Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000427.1

Orthogroup ID

OG0016467

Physical Location & Seq

Genomic Coordinates Reverse (-)

140414 .. 141751

Gene Structure 1338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000427.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgctcggtataaggactcgaatggaggaactccttggagtgcctatttctgaggtagtacagcaagagaagaaggagttgttggagcgccttcaaactttgttgcatcaagaggagatgttttggagacaacgatctaaagttacctggcttaaggaaggggaccgaaatacgggtttctttcataggaaagctgataatagaagacgcaaaaataggttgcaaggactatatgatgcacatgggcagtggaaggaggaggatgcggatgtggaggaaattgtcacgtcctattttgaaaacatgttccaggcttctgacgtggattttgaggctgtgaataagacattggacgctatacaaccttgcgttagtcaggagatgaatgctcggttatgtgcagattatacgttcgaagagaagcactacccttacaattttcttcatcttgaagttgaaggagattctaagctcctcattgacagcataaatggtcagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase RVT_1 zf-RVT

Protein Analysis

167

Amino Acids

19.82

Weight (kDa)

5.1

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016467)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000166.1_g000004 Rmu_sc0000367.1_g000154 Rmu_sc0000427.1_g000031 Rmu_sc0000600.1_g000044 Rmu_sc0001176.1_g000010 Rmu_sc0004413.1_g000031 Rmu_sc0006266.1_g000030 Rmu_sc0007328.1_g000006 Rmu_sc0010364.1_g000007 Rmu_sc0010407.1_g000011 Rmu_sc0027596.1_g000003 Rmu_sc0036279.1_g000003
rosa_rugosa	Rorug01G0167200 Rorug05G0370800 Rorug06G0142200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflII	CTTAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	4 cut(s)	95, 299, 452, 458
AjiI	CACGTC	2 cut(s)	288, 322
AjnI	CCWGG	2 cut(s)	146, 309
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 332, 364
AluBI	AGCT	2 cut(s)	194, 472
AluI	AGCT	2 cut(s)	194, 472
Alw26I	GTCTC	1 cut(s)	121
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	414
AvaII	GGWCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	148, 311
BcoDI	GTCTC	1 cut(s)	121
BfoI	RGCGCY	1 cut(s)	91
BfrI	CTTAAG	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	148, 311
Bme18I	GGWCC	1 cut(s)	163
BmgBI	CACGTC	2 cut(s)	288, 322
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	2 cut(s)	148, 311
BmsI	GCATC	3 cut(s)	115, 226, 253
BpiI	GAAGAC	1 cut(s)	211
Bpu14I	TTCGAA	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	148, 311
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	268, 274
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	3 cut(s)	128, 272, 464
BsgI	GTGCAG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	2 cut(s)	148, 311
Bst6I	CTCTTC	1 cut(s)	411
BstAFI	CTTAAG	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	51, 468
BstF5I	GGATG	2 cut(s)	268, 274
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	148, 311
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	146, 309
BstV2I	GAAGAC	1 cut(s)	211
BtrI	CACGTC	2 cut(s)	288, 322
BtsCI	GGATG	2 cut(s)	268, 274
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	254
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	2 cut(s)	216, 362
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	2 cut(s)	242, 304
CviJI	RGCY	5 cut(s)	151, 194, 314, 335, 472
CviKI_1	RGCY	5 cut(s)	151, 194, 314, 335, 472
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	51, 468
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	146, 309
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	2 cut(s)	245, 307
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	241, 303
FokI	GGATG	2 cut(s)	275, 281
GlaI	GCGC	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	91
HgaI	GACGC	2 cut(s)	216, 362
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	245, 307
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	16, 464
Hpy188I	TCNGA	2 cut(s)	52, 319
Hpy188III	TCNNGA	3 cut(s)	110, 377, 449
HpyAV	CCTTC	5 cut(s)	67, 101, 152, 247, 452
HpyCH4IV	ACGT	3 cut(s)	287, 321, 410
HpyCH4V	TGCA	4 cut(s)	106, 223, 239, 401
HpyF3I	CTNAG	2 cut(s)	51, 468
HpySE526I	ACGT	3 cut(s)	287, 321, 410
Hsp92II	CATG	2 cut(s)	245, 307
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	85, 477
LpnPI	CCDG	5 cut(s)	133, 160, 296, 323, 362
LweI	GCATC	3 cut(s)	115, 226, 253
MaeII	ACGT	3 cut(s)	287, 321, 410
MaeIII	GTNAC	2 cut(s)	142, 283
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	4 cut(s)	82, 216, 428, 434
MluCI	AATT	2 cut(s)	279, 436
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	8 cut(s)	19, 46, 106, 250, 253, 268, 325, 485
MseI	TTAA	2 cut(s)	153, 502
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	148, 311
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	2 cut(s)	148, 311
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	245, 307
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	307
NspV	TTCGAA	1 cut(s)	414
PciI	ACATGT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	464
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PscI	ACATGT	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	146, 309
PspGI	CCWGG	2 cut(s)	146, 309
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	153, 502
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	148, 311
SetI	ASST	9 cut(s)	57, 149, 196, 221, 290, 324, 367, 413, 474
SfaNI	GCATC	3 cut(s)	115, 226, 253
SfuI	TTCGAA	1 cut(s)	414
SinI	GGWCC	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	279, 436
SsiI	CCGC	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	146, 309
StyI	CCWWGG	1 cut(s)	34
TaiI	ACGT	3 cut(s)	290, 324, 413
TaqI	TCGA	2 cut(s)	19, 414
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	2 cut(s)	279, 436
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	2 cut(s)	153, 502
Tru9I	TTAA	2 cut(s)	153, 502
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	173, 398, 434
TspRI	CASTG	1 cut(s)	254
Vha464I	CTTAAG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.