Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000455.1

Orthogroup ID

OG0016960

Physical Location & Seq

Genomic Coordinates Reverse (-)

62126 .. 66880

Gene Structure 4755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000455.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgaacacaagtcttgttcggccacgctcgtcacacgacgacgaggctagagaccaacatgcagagaagggtagggctcgaaggtggactggacggagctatgtggggccagaggacgtgcagcctagcattgactcgtcggaggaaggcaaagaagatggtggctccagtgaatctctgaaaaacaatagtttcagtgggccaattccgccttccattggtaatctggccgatcttacttttatagacctatctgacaacaagcttcagggatccatcccagtctctaatgggactacacttggtcttgataagttacttaaggcgagacgctttgatagaagaacaatgttcgatctccatcaaataagtgaggcaaaagcattgcttgcttcactagatgagagctccgaagaattggcttttatcattgatgagaattcacttgcttacgccttagagggccttctatcagatgacactgcaattgctgttaagaagctttctgccaaatcaaagcaagggaatcatgaatttgtgaatgagattggcatgatttctgctctgcaacacccttaccttgtcaagctttatggatgttgtattgaaggaaatgacttgttgcttgtctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

211

Amino Acids

23.11

Weight (kDa)

4.98

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016960)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07420
rosa_chinensis	RchiOBHm_Chr3g0485381
rosa_multiflora	Rmu_sc0000455.1_g000014 Rmu_sc0003863.1_g000006
rosa_roxburghii	Rroxscaffold_1G00046570 Rroxscaffold_2G00094580 Rroxscaffold_7G00158850 Rroxscaffold_7G00198560
rosa_rugosa	Rorug02G0195600 Rorug06G0009900 Rorug07G0338500
rosa_samantha	Rh6BG316300 Rh6BG316600
rosa_wichuraiana	Rw5G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	267, 280
AcoI	YGGCCR	2 cut(s)	20, 228
AcsI	RAATTY	2 cut(s)	439, 533
AcuI	CTGAAG	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	218
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	608
AjiI	CACGTC	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	196, 228
AluBI	AGCT	5 cut(s)	99, 265, 408, 502, 589
AluI	AGCT	5 cut(s)	99, 265, 408, 502, 589
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	3 cut(s)	45, 289, 322
AlwI	GGATC	2 cut(s)	267, 280
AoxI	GGCC	5 cut(s)	20, 107, 200, 228, 463
ApeKI	GCWGC	1 cut(s)	121
ApoI	RAATTY	2 cut(s)	439, 533
AspS9I	GGNCC	3 cut(s)	107, 200, 463
BamHI	GGATCC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	79, 410
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	3 cut(s)	152, 284, 369
BcoDI	GTCTC	3 cut(s)	45, 289, 322
BfaI	CTAG	3 cut(s)	48, 126, 398
BfrI	CTTAAG	1 cut(s)	320
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	107, 200, 463
BmiI	GGNNCC	3 cut(s)	108, 166, 274
BmrI	ACTGGG	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	3 cut(s)	94, 168, 281
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	1 cut(s)	360
BseGI	GGATG	2 cut(s)	276, 602
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	383
BseNI	ACTGG	3 cut(s)	94, 168, 281
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	5 cut(s)	22, 109, 202, 230, 465
BsiHKAI	GWGCWC	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	3 cut(s)	45, 289, 322
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	5 cut(s)	22, 109, 202, 230, 465
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	79, 410
Bsp143I	GATC	3 cut(s)	232, 272, 355
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	5 cut(s)	22, 109, 202, 230, 465
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	3 cut(s)	108, 166, 274
BspPI	GGATC	2 cut(s)	267, 280
BspTI	CTTAAG	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	3 cut(s)	94, 168, 281
BssMI	GATC	3 cut(s)	232, 272, 355
BstAFI	CTTAAG	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	457
BstF5I	GGATG	2 cut(s)	276, 602
BstKTI	GATC	3 cut(s)	235, 275, 358
BstMAI	GTCTC	3 cut(s)	45, 289, 322
BstMBI	GATC	3 cut(s)	232, 272, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 389
BstNSI	RCATGY	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuRI	GGCC	5 cut(s)	22, 109, 202, 230, 465
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	276, 602
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	175, 202, 480
Cac8I	GCNNGC	1 cut(s)	390
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	107, 200, 463
CseI	GACGC	1 cut(s)	339
CviAII	CATG	3 cut(s)	59, 530, 553
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	3 cut(s)	234, 274, 357
DpnII	GATC	3 cut(s)	232, 272, 355
EaeI	YGGCCR	2 cut(s)	20, 228
EciI	GGCGGA	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	79, 410
Eco31I	GGTCTC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	439
EcoT38I	GRGCYC	2 cut(s)	79, 410
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	3 cut(s)	62, 533, 556
FaiI	YATR	6 cut(s)	60, 102, 245, 531, 554, 594
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	58, 529, 552
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	2 cut(s)	263, 609
FriOI	GRGCYC	2 cut(s)	79, 410
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	3 cut(s)	48, 126, 398
GluI	GCNGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	5 cut(s)	22, 109, 202, 230, 465
HgaI	GACGC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	62, 533, 556
HindIII	AAGCTT	3 cut(s)	263, 500, 587
HinfI	GANTC	3 cut(s)	134, 173, 526
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	5 cut(s)	142, 180, 256, 412, 475
Hpy188III	TCNNGA	2 cut(s)	308, 530
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	3 cut(s)	41, 44, 142
HpyAV	CCTTC	6 cut(s)	61, 75, 140, 222, 476, 602
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	62, 121, 485, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 389
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	62, 533, 556
Kzo9I	GATC	3 cut(s)	232, 272, 355
LmnI	GCTCC	3 cut(s)	96, 170, 413
LpnPI	CCDG	6 cut(s)	75, 123, 181, 212, 254, 294
Lsp1109I	GCAGC	1 cut(s)	133
MaeI	CTAG	3 cut(s)	48, 126, 398
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	30, 315
MalI	GATC	3 cut(s)	234, 274, 357
MboI	GATC	3 cut(s)	232, 272, 355
MboII	GAAGA	3 cut(s)	167, 354, 425
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	2 cut(s)	79, 410
MluCI	AATT	5 cut(s)	204, 416, 439, 486, 533
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	37, 106, 136, 367, 454
MseI	TTAA	2 cut(s)	321, 495
MspCI	CTTAAG	1 cut(s)	320
MunI	CAATTG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	208, 389
NdeII	GATC	3 cut(s)	232, 272, 355
NlaIII	CATG	3 cut(s)	62, 533, 556
NlaIV	GGNNCC	3 cut(s)	108, 166, 274
NmuCI	GTSAC	1 cut(s)	30
NspI	RCATGY	1 cut(s)	62
PagI	TCATGA	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	173, 526
PkrI	GCNGC	1 cut(s)	123
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp124BI	GAGCTC	1 cut(s)	410
PspN4I	GGNNCC	3 cut(s)	108, 166, 274
PspPI	GGNCC	3 cut(s)	107, 200, 463
PsuI	RGATCY	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	321, 495
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	3 cut(s)	232, 272, 355
Sau96I	GGNCC	3 cut(s)	107, 200, 463
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	2 cut(s)	79, 410
SetI	ASST	9 cut(s)	86, 101, 120, 252, 267, 410, 504, 582, 591
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	204, 416, 439, 486, 533
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	3 cut(s)	48, 126, 398
SstI	GAGCTC	1 cut(s)	410
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	79, 354
TasI	AATT	5 cut(s)	204, 416, 439, 486, 533
TfiI	GAWTC	2 cut(s)	173, 526
Tru1I	TTAA	2 cut(s)	321, 495
Tru9I	TTAA	2 cut(s)	321, 495
TscAI	CASTG	3 cut(s)	175, 202, 487
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	17, 546
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	3 cut(s)	175, 202, 487
Vha464I	CTTAAG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	439, 533
XceI	RCATGY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XspI	CTAG	3 cut(s)	48, 126, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.