s) 28, 244, 470
BlsI GCNGC 3 cut(s) 29, 245, 471
Bme1390I CCNGG 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 432
BpiI GAAGAC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 1 cut(s) 477
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 410
Bse1I ACTGG 1 cut(s) 398
BseLI CCNNNNNNNGG 2 cut(s) 26, 410
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 398
BshFI GGCC 2 cut(s) 210, 472
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 2 cut(s) 20, 260
BslI CCNNNNNNNGG 2 cut(s) 26, 410
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 2 cut(s) 210, 472
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 3 cut(s) 157, 214, 436
BspACI CCGC 3 cut(s) 27, 244, 469
BspANI GGCC 2 cut(s) 210, 472
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 294
BsrI ACTGG 1 cut(s) 398
BssMI GATC 3 cut(s) 157, 214, 436
Bst4CI ACNGT 2 cut(s) 85, 191
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 3 cut(s) 160, 217, 439
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 3 cut(s) 157, 214, 436
BstMWI GCNNNNNNNGC 2 cut(s) 142, 488
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 267
BsuRI GGCC 2 cut(s) 210, 472
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 390
CciI TCATGA 1 cut(s) 160
CfoI GCGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 401
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 3 cut(s) 161, 212, 247
CviJI RGCY 8 cut(s) 136, 145, 210, 243, 378, 388, 428, 472
CviKI_1 RGCY 8 cut(s) 136, 145, 210, 243, 378, 388, 428, 472
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 159, 216, 438
DpnII GATC 3 cut(s) 157, 214, 436
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco47III AGCGCT 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 329
FaeI CATG 3 cut(s) 164, 215, 250
FaiI YATR 9 cut(s) 71, 162, 173, 194, 213, 248, 269, 381, 499
FalI AAGNNNNNCTT 4 cut(s) 120, 152, 457, 489
FatI CATG 3 cut(s) 160, 211, 246
Fnu4HI GCNGC 3 cut(s) 28, 244, 470
Fsp4HI GCNGC 3 cut(s) 28, 244, 470
FspBI CTAG 3 cut(s) 107, 221, 431
GlaI GCGC 1 cut(s) 105
GluI GCNGC 3 cut(s) 28, 244, 470
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 2 cut(s) 210, 472
HapII CCGG 2 cut(s) 20, 260
HhaI GCGC 1 cut(s) 106
Hin1II CATG 3 cut(s) 164, 215, 250
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 2 cut(s) 34, 169
HindII GTYRAC 2 cut(s) 34, 169
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 2 cut(s) 14, 297
HpaI GTTAAC 1 cut(s) 169
HpaII CCGG 2 cut(s) 20, 260
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 34, 169
Hpy188I TCNGA 3 cut(s) 280, 348, 441
Hpy188III TCNNGA 2 cut(s) 161, 326
Hpy8I GTNNAC 2 cut(s) 34, 169
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 85, 191
HpyCH4V TGCA 2 cut(s) 337, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 488
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 3 cut(s) 164, 215, 250
HspAI GCGC 1 cut(s) 104
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 157, 214, 436
LpnPI CCDG 9 cut(s) 33, 210, 273, 289, 402, 411, 459, 468, 492
LweI GCATC 1 cut(s) 432
MaeI CTAG 3 cut(s) 107, 221, 431
MaeIII GTNAC 2 cut(s) 76, 369
MalI GATC 3 cut(s) 159, 216, 438
MboI GATC 3 cut(s) 157, 214, 436
MboII GAAGA 4 cut(s) 137, 140, 209, 267
MhlI GDGCHC 1 cut(s) 325
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 4 cut(s) 62, 255, 281, 329
MluNI TGGCCA 1 cut(s) 210
MnlI CCTC 4 cut(s) 103, 188, 229, 354
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MseI TTAA 3 cut(s) 153, 168, 285
Msp20I TGGCCA 1 cut(s) 210
MspI CCGG 2 cut(s) 20, 260
MspR9I CCNGG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 142, 488
NciI CCSGG 1 cut(s) 21
NdeII GATC 3 cut(s) 157, 214, 436
NlaIII CATG 3 cut(s) 164, 215, 250
PagI TCATGA 1 cut(s) 160
PaqCI CACCTGC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 14, 297
PkrI GCNGC 3 cut(s) 29, 245, 471
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
SaqAI TTAA 3 cut(s) 153, 168, 285
SatI GCNGC 3 cut(s) 28, 244, 470
Sau3AI GATC 3 cut(s) 157, 214, 436
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 325
SetI ASST 7 cut(s) 56, 114, 138, 308, 346, 380, 430
SfaNI GCATC 1 cut(s) 432
SfcI CTRYAG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 324
SmoI CTYRAG 1 cut(s) 324
Sse9I AATT 4 cut(s) 62, 255, 281, 329
SsiI CCGC 3 cut(s) 27, 244, 469
SspI AATATT 1 cut(s) 10
SspMI CTAG 3 cut(s) 107, 221, 431
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 85, 191
TasI AATT 4 cut(s) 62, 255, 281, 329
TauI GCSGC 3 cut(s) 30, 246, 472
TfiI GAWTC 2 cut(s) 14, 297
Tru1I TTAA 3 cut(s) 153, 168, 285
Tru9I TTAA 3 cut(s) 153, 168, 285
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 3 cut(s) 218, 263, 471
TspRI CASTG 1 cut(s) 187
XapI RAATTY 2 cut(s) 281, 329
XspI CTAG 3 cut(s) 107, 221, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.