Rmu_sc0000472.1_g000020

Belongs to the universal ribosomal protein uL22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000472.1
OG0016302
Physical Location & Seq
Reverse (-)
99495 .. 102535
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
atgactaatcgacaacctcaacgactaatccaccagcaacctcacagcggcgaaccaccaccgcgacctcctccgaaccacctcttccaattcaacttcaggctattgcgcagctcattccaagccatggtcggttggcaaaggaattgtatacaatccctaactcgacattttgggaaagcaacactactcgaggccacttcaactcctcagacccaacaatcactcttgcggcgccccttttatcactactctcaacactcgggaatctccagttcaaggaacttactttcggattcctcgtctaatgtcccatctcccaataccttaaacccaccgcctccgtctttgaaacaagttcaatatgtcttaaagggcgtaactcaggaccctaacaagatcgacctggttggcaaactggttcgtggtatgcgtgttgaagatgtgttgtcacaattgtcagtgacagacaagcaagctgcaaaaaccatgtatcaggctatttactcagctcgagcagatgcaacttataaacatgggttggatccagaccgtctacttgttgctggggcatctattggaaagggattcgtgggattcagcaagaagagactggcctaccatggtaaaggcaatggaattaaagtgagaccaaaacaccaactgatggtggttttaagggagattgcccctgaagaggaggcggagatagccagacaaagagccgacaattttctttatctcagtaagcgcctcaggctcactaaggaggaaaataagaatattcctctccagcttattcggaaaaacaaaggcaaatttagtgatggtgaaccaagtggtttggcttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L22

Protein Analysis

284

Amino Acids

31.92

Weight (kDa)

10.3

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L22 PF00237 125 - 216 2e-14 Ribosomal protein L22p/L17e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016302)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00560
malus_domestica MD03G1130200.v1.1 MD06G1011100.v1.1
prunus_persica Prupe.2G035300_v2.0.a1 Prupe.7G027600_v2.0.a1
pyrus_communis pycom06g00910
rosa_chinensis RchiOBHm_Chr4g0386011
rosa_laevigata RLG00000010181
rosa_multiflora Rmu_sc0000472.1_g000020
rosa_rugosa Rorug03G0306200
rosa_samantha Rh4AG010000 Rh4BG007000 Rh4CG010700 Rh4DG008100
rosa_wichuraiana Rw4G000140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
Acc16I TGCGCA 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 2 cut(s) 127, 667
AccI GTMKAC 2 cut(s) 151, 556
AccII CGCG 1 cut(s) 64
AciI CCGC 5 cut(s) 48, 62, 232, 338, 704
AclWI GGATC 2 cut(s) 539, 552
AcsI RAATTY 1 cut(s) 818
AcuI CTGAAG 2 cut(s) 82, 714
AcyI GRCGYC 1 cut(s) 235
AfiI CCNNNNNNNGG 5 cut(s) 47, 127, 279, 667, 697
AgsI TTSAA 6 cut(s) 94, 204, 279, 352, 362, 440
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 4 cut(s) 114, 479, 512, 796
AluI AGCT 4 cut(s) 114, 479, 512, 796
Alw26I GTCTC 2 cut(s) 604, 643
AlwI GGATC 2 cut(s) 539, 552
Ama87I CYCGRG 3 cut(s) 191, 262, 513
AoxI GGCC 2 cut(s) 195, 615
ApeKI GCWGC 2 cut(s) 111, 479
ApoI RAATTY 1 cut(s) 818
AspLEI GCGC 3 cut(s) 111, 237, 753
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 842
AvaI CYCGRG 3 cut(s) 191, 262, 513
AvaII GGWCC 1 cut(s) 388
AxyI CCTNAGG 1 cut(s) 755
BamHI GGATCC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 123, 466
BccI CCATC 3 cut(s) 322, 661, 821
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 604, 643
BfoI RGCGCY 2 cut(s) 238, 754
BisI GCNGC 4 cut(s) 49, 112, 233, 480
BlsI GCNGC 4 cut(s) 50, 113, 234, 481
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 388
BmeT110I CYCGRG 3 cut(s) 191, 262, 513
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 3 cut(s) 236, 390, 546
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 511, 581
BpmI CTGGAG 2 cut(s) 256, 776
BsaHI GRCGYC 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 643
BsaJI CCNNGG 2 cut(s) 126, 622
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 127, 279, 667, 697
Bse1I ACTGG 3 cut(s) 273, 423, 618
Bse21I CCTNAGG 1 cut(s) 755
Bse3DI GCAATG 1 cut(s) 640
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 126, 622
BseLI CCNNNNNNNGG 5 cut(s) 47, 127, 279, 667, 697
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 5 cut(s) 224, 398, 522, 757, 769
BseNI ACTGG 3 cut(s) 273, 423, 618
BseRI GAGGAG 3 cut(s) 60, 198, 713
BseXI GCAGC 2 cut(s) 123, 466
BseYI CCCAGC 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 197, 617
BshNI GGYRCC 1 cut(s) 234
BsiHKCI CYCGRG 3 cut(s) 191, 262, 513
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 5 cut(s) 47, 127, 279, 667, 697
BsmAI GTCTC 2 cut(s) 604, 643
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 197, 617
Bso31I GGTCTC 1 cut(s) 643
BsoBI CYCGRG 3 cut(s) 191, 262, 513
Bsp143I GATC 2 cut(s) 399, 544
Bsp19I CCATGG 2 cut(s) 126, 622
BspACI CCGC 5 cut(s) 48, 62, 232, 338, 704
BspANI GGCC 2 cut(s) 197, 617
BspCNI CTCAG 5 cut(s) 223, 397, 521, 756, 768
BspFNI CGCG 1 cut(s) 64
BspHI TCATGA 1 cut(s) 851
BspLI GGNNCC 3 cut(s) 236, 390, 546
BspPI GGATC 2 cut(s) 539, 552
BspT107I GGYRCC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 640
BsrI ACTGG 3 cut(s) 273, 423, 618
BssECI CCNNGG 2 cut(s) 126, 622
BssMI GATC 2 cut(s) 399, 544
BssNAI GTATAC 1 cut(s) 152
BssNI GRCGYC 1 cut(s) 235
BssT1I CCWWGG 2 cut(s) 126, 622
Bst1107I GTATAC 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 3 cut(s) 89, 602, 690
BstACI GRCGYC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 6 cut(s) 210, 384, 508, 743, 755, 765
BstDSI CCRYGG 2 cut(s) 126, 622
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 2 cut(s) 238, 754
BstHHI GCGC 3 cut(s) 111, 237, 753
BstKTI GATC 2 cut(s) 402, 547
BstMAI GTCTC 2 cut(s) 604, 643
BstMBI GATC 2 cut(s) 399, 544
BstMWI GCNNNNNNNGC 2 cut(s) 710, 757
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 123, 466
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
BstZ17I GTATAC 1 cut(s) 152
Bsu36I CCTNAGG 1 cut(s) 755
BsuRI GGCC 2 cut(s) 197, 617
BtgI CCRYGG 2 cut(s) 126, 622
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 1 cut(s) 477
CciI TCATGA 1 cut(s) 851
CfoI GCGC 3 cut(s) 111, 237, 753
Cfr13I GGNCC 1 cut(s) 388
CsiI ACCWGGT 1 cut(s) 405
CviAII CATG 5 cut(s) 127, 490, 536, 623, 852
DdeI CTNAG 6 cut(s) 210, 384, 508, 743, 755, 765
DinI GGCGCC 1 cut(s) 236
DpnI GATC 2 cut(s) 401, 546
DpnII GATC 2 cut(s) 399, 544
Eam1104I CTCTTC 3 cut(s) 89, 602, 690
EarI CTCTTC 3 cut(s) 89, 602, 690
EciI GGCGGA 1 cut(s) 719
Eco130I CCWWGG 2 cut(s) 126, 622
Eco31I GGTCTC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 82, 714
Eco81I CCTNAGG 1 cut(s) 755
Eco88I CYCGRG 3 cut(s) 191, 262, 513
EcoO109I RGGNCCY 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 126, 622
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
ErhI CCWWGG 2 cut(s) 126, 622
FaeI CATG 5 cut(s) 130, 493, 539, 626, 855
FaiI YATR 9 cut(s) 128, 152, 366, 431, 491, 531, 537, 624, 853
FaqI GGGAC 1 cut(s) 296
FatI CATG 5 cut(s) 126, 489, 535, 622, 851
FblI GTMKAC 2 cut(s) 151, 556
Fnu4HI GCNGC 4 cut(s) 49, 112, 233, 480
Fsp4HI GCNGC 4 cut(s) 49, 112, 233, 480
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 3 cut(s) 110, 236, 752
GluI GCNGC 4 cut(s) 49, 112, 233, 480
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 2 cut(s) 256, 776
HaeII RGCGCY 2 cut(s) 238, 754
HaeIII GGCC 2 cut(s) 197, 617
HhaI GCGC 3 cut(s) 111, 237, 753
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 5 cut(s) 130, 493, 539, 626, 855
Hin6I GCGC 3 cut(s) 109, 235, 751
HinP1I GCGC 3 cut(s) 109, 235, 751
HinfI GANTC 4 cut(s) 267, 296, 588, 597
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 3 cut(s) 152, 557, 833
Hpy188I TCNGA 4 cut(s) 75, 213, 295, 804
Hpy188III TCNNGA 4 cut(s) 264, 386, 548, 852
Hpy8I GTNNAC 3 cut(s) 152, 557, 833
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4V TGCA 2 cut(s) 482, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 710, 757
HpyF3I CTNAG 6 cut(s) 210, 384, 508, 743, 755, 765
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 5 cut(s) 130, 493, 539, 626, 855
HspAI GCGC 3 cut(s) 109, 235, 751
KasI GGCGCC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 399, 544
Lsp1109I GCAGC 2 cut(s) 123, 466
LweI GCATC 2 cut(s) 511, 581
MabI ACCWGGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 379, 450, 463
MalI GATC 2 cut(s) 401, 546
MboI GATC 2 cut(s) 399, 544
MboII GAAGA 4 cut(s) 76, 452, 619, 707
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 1 cut(s) 544
MluCI AATT 6 cut(s) 89, 145, 455, 639, 730, 818
Mly113I GGCGCC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 522
MseI TTAA 4 cut(s) 329, 371, 642, 677
MspA1I CMGCKG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 710, 757
NarI GGCGCC 1 cut(s) 235
NcoI CCATGG 2 cut(s) 126, 622
NdeII GATC 2 cut(s) 399, 544
NlaIII CATG 5 cut(s) 130, 493, 539, 626, 855
NlaIV GGNNCC 3 cut(s) 236, 390, 546
NmuCI GTSAC 2 cut(s) 450, 463
NsbI TGCGCA 1 cut(s) 110
PaeR7I CTCGAG 2 cut(s) 191, 513
PagI TCATGA 1 cut(s) 851
PcsI WCGNNNNNNNCGW 2 cut(s) 299, 430
PfeI GAWTC 4 cut(s) 267, 296, 588, 597
PflMI CCANNNNNTGG 2 cut(s) 127, 667
PkrI GCNGC 4 cut(s) 50, 113, 234, 481
PluTI GGCGCC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 388
PsiI TTATAA 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 3 cut(s) 236, 390, 546
PspPI GGNCC 1 cut(s) 388
PspPPI RGGWCCY 1 cut(s) 388
PspXI VCTCGAGB 2 cut(s) 191, 513
PsuI RGATCY 1 cut(s) 544
SaqAI TTAA 4 cut(s) 329, 371, 642, 677
SatI GCNGC 4 cut(s) 49, 112, 233, 480
Sau3AI GATC 2 cut(s) 399, 544
Sau96I GGNCC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 407
SexAI ACCWGGT 1 cut(s) 405
SfaNI GCATC 2 cut(s) 511, 581
SfoI GGCGCC 1 cut(s) 236
Sfr274I CTCGAG 2 cut(s) 191, 513
SinI GGWCC 1 cut(s) 388
SlaI CTCGAG 2 cut(s) 191, 513
SmlI CTYRAG 2 cut(s) 191, 513
SmoI CTYRAG 2 cut(s) 191, 513
Sse9I AATT 6 cut(s) 89, 145, 455, 639, 730, 818
SsiI CCGC 5 cut(s) 48, 62, 232, 338, 704
SspDI GGCGCC 1 cut(s) 234
SspI AATATT 1 cut(s) 784
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 2 cut(s) 126, 622
TaaI ACNGT 1 cut(s) 554
TaqI TCGA 5 cut(s) 10, 166, 192, 402, 514
TasI AATT 6 cut(s) 89, 145, 455, 639, 730, 818
TauI GCSGC 2 cut(s) 51, 235
TfiI GAWTC 4 cut(s) 267, 296, 588, 597
Tru1I TTAA 4 cut(s) 329, 371, 642, 677
Tru9I TTAA 4 cut(s) 329, 371, 642, 677
TscAI CASTG 1 cut(s) 468
TseFI GTSAC 2 cut(s) 450, 463
TseI GCWGC 2 cut(s) 111, 479
Tsp45I GTSAC 2 cut(s) 450, 463
TspDTI ATGAA 1 cut(s) 840
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 468
Van91I CCANNNNNTGG 2 cut(s) 127, 667
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 1 cut(s) 818
XhoI CTCGAG 2 cut(s) 191, 513
XmiI GTMKAC 2 cut(s) 151, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.