Rmu_sc0010364.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010364.1
OG0016467
Physical Location & Seq
Forward (+)
35703 .. 36041
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010364.1_g000007.1.cds

Sequence Viewer

Length: 339 bp
atgcttggagttcgaacaagactggaggaattaatggattccacttctacgatggctattcaggaggaaaagaaaatgctgatggataaacttcaattacttttgtcccaagaagagtctttttggagacaaagagcaaaggtgctgtggttgaaagaaggcgatagaaatactagcttctttcatcgaaaggctgcaaacagaaagcgtaagaatgttatccatgggttatttgataatcagaatgtttggcgcgaggatgatgttggagtggaacaagtggtcacagagtttttcacttctctgtttattgcaactctgattacatggatgcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

112

Amino Acids

13.37

Weight (kDa)

8.08

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 255
AgsI TTSAA 2 cut(s) 95, 154
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 194
AseI ATTAAT 1 cut(s) 32
AspLEI GCGC 1 cut(s) 255
AsuII TTCGAA 1 cut(s) 13
BbvI GCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 46, 76
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmsI GCATC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 265, 336
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 13
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 13
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 265, 336
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 121
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 265, 336
CfoI GCGC 1 cut(s) 255
CviAII CATG 2 cut(s) 224, 327
CviJI RGCY 3 cut(s) 56, 177, 194
CviKI_1 RGCY 3 cut(s) 56, 177, 194
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 227, 330
FaiI YATR 2 cut(s) 225, 328
FaqI GGGAC 1 cut(s) 91
FatI CATG 2 cut(s) 223, 326
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 174
GlaI GCGC 1 cut(s) 254
GluI GCNGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 44
HhaI GCGC 1 cut(s) 255
Hin1II CATG 2 cut(s) 227, 330
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 2 cut(s) 38, 116
Hpy188I TCNGA 2 cut(s) 243, 321
Hpy188III TCNNGA 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 197, 314, 334
Hsp92II CATG 2 cut(s) 227, 330
HspAI GCGC 1 cut(s) 253
LpnPI CCDG 2 cut(s) 8, 47
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 283
MboII GAAGA 1 cut(s) 125
MluCI AATT 2 cut(s) 29, 95
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 3 cut(s) 19, 58, 250
MseI TTAA 1 cut(s) 32
MvnI CGCG 1 cut(s) 255
NcoI CCATGG 1 cut(s) 223
NlaIII CATG 2 cut(s) 227, 330
NmuCI GTSAC 1 cut(s) 283
NspV TTCGAA 1 cut(s) 13
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PshBI ATTAAT 1 cut(s) 32
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 195
SchI GAGTC 1 cut(s) 125
SetI ASST 2 cut(s) 144, 179
SfaNI GCATC 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 13
Sse9I AATT 2 cut(s) 29, 95
SspMI CTAG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 223
TaqI TCGA 2 cut(s) 13, 187
TasI AATT 2 cut(s) 29, 95
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 173
VspI ATTAAT 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.