Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010407.1

Orthogroup ID

OG0016467

Physical Location & Seq

Genomic Coordinates Forward (+)

28277 .. 29711

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010407.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgttaagggttagagtaagactggaggagttcttggatgtcacgcagtttgaggtagttcaagttgaaaagaaacagttgatggagtggctgcagatgctgttatcacaggaggaatccttttggcaacaatgttctaaggtaacttggttgaaagagggtgacaggaataccggtcattttcatcgcaaggctacaaacaagaagagaaagaatatgttaaaggggttatatgatgaagcaggaaactggtgtgaagatgatgaaggcttagaaagggtggcgtcttcatactttaccaagatgtttactgcttcagagattgactatgaggctatggaagctacgttggaggccattcaaccttgtgtttctcaagcaatgaattgctctgtgcttcatattttccagatgagaagcaagcttctggtcttcttcctggtattgaagtttgcaatgaggctccttcagttaagcatttattgtttgcggatgacaatatgctttatgctcacgcttctttggaggattgctatgagatacaagatgttattgagacatatgggagagcttcgggttagtacgttggtcaattttgataaaaattctgtggtgtttagcaagaatgtactggtctcaatgcaaaaggaagtttctagtcttttggggctggaggttgtggcttcacgtgagaaatatctaggactgcctacttatgttgggaggaagaaaatggctacttttcaatacatcaaggagaatttggctacgaagtttgctaactgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

262

Amino Acids

30.78

Weight (kDa)

9.18

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016467)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000166.1_g000004 Rmu_sc0000367.1_g000154 Rmu_sc0000427.1_g000031 Rmu_sc0000600.1_g000044 Rmu_sc0001176.1_g000010 Rmu_sc0004413.1_g000031 Rmu_sc0006266.1_g000030 Rmu_sc0007328.1_g000006 Rmu_sc0010364.1_g000007 Rmu_sc0010407.1_g000011 Rmu_sc0027596.1_g000003 Rmu_sc0036279.1_g000003
rosa_rugosa	Rorug01G0167200 Rorug05G0370800 Rorug06G0142200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	604, 760
AcuI	CTGAAG	2 cut(s)	300, 452
AcvI	CACGTG	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	583, 630
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	6 cut(s)	62, 68, 154, 362, 448, 746
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	3 cut(s)	344, 424, 571
AluI	AGCT	3 cut(s)	344, 424, 571
Alw26I	GTCTC	2 cut(s)	550, 640
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	604, 760
AsiGI	ACCGGT	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	689
BbsI	GAAGAC	2 cut(s)	279, 424
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	550, 640
BfaI	CTAG	2 cut(s)	657, 701
BfmI	CTRYAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	2 cut(s)	279, 424
BpmI	CTGGAG	2 cut(s)	44, 692
BpuEI	CTTGAG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	689
BsaHI	GRCGYC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	640
BsaWI	WCCGGW	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	3 cut(s)	27, 254, 636
Bse3DI	GCAATG	2 cut(s)	387, 462
BseBI	CCWGG	1 cut(s)	440
BseGI	GGATG	2 cut(s)	43, 498
BseMI	GCAATG	2 cut(s)	387, 462
BseNI	ACTGG	3 cut(s)	27, 254, 636
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	78
BshFI	GGCC	1 cut(s)	356
BshTI	ACCGGT	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	550, 640
BsnI	GGCC	1 cut(s)	356
Bso31I	GGTCTC	1 cut(s)	640
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	640
BsrDI	GCAATG	2 cut(s)	387, 462
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	3 cut(s)	27, 254, 636
BssAI	RCCGGY	1 cut(s)	173
BssNI	GRCGYC	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	689
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	2 cut(s)	138, 271
BstF5I	GGATG	2 cut(s)	43, 498
BstMAI	GTCTC	2 cut(s)	550, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 341
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	279, 424
BsuRI	GGCC	1 cut(s)	356
BtgZI	GCGATG	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	43, 498
Cac8I	GCNNGC	1 cut(s)	422
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	173
CseI	GACGC	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	582, 629
CspAI	ACCGGT	1 cut(s)	173
CviQI	GTAC	2 cut(s)	582, 629
DdeI	CTNAG	2 cut(s)	138, 271
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	640
Eco57I	CTGAAG	2 cut(s)	300, 452
Eco72I	CACGTG	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	438
FauNDI	CATATG	1 cut(s)	561
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	50, 505
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	2 cut(s)	657, 701
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	2 cut(s)	44, 692
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	2 cut(s)	260, 476
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	3 cut(s)	347, 584, 688
HpyCH4V	TGCA	3 cut(s)	94, 455, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 341
HpyF3I	CTNAG	2 cut(s)	138, 271
HpySE526I	ACGT	3 cut(s)	347, 584, 688
Hsp92I	GRCGYC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	657, 701
MaeII	ACGT	3 cut(s)	347, 584, 688
MaeIII	GTNAC	3 cut(s)	40, 142, 161
MboII	GAAGA	6 cut(s)	217, 269, 279, 424, 427, 739
MluCI	AATT	4 cut(s)	385, 592, 604, 760
MmeI	TCCRAC	1 cut(s)	330
MseI	TTAA	3 cut(s)	5, 221, 473
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	97, 341
NdeI	CATATG	1 cut(s)	561
NlaIV	GGNNCC	1 cut(s)	464
NmuCI	GTSAC	2 cut(s)	40, 161
PfeI	GAWTC	1 cut(s)	116
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	93
PmaCI	CACGTG	1 cut(s)	689
PmlI	CACGTG	1 cut(s)	689
Ppu21I	YACGTR	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	438
PspCI	CACGTG	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	100
RsaI	GTAC	2 cut(s)	583, 630
RsaNI	GTAC	2 cut(s)	582, 629
SaqAI	TTAA	3 cut(s)	5, 221, 473
SatI	GCNGC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	4 cut(s)	385, 592, 604, 760
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	2 cut(s)	657, 701
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	3 cut(s)	350, 587, 691
TasI	AATT	4 cut(s)	385, 592, 604, 760
TatI	WGTACW	1 cut(s)	628
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	5, 221, 473
Tru9I	TTAA	3 cut(s)	5, 221, 473
TseFI	GTSAC	2 cut(s)	40, 161
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	2 cut(s)	40, 161
TspDTI	ATGAA	6 cut(s)	173, 252, 279, 279, 389, 398
XapI	RAATTY	2 cut(s)	604, 760
XspI	CTAG	2 cut(s)	657, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.