Rh6AG005700

cheY-homologous receiver domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016556
Physical Location & Seq
Forward (+)
749572 .. 754555
4984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG005700.1

Sequence Viewer

Length: 381 bp
ATGGAAGAAGAGAAGCTTGACAAGCCAAGTGTTAAAGATCATGATGTTAACATAATCCTCACTGACTACTGTATGCCTGAGATGAATGGCCATGATCTTCTAGTTGCTGTAAAGGAGGACAGCTGCATGAAATCAATTCCGGTGGTCATAATGTCTTCTGAATTTAATCCTCAGAGAATCAGCAGGTGTCTCACAGATGGTGCTCAAGAATTCTTGCAGAAACCTCTGAAAGTGAAAGACTTGGAGAAGTTACGAAGCTATGTAAAGCCAGCAGTTCCAGTACCCAAAGTAGGAACAAAACGAAAAGCTCTAGTTGATCTGATGCCAGAAAGTAATGAAGCAGAAAGGCGGCCTTGCCCTGCTGGAGTTGCTGTTGCATAA

Protein Analysis

126

Amino Acids

14.08

Weight (kDa)

6.13

Isoelectric Point (pI)

71.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 11 - 83 2.8e-13 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00450 FvH4_2g00450
rosa_chinensis RchiOBHm_Chr6g0250401
rosa_laevigata RLG00000015542
rosa_multiflora Rmu_sc0000411.1_g000003 Rmu_sc0001209.1_g000037
rosa_roxburghii Rroxscaffold_7G00217260
rosa_rugosa Rorug05G0496100 Rorug05G0496200 Rorug05G0496300
rosa_samantha Rh6AG005700 Rh6BG005000
rosa_wichuraiana Rw6G000630 Rw6G000700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 174
AciI CCGC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 2 cut(s) 161, 209
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 290
AluBI AGCT 4 cut(s) 16, 123, 258, 308
AluI AGCT 4 cut(s) 16, 123, 258, 308
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 194
AoxI GGCC 2 cut(s) 88, 350
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 2 cut(s) 161, 209
BalI TGGCCA 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 2 cut(s) 101, 311
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 124, 350
BlsI GCNGC 2 cut(s) 125, 351
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 139
BsaXI ACNNNNNCTCC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 69, 185
BseNI ACTGG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 110
BshFI GGCC 2 cut(s) 90, 352
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 2 cut(s) 90, 352
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 37, 94, 316
BspACI CCGC 1 cut(s) 349
BspANI GGCC 2 cut(s) 90, 352
BspCNI CTCAG 2 cut(s) 70, 184
BspHI TCATGA 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 278
BssMI GATC 3 cut(s) 37, 94, 316
Bst4CI ACNGT 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 78, 171
BstKTI GATC 3 cut(s) 40, 97, 319
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 37, 94, 316
BstMWI GCNNNNNNNGC 2 cut(s) 22, 368
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 147
BsuRI GGCC 2 cut(s) 90, 352
BtsIMutI CAGTG 1 cut(s) 60
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 40
Csp6I GTAC 1 cut(s) 281
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 3 cut(s) 41, 92, 127
CviJI RGCY 8 cut(s) 16, 25, 90, 123, 258, 268, 308, 352
CviKI_1 RGCY 8 cut(s) 16, 25, 90, 123, 258, 268, 308, 352
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 2 cut(s) 78, 171
DpnI GATC 3 cut(s) 39, 96, 318
DpnII GATC 3 cut(s) 37, 94, 316
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
EcoRI GAATTC 1 cut(s) 209
FaeI CATG 3 cut(s) 44, 95, 130
FaiI YATR 8 cut(s) 42, 53, 74, 93, 128, 149, 261, 379
FalI AAGNNNNNCTT 3 cut(s) 32, 337, 369
FatI CATG 3 cut(s) 40, 91, 126
Fnu4HI GCNGC 2 cut(s) 124, 350
Fsp4HI GCNGC 2 cut(s) 124, 350
FspBI CTAG 2 cut(s) 101, 311
GluI GCNGC 2 cut(s) 124, 350
HaeIII GGCC 2 cut(s) 90, 352
HapII CCGG 1 cut(s) 140
Hin1II CATG 3 cut(s) 44, 95, 130
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 1 cut(s) 177
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 160, 174, 228, 321
Hpy188III TCNNGA 2 cut(s) 41, 206
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 126, 217, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 368
HpyF3I CTNAG 2 cut(s) 78, 171
Hsp92II CATG 3 cut(s) 44, 95, 130
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 3 cut(s) 37, 94, 316
LpnPI CCDG 8 cut(s) 90, 153, 169, 282, 291, 339, 348, 372
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 312
MaeI CTAG 2 cut(s) 101, 311
MaeIII GTNAC 1 cut(s) 249
MalI GATC 3 cut(s) 39, 96, 318
MboI GATC 3 cut(s) 37, 94, 316
MboII GAAGA 4 cut(s) 17, 20, 89, 147
MhlI GDGCHC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 3 cut(s) 135, 161, 209
MluNI TGGCCA 1 cut(s) 90
MnlI CCTC 4 cut(s) 68, 109, 180, 234
Mox20I TGGCCA 1 cut(s) 90
MscI TGGCCA 1 cut(s) 90
MseI TTAA 3 cut(s) 33, 48, 165
Msp20I TGGCCA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 22, 368
NdeII GATC 3 cut(s) 37, 94, 316
NlaIII CATG 3 cut(s) 44, 95, 130
PagI TCATGA 1 cut(s) 40
PaqCI CACCTGC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 125, 351
PvuII CAGCTG 1 cut(s) 123
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SaqAI TTAA 3 cut(s) 33, 48, 165
SatI GCNGC 2 cut(s) 124, 350
Sau3AI GATC 3 cut(s) 37, 94, 316
SduI GDGCHC 1 cut(s) 205
SetI ASST 6 cut(s) 18, 125, 188, 226, 260, 310
SfaNI GCATC 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 3 cut(s) 135, 161, 209
SsiI CCGC 1 cut(s) 349
SspMI CTAG 2 cut(s) 101, 311
TaaI ACNGT 1 cut(s) 71
TasI AATT 3 cut(s) 135, 161, 209
TauI GCSGC 1 cut(s) 352
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 3 cut(s) 33, 48, 165
Tru9I TTAA 3 cut(s) 33, 48, 165
TscAI CASTG 1 cut(s) 67
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 3 cut(s) 98, 143, 351
TspRI CASTG 1 cut(s) 67
XapI RAATTY 2 cut(s) 161, 209
XspI CTAG 2 cut(s) 101, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.