Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016556

Physical Location & Seq

Genomic Coordinates Forward (+)

67813336 .. 67816999

Gene Structure 3664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0496300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCCTGCCAACGATAACATGATGACCGATGAGTATGAACAGCAGCAAATCGAGAAGTGCCCCGTCAAAATAGATATTGGGCCTGTGTACAATGTTGATCCTGCAAAGAGGCATTCCTATGCTCAAAATGGTTGCTACCCTGAGGAGAGGGAACTGATTTTTGATATAGATATGTCAGATTACAATGATGTTAGATACTGCTGCTCAGGAGCTGATGTGTGCCTGGAGTGCTGGCCGCTTATGACGATTGCTATCAAAGTATATAGTGGCCGACGTGGTGTTCATTGTTGGGTTTGTGATGGGAAAGCTAGAAGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTACAAGGTGGGCAACGAAAACAGTCATAAAAAGGTTTCTTTGATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATCATATACTGAAGTTCTTAAGGATTTCTTTGAGAGGACATCGCTTTCCAGTCAAAAGATATTTTCTACTGCAGAGAGATATGAAAAGATCTTAGATATGATTCCTGATGAATCTGTCACTTCTGAGCTCCAGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATATTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGAAAACAGAACATGCAAGGACTGCCTAGATGCATTGTGGAGATTGTGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTATATCCAAAGACGGGTCGTGTTTGTGTTCCGATTGATATCACCCGTTGCAAGGAGTTTGATCCTACTGCAGTTCCAACCCTTTCCACTCTTATAGAAGAACTTAATAATGAGGGTTTGAGGGCAGAGGATAATAACGAACGGGATAGAACGTCACTTGGAAAATCAATAAGATTCTTCAAATCATCAATTTTGGACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0022622 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048830 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

323

Amino Acids

37.2

Weight (kDa)

6.04

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	87 - 270	3.6e-28	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00450 FvH4_2g00450
rosa_chinensis	RchiOBHm_Chr6g0250401
rosa_laevigata	RLG00000015542
rosa_multiflora	Rmu_sc0000411.1_g000003 Rmu_sc0001209.1_g000037
rosa_roxburghii	Rroxscaffold_7G00217260
rosa_rugosa	Rorug05G0496100 Rorug05G0496200 Rorug05G0496300
rosa_samantha	Rh6AG005700 Rh6BG005000
rosa_wichuraiana	Rw6G000630 Rw6G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	757
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	2 cut(s)	92, 824
AcoI	YGGCCR	2 cut(s)	233, 268
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	782, 820
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	732, 949
AjiI	CACGTC	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	222, 552
AloI	GAACNNNNNNTCC	2 cut(s)	677, 709
AluBI	AGCT	5 cut(s)	212, 308, 338, 550, 625
AluI	AGCT	5 cut(s)	212, 308, 338, 550, 625
Alw21I	GWGCWC	1 cut(s)	552
AlwI	GGATC	2 cut(s)	92, 824
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	4 cut(s)	80, 233, 268, 394
ApaI	GGGCCC	1 cut(s)	398
ApeKI	GCWGC	5 cut(s)	43, 201, 335, 622, 637
AseI	ATTAAT	1 cut(s)	603
AspS9I	GGNCC	4 cut(s)	80, 394, 395, 964
AsuHPI	GGTGA	1 cut(s)	802
AvaII	GGWCC	1 cut(s)	964
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	2 cut(s)	62, 398
BanI	GGYRCC	1 cut(s)	757
BanII	GRGCYC	2 cut(s)	398, 552
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	5 cut(s)	55, 188, 347, 624, 634
BccI	CCATC	2 cut(s)	293, 385
BciT130I	CCWGG	2 cut(s)	224, 554
BfaI	CTAG	3 cut(s)	309, 672, 711
BfmI	CTRYAG	2 cut(s)	492, 837
BfrI	CTTAAG	1 cut(s)	440
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	6 cut(s)	44, 202, 236, 336, 623, 638
BlsI	GCNGC	6 cut(s)	45, 203, 237, 337, 624, 639
Bme1390I	CCNGG	2 cut(s)	224, 554
Bme18I	GGWCC	1 cut(s)	964
BmgBI	CACGTC	1 cut(s)	275
BmgT120I	GGNCC	4 cut(s)	80, 394, 395, 964
BmiI	GGNNCC	3 cut(s)	396, 759, 966
BmrFI	CCNGG	2 cut(s)	224, 554
BmsI	GCATC	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	2 cut(s)	245, 536
Bpu10I	CCTNAGC	1 cut(s)	205
BsaBI	GATNNNNATC	2 cut(s)	251, 806
BsaJI	CCNNGG	1 cut(s)	553
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 677, 707
Bsc4I	CCNNNNNNNGG	2 cut(s)	782, 820
Bse1I	ACTGG	1 cut(s)	471
Bse21I	CCTNAGG	1 cut(s)	141
Bse8I	GATNNNNATC	2 cut(s)	251, 806
BseBI	CCWGG	2 cut(s)	224, 554
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	1 cut(s)	406
BseJI	GATNNNNATC	2 cut(s)	251, 806
BseLI	CCNNNNNNNGG	2 cut(s)	782, 820
BseMII	CTCAG	4 cut(s)	132, 219, 320, 537
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	2 cut(s)	62, 398
BseXI	GCAGC	5 cut(s)	55, 188, 347, 624, 634
BshFI	GGCC	4 cut(s)	82, 235, 270, 396
BshNI	GGYRCC	1 cut(s)	757
BsiHKAI	GWGCWC	1 cut(s)	552
BslI	CCNNNNNNNGG	2 cut(s)	782, 820
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	82, 235, 270, 396
Bsp120I	GGGCCC	1 cut(s)	394
Bsp1286I	GDGCHC	3 cut(s)	62, 398, 552
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	97, 422, 510, 829
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	4 cut(s)	82, 235, 270, 396
BspCNI	CTCAG	4 cut(s)	133, 218, 321, 538
BspLI	GGNNCC	3 cut(s)	396, 759, 966
BspMAI	CTGCAG	2 cut(s)	496, 841
BspPI	GGATC	2 cut(s)	92, 824
BspQI	GCTCTTC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	757
BspTI	CTTAAG	1 cut(s)	440
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	4 cut(s)	97, 422, 510, 829
Bst2UI	CCWGG	2 cut(s)	224, 554
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	408
BstAFI	CTTAAG	1 cut(s)	440
BstAPI	GCANNNNNTGC	2 cut(s)	341, 667
BstAUI	TGTACA	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	6, 233
BstDEI	CTNAG	6 cut(s)	141, 205, 329, 514, 546, 969
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	4 cut(s)	100, 425, 513, 832
BstMBI	GATC	4 cut(s)	97, 422, 510, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 341, 667
BstNI	CCWGG	2 cut(s)	224, 554
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	2 cut(s)	222, 552
BstSFI	CTRYAG	2 cut(s)	492, 837
BstSLI	GKGCMC	2 cut(s)	62, 398
BstV1I	GCAGC	5 cut(s)	55, 188, 347, 624, 634
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	4 cut(s)	82, 235, 270, 396
BtgZI	GCGATG	1 cut(s)	447
BtrI	CACGTC	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	6, 233
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr13I	GGNCC	4 cut(s)	80, 394, 395, 964
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	19, 658, 721
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	6 cut(s)	141, 205, 329, 514, 546, 969
DpnI	GATC	4 cut(s)	99, 424, 512, 831
DpnII	GATC	4 cut(s)	97, 422, 510, 829
EaeI	YGGCCR	2 cut(s)	233, 268
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	2 cut(s)	398, 552
Eco32I	GATATC	1 cut(s)	808
Eco47I	GGWCC	1 cut(s)	964
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	453
Eco81I	CCTNAGG	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	222, 552
EcoRV	GATATC	1 cut(s)	808
EcoT22I	ATGCAT	1 cut(s)	680
EcoT38I	GRGCYC	2 cut(s)	398, 552
FaeI	CATG	3 cut(s)	22, 661, 724
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	3 cut(s)	18, 657, 720
FauNDI	CATATG	1 cut(s)	738
Fnu4HI	GCNGC	6 cut(s)	44, 202, 236, 336, 623, 638
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	2 cut(s)	398, 552
Fsp4HI	GCNGC	6 cut(s)	44, 202, 236, 336, 623, 638
FspBI	CTAG	3 cut(s)	309, 672, 711
GluI	GCNGC	6 cut(s)	44, 202, 236, 336, 623, 638
GsuI	CTGGAG	2 cut(s)	245, 536
HaeIII	GGCC	4 cut(s)	82, 235, 270, 396
Hin1II	CATG	3 cut(s)	22, 661, 724
HinfI	GANTC	3 cut(s)	523, 533, 942
HphI	GGTGA	1 cut(s)	802
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	178, 547, 801
Hpy188III	TCNNGA	4 cut(s)	52, 207, 527, 645
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	274, 920
HpyCH4V	TGCA	8 cut(s)	104, 494, 590, 640, 661, 678, 819, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 341, 667
HpyF3I	CTNAG	6 cut(s)	141, 205, 329, 514, 546, 969
HpySE526I	ACGT	2 cut(s)	274, 920
Hsp92II	CATG	3 cut(s)	22, 661, 724
Kzo9I	GATC	4 cut(s)	97, 422, 510, 829
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	209, 555, 619
Lsp1109I	GCAGC	5 cut(s)	55, 188, 347, 624, 634
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	3 cut(s)	309, 672, 711
MaeII	ACGT	2 cut(s)	274, 920
MaeIII	GTNAC	2 cut(s)	538, 921
MalI	GATC	4 cut(s)	99, 424, 512, 831
MboI	GATC	4 cut(s)	97, 422, 510, 829
MboII	GAAGA	4 cut(s)	395, 608, 878, 937
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	3 cut(s)	62, 398, 552
MluCI	AATT	1 cut(s)	957
MmeI	TCCRAC	1 cut(s)	869
MnlI	CCTC	9 cut(s)	102, 136, 141, 450, 592, 718, 874, 882, 889
Mph1103I	ATGCAT	1 cut(s)	680
MseI	TTAA	4 cut(s)	441, 603, 752, 873
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	625
MspCI	CTTAAG	1 cut(s)	440
MspR9I	CCNGG	2 cut(s)	224, 554
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	224, 554
MwoI	GCNNNNNNNGC	3 cut(s)	228, 341, 667
NdeI	CATATG	1 cut(s)	738
NdeII	GATC	4 cut(s)	97, 422, 510, 829
NlaIII	CATG	3 cut(s)	22, 661, 724
NlaIV	GGNNCC	3 cut(s)	396, 759, 966
NmuCI	GTSAC	2 cut(s)	538, 921
NsiI	ATGCAT	1 cut(s)	680
NspI	RCATGY	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	408
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	523, 533, 942
PkrI	GCNGC	6 cut(s)	45, 203, 237, 337, 624, 639
PshBI	ATTAAT	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	222, 552
PspGI	CCWGG	2 cut(s)	222, 552
PspN4I	GGNNCC	3 cut(s)	396, 759, 966
PspOMI	GGGCCC	1 cut(s)	394
PspPI	GGNCC	4 cut(s)	80, 394, 395, 964
PstI	CTGCAG	2 cut(s)	496, 841
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	510
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	4 cut(s)	441, 603, 752, 873
SatI	GCNGC	6 cut(s)	44, 202, 236, 336, 623, 638
Sau3AI	GATC	4 cut(s)	97, 422, 510, 829
Sau96I	GGNCC	4 cut(s)	80, 394, 395, 964
ScrFI	CCNGG	2 cut(s)	224, 554
SduI	GDGCHC	3 cut(s)	62, 398, 552
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	2 cut(s)	492, 837
SinI	GGWCC	1 cut(s)	964
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	1 cut(s)	957
SsiI	CCGC	1 cut(s)	236
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	3 cut(s)	309, 672, 711
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	222, 552
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	277, 923
TaqI	TCGA	1 cut(s)	51
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	1 cut(s)	957
TatI	WGTACW	1 cut(s)	87
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	3 cut(s)	523, 533, 942
Tru1I	TTAA	4 cut(s)	441, 603, 752, 873
Tru9I	TTAA	4 cut(s)	441, 603, 752, 873
TseFI	GTSAC	2 cut(s)	538, 921
TseI	GCWGC	5 cut(s)	43, 201, 335, 622, 637
Tsp45I	GTSAC	2 cut(s)	538, 921
TspDTI	ATGAA	7 cut(s)	51, 272, 339, 395, 519, 546, 755
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	964
VspI	ATTAAT	1 cut(s)	603
XceI	RCATGY	1 cut(s)	661
XspI	CTAG	3 cut(s)	309, 672, 711
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.