Rorug05G0496100

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016556
Physical Location & Seq
Forward (+)
67797124 .. 67797898
775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0496100.1

Sequence Viewer

Length: 339 bp
ATGGCCATCGTTCCGTCTGAGTCGAGATCAGCGATGACCAAGCTCTCGACGACCTCTTCTCTCGGCTCTGATGTCTTCATCGTCCTCCTCCGCTCTCTCGTCATCCTCGGCCTTCTCTTCCGCCAAATGAACATCTCTAGCCAGGGTTCTGTTATTTCTAATGGTAGAAAACGCTCAGCTGATAGAAATTTCAATAATGAAAGGGGGTTGAAGGCCCAGAGTGAGTTGGATATGTGCGCCGAGGGGTTAGAGGTGAATAGCCTGAGTAGGCTGATGGGTTCGGAGGCTGTGAATTACACTTGTGTGGAGTGGAGGAGTTGTATGAGAAGATGCTTGTGA

Protein Analysis

112

Amino Acids

12.38

Weight (kDa)

9.2

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00450 FvH4_2g00450
rosa_chinensis RchiOBHm_Chr6g0250401
rosa_laevigata RLG00000015542
rosa_multiflora Rmu_sc0000411.1_g000003 Rmu_sc0001209.1_g000037
rosa_roxburghii Rroxscaffold_7G00217260
rosa_rugosa Rorug05G0496100 Rorug05G0496200 Rorug05G0496300
rosa_samantha Rh6AG005700 Rh6BG005000
rosa_wichuraiana Rw6G000630 Rw6G000700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 93
AciI CCGC 2 cut(s) 91, 121
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 187
AgsI TTSAA 2 cut(s) 193, 211
AjnI CCWGG 1 cut(s) 141
AleI CACNNNNGTG 1 cut(s) 302
AluBI AGCT 2 cut(s) 43, 179
AluI AGCT 2 cut(s) 43, 179
AoxI GGCC 3 cut(s) 3, 109, 213
ApoI RAATTY 1 cut(s) 187
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 265
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 67
BccI CCATC 2 cut(s) 14, 268
BciT130I CCWGG 1 cut(s) 143
BfaI CTAG 1 cut(s) 138
BlpI GCTNAGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 106, 142, 240
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 3 cut(s) 106, 142, 240
BseGI GGATG 1 cut(s) 102
BseMII CTCAG 3 cut(s) 9, 189, 254
BseRI GAGGAG 2 cut(s) 77, 328
BshFI GGCC 3 cut(s) 5, 111, 215
BsnI GGCC 3 cut(s) 5, 111, 215
Bsp143I GATC 1 cut(s) 26
Bsp1720I GCTNAGC 1 cut(s) 175
BspACI CCGC 2 cut(s) 91, 121
BspANI GGCC 3 cut(s) 5, 111, 215
BspCNI CTCAG 3 cut(s) 10, 188, 255
BsrBI CCGCTC 1 cut(s) 93
BssECI CCNNGG 3 cut(s) 106, 142, 240
BssMI GATC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 61, 122
BstDEI CTNAG 3 cut(s) 18, 175, 263
BstF5I GGATG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 1 cut(s) 29
BstMBI GATC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 67
BsuRI GGCC 3 cut(s) 5, 111, 215
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 102
CfoI GCGC 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 18, 175, 263
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 61, 122
EarI CTCTTC 2 cut(s) 61, 122
EciI GGCGGA 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 141
FaiI YATR 2 cut(s) 233, 323
FokI GGATG 1 cut(s) 89
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 238
HaeIII GGCC 3 cut(s) 5, 111, 215
HhaI GCGC 1 cut(s) 239
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HinfI GANTC 1 cut(s) 20
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 3 cut(s) 19, 70, 283
Hpy188III TCNNGA 2 cut(s) 24, 46
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 122, 205
HpyF3I CTNAG 3 cut(s) 18, 175, 263
HspAI GCGC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 26
LpnPI CCDG 4 cut(s) 128, 155, 230, 275
LweI GCATC 1 cut(s) 320
MaeI CTAG 1 cut(s) 138
MalI GATC 1 cut(s) 28
MbiI CCGCTC 1 cut(s) 93
MboI GATC 1 cut(s) 26
MboII GAAGA 4 cut(s) 48, 67, 109, 339
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 187, 292
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 8 cut(s) 64, 95, 98, 116, 235, 244, 277, 306
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
NdeII GATC 1 cut(s) 26
NmeAIII GCCGAG 3 cut(s) 42, 87, 265
OliI CACNNNNGTG 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspPI GGNCC 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 302
Sau3AI GATC 1 cut(s) 26
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 143
SetI ASST 4 cut(s) 45, 56, 181, 255
SfaNI GCATC 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 2 cut(s) 187, 292
SsiI CCGC 2 cut(s) 91, 121
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 141
TaqI TCGA 2 cut(s) 23, 47
TasI AATT 2 cut(s) 187, 292
TspDTI ATGAA 3 cut(s) 67, 143, 213
XapI RAATTY 1 cut(s) 187
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.