Rroxscaffold_7G00217260

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016556
Physical Location & Seq
Reverse (-)
67746145 .. 67751246
5102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217260.1

Sequence Viewer

Length: 534 bp
ATGGCCGAGCTATCTCCTCCTCAAGTACCTGTCCATGTTCTCGTCGTCGACGACTGCTTGGTTGACCGCAAAATCGTTGACAAGCTCCTCAAAGCATCCGCCTTTAAAGTTACTACTGTAGAAAGTGGAAAAAAAGCGCTAGAGGTTCTTGGAATGGAAGAAGAGAAGTGTGACAAGCCTAGTGTTAAAGATCATGATGTTAACATAATCCTCACTGACTACTGTATGCCTGAGATGAATGGCCATGATCTTCTAGTTGCTGTAAAGGAGGACAGCCGCATGAAATCAATTCCGGTGGTCATAATGTCTTCTGAATTTAATCCACAGAGAATCAGCAGGTGTCTCACAGATGGTGCTCAAGAATTCTTGCAGAAACCTCTGAAAGTGAAAGACTTGGAGAAGTTACGAAGCTATGTAAAGGCAGCAGTTCCAGTACCCAAAGTAGGAACAAAACGAAAAGCTCTAGTTGATCTGATGCCAGATAGTAATGAAGCAGAAAGGCGGCCTTGCCCTGCTGGAGTTGCTGTTGCATAA

Protein Analysis

177

Amino Acids

19.55

Weight (kDa)

6.83

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 13 - 134 1.2e-18 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00450 FvH4_2g00450
rosa_chinensis RchiOBHm_Chr6g0250401
rosa_laevigata RLG00000015542
rosa_multiflora Rmu_sc0000411.1_g000003 Rmu_sc0001209.1_g000037
rosa_roxburghii Rroxscaffold_7G00217260
rosa_rugosa Rorug05G0496100 Rorug05G0496200 Rorug05G0496300
rosa_samantha Rh6AG005700 Rh6BG005000
rosa_wichuraiana Rw6G000630 Rw6G000700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 327
Acc36I ACCTGC 1 cut(s) 327
AccI GTMKAC 1 cut(s) 48
AciI CCGC 4 cut(s) 67, 99, 277, 502
AcoI YGGCCR 2 cut(s) 3, 241
AcsI RAATTY 2 cut(s) 314, 362
AfaI GTAC 2 cut(s) 27, 435
AfeI AGCGCT 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 443
AluBI AGCT 4 cut(s) 10, 85, 411, 461
AluI AGCT 4 cut(s) 10, 85, 411, 461
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 347
Aor51HI AGCGCT 1 cut(s) 138
AoxI GGCC 3 cut(s) 3, 241, 503
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 314, 362
AspLEI GCGC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 1 cut(s) 434
BccI CCATC 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 4 cut(s) 140, 180, 254, 464
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 327
BisI GCNGC 3 cut(s) 277, 423, 503
BlsI GCNGC 3 cut(s) 278, 424, 504
BmsI GCATC 2 cut(s) 104, 465
BpiI GAAGAC 1 cut(s) 300
BpuEI CTTGAG 2 cut(s) 6, 342
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 1 cut(s) 510
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 431
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 431
BseRI GAGGAG 3 cut(s) 6, 9, 77
BseXI GCAGC 1 cut(s) 434
BshFI GGCC 3 cut(s) 5, 243, 505
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 347
BsnI GGCC 3 cut(s) 5, 243, 505
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 3 cut(s) 190, 247, 469
BspACI CCGC 4 cut(s) 67, 99, 277, 502
BspANI GGCC 3 cut(s) 5, 243, 505
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 431
BssMI GATC 3 cut(s) 190, 247, 469
Bst4CI ACNGT 2 cut(s) 118, 224
Bst6I CTCTTC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 3 cut(s) 193, 250, 472
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 3 cut(s) 190, 247, 469
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 1 cut(s) 300
BsuRI GGCC 3 cut(s) 5, 243, 505
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 327
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 26, 434
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 4 cut(s) 35, 194, 245, 280
CviJI RGCY 9 cut(s) 5, 10, 85, 178, 243, 276, 411, 461, 505
CviKI_1 RGCY 9 cut(s) 5, 10, 85, 178, 243, 276, 411, 461, 505
CviQI GTAC 2 cut(s) 26, 434
DdeI CTNAG 1 cut(s) 231
DpnI GATC 3 cut(s) 192, 249, 471
DpnII GATC 3 cut(s) 190, 247, 469
DraI TTTAAA 1 cut(s) 106
EaeI YGGCCR 2 cut(s) 3, 241
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 362
FaeI CATG 4 cut(s) 38, 197, 248, 283
FaiI YATR 9 cut(s) 36, 195, 206, 227, 246, 281, 302, 414, 532
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FatI CATG 4 cut(s) 34, 193, 244, 279
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 277, 423, 503
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 277, 423, 503
FspBI CTAG 4 cut(s) 140, 180, 254, 464
GlaI GCGC 1 cut(s) 138
GluI GCNGC 3 cut(s) 277, 423, 503
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 3 cut(s) 5, 243, 505
HapII CCGG 1 cut(s) 293
HhaI GCGC 1 cut(s) 139
Hin1II CATG 4 cut(s) 38, 197, 248, 283
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 4 cut(s) 49, 64, 79, 202
HindII GTYRAC 4 cut(s) 49, 64, 79, 202
HinfI GANTC 1 cut(s) 330
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 1 cut(s) 293
Hpy166II GTNNAC 4 cut(s) 49, 64, 79, 202
Hpy188I TCNGA 3 cut(s) 313, 381, 474
Hpy188III TCNNGA 2 cut(s) 194, 359
Hpy8I GTNNAC 4 cut(s) 49, 64, 79, 202
Hpy99I CGWCG 3 cut(s) 47, 50, 53
HpyCH4III ACNGT 2 cut(s) 118, 224
HpyCH4V TGCA 2 cut(s) 370, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 4 cut(s) 38, 197, 248, 283
HspAI GCGC 1 cut(s) 137
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 190, 247, 469
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 8 cut(s) 42, 243, 306, 322, 444, 492, 501, 525
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 2 cut(s) 104, 465
MaeI CTAG 4 cut(s) 140, 180, 254, 464
MaeIII GTNAC 3 cut(s) 109, 170, 402
MalI GATC 3 cut(s) 192, 249, 471
MboI GATC 3 cut(s) 190, 247, 469
MboII GAAGA 4 cut(s) 170, 173, 242, 300
MhlI GDGCHC 1 cut(s) 358
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 3 cut(s) 288, 314, 362
MluNI TGGCCA 1 cut(s) 243
MnlI CCTC 7 cut(s) 27, 30, 98, 136, 221, 262, 387
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 4 cut(s) 105, 186, 201, 318
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 521
NdeII GATC 3 cut(s) 190, 247, 469
NlaIII CATG 4 cut(s) 38, 197, 248, 283
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 170
PagI TCATGA 1 cut(s) 193
PaqCI CACCTGC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 3 cut(s) 278, 424, 504
RsaI GTAC 2 cut(s) 27, 435
RsaNI GTAC 2 cut(s) 26, 434
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 105, 186, 201, 318
SatI GCNGC 3 cut(s) 277, 423, 503
Sau3AI GATC 3 cut(s) 190, 247, 469
SduI GDGCHC 1 cut(s) 358
SetI ASST 8 cut(s) 12, 31, 87, 147, 341, 379, 413, 463
SfaNI GCATC 2 cut(s) 104, 465
SfcI CTRYAG 1 cut(s) 117
SgrDI CGTCGACG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 21, 357
SmoI CTYRAG 2 cut(s) 21, 357
Sse9I AATT 3 cut(s) 288, 314, 362
SsiI CCGC 4 cut(s) 67, 99, 277, 502
SspMI CTAG 4 cut(s) 140, 180, 254, 464
TaaI ACNGT 2 cut(s) 118, 224
TaqI TCGA 1 cut(s) 48
TasI AATT 3 cut(s) 288, 314, 362
TauI GCSGC 2 cut(s) 279, 505
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 4 cut(s) 105, 186, 201, 318
Tru9I TTAA 4 cut(s) 105, 186, 201, 318
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 251, 296, 504
TspRI CASTG 1 cut(s) 220
XapI RAATTY 2 cut(s) 314, 362
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 4 cut(s) 140, 180, 254, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.