Rh6BG005000

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016556
Physical Location & Seq
Reverse (-)
728229 .. 732769
4541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG005000.1

Sequence Viewer

Length: 531 bp
ATGGCCGAGCTATCTCCTGAAGTACTAGTCCATGTTCTCGTCGTCGACGACTGCTTGGTTGACCGCAAAATCGTCGACAAGCTCCTCAAAGCATCCGCCTTTAAGGTTACTACTGTAGAAAGTGGAAAAAAAGCACTAGAGGTTCTTGGAATGGAAGAAGAGAAGCTTGACAAGCCAAGTGTTAAAGATCATGATGTTAACATAATCCTCACTGACTACTGTATGCCTGAGATGAATGGCCATGATCTTCTAGTTGCTGTAAAGGAGGACAGCCGCATGAAATCAATTCCAGTGGTTATAATGTCTTCTGAATTTAATCCACAGAGAATCAGCAGGTGTCTCACAGATGGTGCTCAAGAATTCTTGCAGAAACCTCTGAAAGTGAAAGACTTGGAGAAGTTACGAAGCTATGTAAAGCCAGCAGTTCCAGTACCCAAAGTGGGAACAAAACGAAAAGCTCTAGTTGATCTGATGCCAGAAAGTAATGAAGCAGAAAGGCGGCCTTGCCCTGCTGGAGTTGCTGTTGCATAA

Protein Analysis

176

Amino Acids

19.52

Weight (kDa)

6.33

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 12 - 133 1.2e-18 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00450 FvH4_2g00450
rosa_chinensis RchiOBHm_Chr6g0250401
rosa_laevigata RLG00000015542
rosa_multiflora Rmu_sc0000411.1_g000003 Rmu_sc0001209.1_g000037
rosa_roxburghii Rroxscaffold_7G00217260
rosa_rugosa Rorug05G0496100 Rorug05G0496200 Rorug05G0496300
rosa_samantha Rh6AG005700 Rh6BG005000
rosa_wichuraiana Rw6G000630 Rw6G000700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AarI CACCTGC 1 cut(s) 324
Acc36I ACCTGC 1 cut(s) 324
AccI GTMKAC 2 cut(s) 45, 75
AciI CCGC 4 cut(s) 64, 96, 274, 499
AcoI YGGCCR 2 cut(s) 3, 238
AcsI RAATTY 2 cut(s) 311, 359
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 2 cut(s) 24, 432
AfiI CCNNNNNNNGG 1 cut(s) 440
AhlI ACTAGT 1 cut(s) 25
AluBI AGCT 5 cut(s) 10, 82, 166, 408, 458
AluI AGCT 5 cut(s) 10, 82, 166, 408, 458
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 344
AoxI GGCC 3 cut(s) 3, 238, 500
ApoI RAATTY 2 cut(s) 311, 359
BalI TGGCCA 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 355
BccI CCATC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BcoDI GTCTC 1 cut(s) 344
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 4 cut(s) 26, 137, 251, 461
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 2 cut(s) 274, 500
BlsI GCNGC 2 cut(s) 275, 501
BmcAI AGTACT 1 cut(s) 24
BmsI GCATC 2 cut(s) 101, 462
BpiI GAAGAC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 339
BsaXI ACNNNNNCTCC 1 cut(s) 507
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 290, 428
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 290, 428
BseRI GAGGAG 1 cut(s) 74
BshFI GGCC 3 cut(s) 5, 240, 502
BsiHKAI GWGCWC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 344
BsnI GGCC 3 cut(s) 5, 240, 502
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 3 cut(s) 187, 244, 466
BspACI CCGC 4 cut(s) 64, 96, 274, 499
BspANI GGCC 3 cut(s) 5, 240, 502
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 324
BsrI ACTGG 2 cut(s) 290, 428
BssMI GATC 3 cut(s) 187, 244, 466
Bst4CI ACNGT 2 cut(s) 115, 221
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 3 cut(s) 190, 247, 469
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 187, 244, 466
BstMWI GCNNNNNNNGC 2 cut(s) 172, 518
BstSFI CTRYAG 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 5, 240, 502
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 210, 297
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 420
CciI TCATGA 1 cut(s) 190
Csp6I GTAC 2 cut(s) 23, 431
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviAII CATG 4 cut(s) 32, 191, 242, 277
CviQI GTAC 2 cut(s) 23, 431
DdeI CTNAG 1 cut(s) 228
DpnI GATC 3 cut(s) 189, 246, 468
DpnII GATC 3 cut(s) 187, 244, 466
EaeI YGGCCR 2 cut(s) 3, 238
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 359
FaeI CATG 4 cut(s) 35, 194, 245, 280
FaiI YATR 9 cut(s) 33, 192, 203, 224, 243, 278, 299, 411, 529
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 487, 519
FatI CATG 4 cut(s) 31, 190, 241, 276
FblI GTMKAC 2 cut(s) 45, 75
Fnu4HI GCNGC 2 cut(s) 274, 500
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 274, 500
FspBI CTAG 4 cut(s) 26, 137, 251, 461
GluI GCNGC 2 cut(s) 274, 500
HaeIII GGCC 3 cut(s) 5, 240, 502
Hin1II CATG 4 cut(s) 35, 194, 245, 280
HincII GTYRAC 4 cut(s) 46, 61, 76, 199
HindII GTYRAC 4 cut(s) 46, 61, 76, 199
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 1 cut(s) 327
HpaI GTTAAC 1 cut(s) 199
Hpy166II GTNNAC 4 cut(s) 46, 61, 76, 199
Hpy188I TCNGA 3 cut(s) 310, 378, 471
Hpy188III TCNNGA 3 cut(s) 17, 191, 356
Hpy8I GTNNAC 4 cut(s) 46, 61, 76, 199
Hpy99I CGWCG 4 cut(s) 44, 47, 50, 77
HpyCH4III ACNGT 2 cut(s) 115, 221
HpyCH4V TGCA 2 cut(s) 367, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 518
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 4 cut(s) 35, 194, 245, 280
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 187, 244, 466
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 9 cut(s) 30, 240, 303, 319, 432, 441, 489, 498, 522
LweI GCATC 2 cut(s) 101, 462
MaeI CTAG 4 cut(s) 26, 137, 251, 461
MaeIII GTNAC 2 cut(s) 106, 399
MalI GATC 3 cut(s) 189, 246, 468
MboI GATC 3 cut(s) 187, 244, 466
MboII GAAGA 4 cut(s) 167, 170, 239, 297
MhlI GDGCHC 1 cut(s) 355
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 3 cut(s) 285, 311, 359
MluNI TGGCCA 1 cut(s) 240
MnlI CCTC 5 cut(s) 95, 133, 218, 259, 384
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MseI TTAA 4 cut(s) 102, 183, 198, 315
Msp20I TGGCCA 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 172, 518
NdeII GATC 3 cut(s) 187, 244, 466
NlaIII CATG 4 cut(s) 35, 194, 245, 280
NmeAIII GCCGAG 1 cut(s) 31
PagI TCATGA 1 cut(s) 190
PaqCI CACCTGC 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 2 cut(s) 275, 501
PsiI TTATAA 1 cut(s) 299
RsaI GTAC 2 cut(s) 24, 432
RsaNI GTAC 2 cut(s) 23, 431
SalI GTCGAC 2 cut(s) 44, 74
SaqAI TTAA 4 cut(s) 102, 183, 198, 315
SatI GCNGC 2 cut(s) 274, 500
Sau3AI GATC 3 cut(s) 187, 244, 466
ScaI AGTACT 1 cut(s) 24
SduI GDGCHC 1 cut(s) 355
SetI ASST 9 cut(s) 12, 84, 108, 144, 168, 338, 376, 410, 460
SfaNI GCATC 2 cut(s) 101, 462
SfcI CTRYAG 1 cut(s) 114
SgrDI CGTCGACG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 3 cut(s) 285, 311, 359
SsiI CCGC 4 cut(s) 64, 96, 274, 499
SspMI CTAG 4 cut(s) 26, 137, 251, 461
TaaI ACNGT 2 cut(s) 115, 221
TaqI TCGA 2 cut(s) 45, 75
TasI AATT 3 cut(s) 285, 311, 359
TatI WGTACW 1 cut(s) 22
TauI GCSGC 2 cut(s) 276, 502
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 4 cut(s) 102, 183, 198, 315
Tru9I TTAA 4 cut(s) 102, 183, 198, 315
TscAI CASTG 2 cut(s) 217, 297
TspDTI ATGAA 3 cut(s) 248, 293, 501
TspRI CASTG 2 cut(s) 217, 297
XapI RAATTY 2 cut(s) 311, 359
XmiI GTMKAC 2 cut(s) 45, 75
XspI CTAG 4 cut(s) 26, 137, 251, 461
ZrmI AGTACT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.