Paired amphipathic helix protein Sin3-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom07g07420 |
| rosa_chinensis | RchiOBHm_Chr3g0485381 |
| rosa_multiflora | Rmu_sc0000455.1_g000014 Rmu_sc0003863.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00046570 Rroxscaffold_2G00094580 Rroxscaffold_7G00158850 Rroxscaffold_7G00198560 |
| rosa_rugosa | Rorug02G0195600 Rorug06G0009900 Rorug07G0338500 |
| rosa_samantha | Rh6BG316300 Rh6BG316600 |
| rosa_wichuraiana | Rw5G040660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 172 |
| AccIII | TCCGGA | 1 cut(s) | 313 |
| AciI | CCGC | 1 cut(s) | 227 |
| AfaI | GTAC | 1 cut(s) | 250 |
| AgsI | TTSAA | 2 cut(s) | 143, 280 |
| AluBI | AGCT | 1 cut(s) | 148 |
| AluI | AGCT | 1 cut(s) | 148 |
| Ama87I | CYCGRG | 1 cut(s) | 270 |
| Aor13HI | TCCGGA | 1 cut(s) | 313 |
| AoxI | GGCC | 1 cut(s) | 71 |
| AspS9I | GGNCC | 1 cut(s) | 71 |
| AvaI | CYCGRG | 1 cut(s) | 270 |
| BbsI | GAAGAC | 1 cut(s) | 302 |
| BccI | CCATC | 1 cut(s) | 32 |
| BciVI | GTATCC | 1 cut(s) | 241 |
| BfuI | GTATCC | 1 cut(s) | 241 |
| BmeT110I | CYCGRG | 1 cut(s) | 270 |
| BmgT120I | GGNCC | 1 cut(s) | 71 |
| BpiI | GAAGAC | 1 cut(s) | 302 |
| BsaWI | WCCGGW | 1 cut(s) | 313 |
| Bse3DI | GCAATG | 1 cut(s) | 15 |
| BseAI | TCCGGA | 1 cut(s) | 313 |
| BseMI | GCAATG | 1 cut(s) | 15 |
| BseMII | CTCAG | 1 cut(s) | 20 |
| BshFI | GGCC | 1 cut(s) | 73 |
| BsiHKCI | CYCGRG | 1 cut(s) | 270 |
| BsiSI | CCGG | 1 cut(s) | 314 |
| BsnI | GGCC | 1 cut(s) | 73 |
| BsoBI | CYCGRG | 1 cut(s) | 270 |
| Bsp13I | TCCGGA | 1 cut(s) | 313 |
| Bsp143I | GATC | 2 cut(s) | 53, 254 |
| BspACI | CCGC | 1 cut(s) | 227 |
| BspANI | GGCC | 1 cut(s) | 73 |
| BspCNI | CTCAG | 1 cut(s) | 21 |
| BspEI | TCCGGA | 1 cut(s) | 313 |
| BsrDI | GCAATG | 1 cut(s) | 15 |
| BssMI | GATC | 2 cut(s) | 53, 254 |
| Bst4CI | ACNGT | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 1 cut(s) | 267 |
| BstDEI | CTNAG | 1 cut(s) | 29 |
| BstKTI | GATC | 2 cut(s) | 56, 257 |
| BstMBI | GATC | 2 cut(s) | 53, 254 |
| BstV2I | GAAGAC | 1 cut(s) | 302 |
| BsuI | GTATCC | 1 cut(s) | 241 |
| BsuRI | GGCC | 1 cut(s) | 73 |
| BtsIMutI | CAGTG | 1 cut(s) | 63 |
| Cac8I | GCNNGC | 1 cut(s) | 267 |
| Cfr13I | GGNCC | 1 cut(s) | 71 |
| Csp6I | GTAC | 1 cut(s) | 249 |
| CviAII | CATG | 1 cut(s) | 44 |
| CviJI | RGCY | 3 cut(s) | 5, 73, 148 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 73, 148 |
| CviQI | GTAC | 1 cut(s) | 249 |
| DdeI | CTNAG | 1 cut(s) | 29 |
| DpnI | GATC | 2 cut(s) | 55, 256 |
| DpnII | GATC | 2 cut(s) | 53, 254 |
| Eco88I | CYCGRG | 1 cut(s) | 270 |
| FaeI | CATG | 1 cut(s) | 47 |
| FaiI | YATR | 4 cut(s) | 45, 182, 184, 325 |
| FatI | CATG | 1 cut(s) | 43 |
| FblI | GTMKAC | 1 cut(s) | 172 |
| HaeIII | GGCC | 1 cut(s) | 73 |
| HapII | CCGG | 1 cut(s) | 314 |
| Hin1II | CATG | 1 cut(s) | 47 |
| HpaII | CCGG | 1 cut(s) | 314 |
| Hpy166II | GTNNAC | 2 cut(s) | 167, 173 |
| Hpy188I | TCNGA | 1 cut(s) | 30 |
| Hpy188III | TCNNGA | 2 cut(s) | 143, 314 |
| Hpy8I | GTNNAC | 2 cut(s) | 167, 173 |
| HpyAV | CCTTC | 1 cut(s) | 55 |
| HpyCH4III | ACNGT | 1 cut(s) | 164 |
| HpyCH4IV | ACGT | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 1 cut(s) | 20 |
| HpyF3I | CTNAG | 1 cut(s) | 29 |
| HpySE526I | ACGT | 1 cut(s) | 169 |
| Hsp92II | CATG | 1 cut(s) | 47 |
| Kpn2I | TCCGGA | 1 cut(s) | 313 |
| Kzo9I | GATC | 2 cut(s) | 53, 254 |
| LpnPI | CCDG | 1 cut(s) | 100 |
| MaeII | ACGT | 1 cut(s) | 169 |
| MalI | GATC | 2 cut(s) | 55, 256 |
| MboI | GATC | 2 cut(s) | 53, 254 |
| MboII | GAAGA | 1 cut(s) | 302 |
| MnlI | CCTC | 3 cut(s) | 82, 164, 251 |
| MroI | TCCGGA | 1 cut(s) | 313 |
| MspI | CCGG | 1 cut(s) | 314 |
| NdeII | GATC | 2 cut(s) | 53, 254 |
| NlaIII | CATG | 1 cut(s) | 47 |
| PspPI | GGNCC | 1 cut(s) | 71 |
| RsaI | GTAC | 1 cut(s) | 250 |
| RsaNI | GTAC | 1 cut(s) | 249 |
| Sau3AI | GATC | 2 cut(s) | 53, 254 |
| Sau96I | GGNCC | 1 cut(s) | 71 |
| SetI | ASST | 3 cut(s) | 150, 156, 172 |
| SsiI | CCGC | 1 cut(s) | 227 |
| TaaI | ACNGT | 1 cut(s) | 164 |
| TaiI | ACGT | 1 cut(s) | 172 |
| TaqI | TCGA | 2 cut(s) | 243, 257 |
| TscAI | CASTG | 1 cut(s) | 63 |
| TspDTI | ATGAA | 1 cut(s) | 4 |
| TspRI | CASTG | 1 cut(s) | 63 |
| XmiI | GTMKAC | 1 cut(s) | 172 |