Rmu_sc0000429.1_g000098

histone H3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000429.1
OG0008921
Physical Location & Seq
Forward (+)
468694 .. 469627
934 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
ctgaattcaatttctgagatttccaatttcctctctcccccaaatcgcaagagttcaagaaacgagaaaaagatggcccgtaccaagcagactgctcgtaagtccaccggaggcaaggctccaaggaagcaattggctaccaaggctgctcgtaagtcggccccgaccaccggaggtgtgaagaagccccacagataccgccccggaactgttgcccttcgtgaaatccgcaagtaccagaagagcacggagctactgatcaggaagctcccgttccagaggctggttcgtgagattgcgcaggacttcaagactgaccttcgtttccagagccatgcagttttggcactgcaggaggcggctgaggcctaccttgttgggttgtttgaggacacaaatctctgtgccattcatgccaagcgcgtcactattatgcccaaggatatccagctcgccaggagaatcaggggcgagagggcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

160

Amino Acids

18.13

Weight (kDa)

11.15

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 68 - 155 1.6e-38 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 300
AccB7I CCANNNNNTGG 1 cut(s) 283
AccII CGCG 1 cut(s) 423
AciI CCGC 3 cut(s) 199, 229, 359
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 2 cut(s) 82, 236
AfiI CCNNNNNNNGG 2 cut(s) 170, 283
AgsI TTSAA 3 cut(s) 9, 57, 310
AjnI CCWGG 1 cut(s) 455
AluBI AGCT 3 cut(s) 253, 268, 451
AluI AGCT 3 cut(s) 253, 268, 451
Alw21I GWGCWC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 3 cut(s) 75, 159, 366
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 2 cut(s) 301, 423
AspS9I GGNCC 2 cut(s) 76, 160
AsuC2I CCSGG 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 457
BclI TGATCA 1 cut(s) 258
BcnI CCSGG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 350
BisI GCNGC 2 cut(s) 147, 360
BlsI GCNGC 2 cut(s) 148, 361
Bme1390I CCNGG 2 cut(s) 204, 457
BmgT120I GGNCC 2 cut(s) 76, 160
BmiI GGNNCC 2 cut(s) 120, 162
BmrFI CCNGG 2 cut(s) 204, 457
Bpu10I CCTNAGC 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 122, 141, 202, 438
BsaWI WCCGGW 2 cut(s) 107, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 283
BseBI CCWGG 1 cut(s) 457
BseDI CCNNGG 4 cut(s) 122, 141, 202, 438
BseLI CCNNNNNNNGG 2 cut(s) 170, 283
BseMII CTCAG 2 cut(s) 6, 354
BseXI GCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 3 cut(s) 77, 161, 368
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 3 cut(s) 108, 171, 204
BslI CCNNNNNNNGG 2 cut(s) 170, 283
BsnI GGCC 3 cut(s) 77, 161, 368
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 258
BspACI CCGC 3 cut(s) 199, 229, 359
BspANI GGCC 3 cut(s) 77, 161, 368
BspCNI CTCAG 2 cut(s) 7, 355
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 120, 162
BspMAI CTGCAG 1 cut(s) 354
BspQI GCTCTTC 1 cut(s) 236
BssECI CCNNGG 4 cut(s) 122, 141, 202, 438
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 3 cut(s) 122, 141, 438
Bst2UI CCWGG 1 cut(s) 457
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 2 cut(s) 15, 363
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 2 cut(s) 301, 423
BstKTI GATC 1 cut(s) 261
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 4 cut(s) 143, 344, 365, 413
BstNI CCWGG 1 cut(s) 457
BstSCI CCNGG 2 cut(s) 202, 455
BstSFI CTRYAG 1 cut(s) 350
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 3 cut(s) 77, 161, 368
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 1 cut(s) 453
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 2 cut(s) 301, 423
Cfr13I GGNCC 2 cut(s) 76, 160
CseI GACGC 1 cut(s) 412
Csp6I GTAC 2 cut(s) 81, 235
CviAII CATG 2 cut(s) 335, 413
CviQI GTAC 2 cut(s) 81, 235
DdeI CTNAG 2 cut(s) 15, 363
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 3 cut(s) 122, 141, 438
Eco147I AGGCCT 1 cut(s) 368
Eco32I GATATC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 455
EcoRV GATATC 1 cut(s) 445
EcoT14I CCWWGG 3 cut(s) 122, 141, 438
ErhI CCWWGG 3 cut(s) 122, 141, 438
FaeI CATG 2 cut(s) 338, 416
FaiI YATR 3 cut(s) 336, 414, 434
FatI CATG 2 cut(s) 334, 412
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 147, 360
Fsp4HI GCNGC 2 cut(s) 147, 360
FspI TGCGCA 1 cut(s) 300
GlaI GCGC 2 cut(s) 300, 422
GluI GCNGC 2 cut(s) 147, 360
HaeIII GGCC 3 cut(s) 77, 161, 368
HapII CCGG 3 cut(s) 108, 171, 204
HgaI GACGC 1 cut(s) 412
HhaI GCGC 2 cut(s) 301, 423
Hin1II CATG 2 cut(s) 338, 416
Hin6I GCGC 2 cut(s) 299, 421
HinP1I GCGC 2 cut(s) 299, 421
HinfI GANTC 1 cut(s) 462
HpaII CCGG 3 cut(s) 108, 171, 204
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 7 cut(s) 57, 221, 262, 277, 290, 310, 328
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 2 cut(s) 227, 329
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 338, 352
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 344, 365, 413
HpyF3I CTNAG 2 cut(s) 15, 363
Hsp92II CATG 2 cut(s) 338, 416
HspAI GCGC 2 cut(s) 299, 421
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 1 cut(s) 258
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 3 cut(s) 124, 250, 273
Lsp1109I GCAGC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 424
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 2 cut(s) 193, 253
MfeI CAATTG 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 4 cut(s) 4, 9, 25, 131
MnlI CCTC 8 cut(s) 41, 104, 167, 273, 349, 358, 382, 468
MseI TTAA 1 cut(s) 481
MslI CAYNNNNRTG 1 cut(s) 431
MspI CCGG 3 cut(s) 108, 171, 204
MspR9I CCNGG 2 cut(s) 204, 457
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 457
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 4 cut(s) 143, 344, 365, 413
NciI CCSGG 1 cut(s) 204
NdeII GATC 1 cut(s) 258
NlaIII CATG 2 cut(s) 338, 416
NlaIV GGNNCC 2 cut(s) 120, 162
NmuCI GTSAC 1 cut(s) 424
NsbI TGCGCA 1 cut(s) 300
PceI AGGCCT 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 462
PflMI CCANNNNNTGG 1 cut(s) 283
PkrI GCNGC 2 cut(s) 148, 361
Psp6I CCWGG 1 cut(s) 455
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 2 cut(s) 120, 162
PspPI GGNCC 2 cut(s) 76, 160
PstI CTGCAG 1 cut(s) 354
PstNI CAGNNNCTG 1 cut(s) 283
RsaI GTAC 2 cut(s) 82, 236
RsaNI GTAC 2 cut(s) 81, 235
RseI CAYNNNNRTG 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 481
SatI GCNGC 2 cut(s) 147, 360
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 76, 160
ScrFI CCNGG 2 cut(s) 204, 457
SduI GDGCHC 1 cut(s) 248
SetI ASST 6 cut(s) 178, 255, 270, 321, 375, 453
SfcI CTRYAG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 431
Sse9I AATT 4 cut(s) 4, 9, 25, 131
SseBI AGGCCT 1 cut(s) 368
SsiI CCGC 3 cut(s) 199, 229, 359
StuI AGGCCT 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 202, 455
StyI CCWWGG 3 cut(s) 122, 141, 438
TaaI ACNGT 1 cut(s) 211
TasI AATT 4 cut(s) 4, 9, 25, 131
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 1 cut(s) 481
Tru9I TTAA 1 cut(s) 481
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 283
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.