Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003863.1

Orthogroup ID

OG0016960

Physical Location & Seq

Genomic Coordinates Forward (+)

45582 .. 46700

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003863.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggctaaaatgttcattgcagaatctctgagtagtgatggtcatgtattgcgatcagtgaaggacaaagagccaaagagtaaaatggagggagtgaaagaaaaggaaagatacagggggaagtattgggcaaaatctattcaagagcttgacctctctaactgtgaacgtagtactccaagctatcgccttcttccggaagattatccaataccctcagcaagtctgagatcagaacttcctgctcaggttttgaatgaccattgggtatctgtgacttcaagaagtgaagataactcttttaaacataagcgcagaaatcagtatgaagaaagaacacgcaaggaagacagtgtgagctctgttgggctggtgttagtagaagatggtaatgggctcggcagatgggcatgcggagcaaagcaatgcttgggaagtactgcggtaaagatagcggcaacactgacagcagaggagacgtggattagtgagcaactggttcatggtagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

170

Amino Acids

19.2

Weight (kDa)

8.39

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016960)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g07420
rosa_chinensis	RchiOBHm_Chr3g0485381
rosa_multiflora	Rmu_sc0000455.1_g000014 Rmu_sc0003863.1_g000006
rosa_roxburghii	Rroxscaffold_1G00046570 Rroxscaffold_2G00094580 Rroxscaffold_7G00158850 Rroxscaffold_7G00198560
rosa_rugosa	Rorug02G0195600 Rorug06G0009900 Rorug07G0338500
rosa_samantha	Rh6BG316300 Rh6BG316600
rosa_wichuraiana	Rw5G040660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	3 cut(s)	414, 443, 455
AfaI	GTAC	2 cut(s)	175, 439
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	143, 256, 282
AjiI	CACGTC	1 cut(s)	480
AluBI	AGCT	3 cut(s)	148, 183, 360
AluI	AGCT	3 cut(s)	148, 183, 360
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	315
BanII	GRGCYC	2 cut(s)	362, 399
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	32, 380, 399
BcoDI	GTCTC	1 cut(s)	470
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
BmcAI	AGTACT	2 cut(s)	175, 439
BmgBI	CACGTC	1 cut(s)	480
BpiI	GAAGAC	1 cut(s)	354
Bpu10I	CCTNAGC	2 cut(s)	217, 246
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	501
Bse3DI	GCAATG	2 cut(s)	15, 431
BseAI	TCCGGA	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	2 cut(s)	15, 431
BseMII	CTCAG	4 cut(s)	20, 218, 231, 260
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	470
BsmBI	CGTCTC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	362, 399
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	53, 230
BspACI	CCGC	3 cut(s)	414, 443, 455
BspCNI	CTCAG	4 cut(s)	21, 219, 230, 259
BspEI	TCCGGA	1 cut(s)	196
BsrDI	GCAATG	2 cut(s)	15, 431
BsrI	ACTGG	1 cut(s)	501
BssMI	GATC	2 cut(s)	53, 230
Bst4CI	ACNGT	2 cut(s)	164, 353
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	4 cut(s)	29, 217, 227, 246
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	56, 233
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	2 cut(s)	53, 230
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	480
BtsIMutI	CAGTG	3 cut(s)	63, 358, 461
Cac8I	GCNNGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	174, 438
CviAII	CATG	3 cut(s)	44, 411, 503
CviJI	RGCY	7 cut(s)	5, 73, 148, 183, 360, 370, 397
CviKI_1	RGCY	7 cut(s)	5, 73, 148, 183, 360, 370, 397
CviQI	GTAC	2 cut(s)	174, 438
DdeI	CTNAG	4 cut(s)	29, 217, 227, 246
DpnI	GATC	2 cut(s)	55, 232
DpnII	GATC	2 cut(s)	53, 230
DraI	TTTAAA	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	360
Eco24I	GRGCYC	2 cut(s)	362, 399
Eco53kI	GAGCTC	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	360
EcoT38I	GRGCYC	2 cut(s)	362, 399
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	3 cut(s)	47, 414, 506
FaiI	YATR	5 cut(s)	45, 309, 327, 412, 504
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	3 cut(s)	43, 410, 502
Fnu4HI	GCNGC	1 cut(s)	456
FriOI	GRGCYC	2 cut(s)	362, 399
Fsp4HI	GCNGC	1 cut(s)	456
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	1 cut(s)	456
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	3 cut(s)	47, 414, 506
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	30, 228, 235
Hpy188III	TCNNGA	3 cut(s)	143, 197, 282
Hpy8I	GTNNAC	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	55, 200
HpyCH4III	ACNGT	2 cut(s)	164, 353
HpyCH4IV	ACGT	2 cut(s)	169, 479
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	4 cut(s)	29, 217, 227, 246
HpySE526I	ACGT	2 cut(s)	169, 479
Hsp92II	CATG	3 cut(s)	47, 414, 506
HspAI	GCGC	1 cut(s)	313
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	53, 230
LmnI	GCTCC	1 cut(s)	416
LpnPI	CCDG	6 cut(s)	100, 210, 233, 255, 356, 482
MaeII	ACGT	2 cut(s)	169, 479
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	55, 232
MboI	GATC	2 cut(s)	53, 230
MboII	GAAGA	6 cut(s)	185, 212, 302, 341, 359, 395
MhlI	GDGCHC	2 cut(s)	362, 399
MnlI	CCTC	4 cut(s)	82, 164, 226, 466
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	303
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	53, 230
NlaIII	CATG	3 cut(s)	47, 414, 506
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	414
PaeI	GCATGC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	362
RsaI	GTAC	2 cut(s)	175, 439
RsaNI	GTAC	2 cut(s)	174, 438
SacI	GAGCTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	53, 230
ScaI	AGTACT	2 cut(s)	175, 439
SduI	GDGCHC	2 cut(s)	362, 399
SetI	ASST	7 cut(s)	150, 156, 172, 185, 252, 362, 482
SphI	GCATGC	1 cut(s)	414
SsiI	CCGC	3 cut(s)	414, 443, 455
SstI	GAGCTC	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	164, 353
TaiI	ACGT	2 cut(s)	172, 482
TatI	WGTACW	2 cut(s)	173, 437
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	3 cut(s)	63, 358, 468
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	4, 342, 491
TspRI	CASTG	3 cut(s)	63, 358, 468
XceI	RCATGY	1 cut(s)	414
ZrmI	AGTACT	2 cut(s)	175, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.