Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000493.1

Orthogroup ID

OG0017816

Physical Location & Seq

Genomic Coordinates Reverse (-)

219798 .. 220391

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atggaaccacctccaggatcaaatctccaagcattcctacagattcaatattcccaatctcttctctccctcagcgacgatctcttaaagtccaacaactttgtagagggtgtttctcacaagatcaggtgtcagatcaaggagctagagagggtttcaggagtcaagagcagttctctcacggtggatggagttccagtggattcatacctgactaggtttgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

75

Amino Acids

8.3

Weight (kDa)

5.64

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	15 - 74	3e-08	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017816)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048981
rosa_multiflora	Rmu_sc0000366.1_g000016 Rmu_sc0000493.1_g000050 Rmu_sc0001891.1_g000049
rosa_roxburghii	Rroxscaffold_1G00032640 Rroxscaffold_6G00389340 Rroxscaffold_6G00417960
rosa_samantha	Rh1AG159500 Rh1CG148700 Rh5BG332100 Rh5CG428800 Rh5DG343900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	3 cut(s)	146, 216, 226
BfmI	CTRYAG	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu10I	CCTNAGC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	32
Bsp143I	GATC	4 cut(s)	17, 79, 123, 135
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	197
BssMI	GATC	4 cut(s)	17, 79, 123, 135
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	4 cut(s)	20, 82, 126, 138
BstMBI	GATC	4 cut(s)	17, 79, 123, 135
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	204
CviJI	RGCY	1 cut(s)	145
CviKI_1	RGCY	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	4 cut(s)	19, 81, 125, 137
DpnII	GATC	4 cut(s)	17, 79, 123, 135
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	13
FaiI	YATR	1 cut(s)	208
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	3 cut(s)	146, 216, 226
HinfI	GANTC	3 cut(s)	43, 162, 203
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	159, 166
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	17, 79, 123, 135
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	27, 112, 144, 210, 224
MaeI	CTAG	3 cut(s)	146, 216, 226
MalI	GATC	4 cut(s)	19, 81, 125, 137
MboI	GATC	4 cut(s)	17, 79, 123, 135
MboII	GAAGA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	21, 80, 100, 144
MseI	TTAA	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	17, 79, 123, 135
NlaIV	GGNNCC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	43, 203
PfoI	TCCNGGA	1 cut(s)	13
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	4 cut(s)	17, 79, 123, 135
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	5 cut(s)	13, 131, 147, 213, 221
SfcI	CTRYAG	1 cut(s)	38
SspI	AATATT	1 cut(s)	50
SspMI	CTAG	3 cut(s)	146, 216, 226
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	43, 203
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	204
XspI	CTAG	3 cut(s)	146, 216, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.