Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017816

Physical Location & Seq

Genomic Coordinates Forward (+)

2872351 .. 2875952

Gene Structure 3602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATTGACACCAGCACCTCCTTCGACGCCTCGAGCTTATTCTCCGATCCGAGCCGCCTTGAGCTCGTTCTCCGACCCGAGCTCGTTCTTCCGTTCAATATTGCCAATCTCCGCGTCGGAACCCTCGATTCTCTTCTCTCCCTCGGCGACGATCTCTTAAAGTCCAACAACTTTGTAGAGGGTGTTTCTCATAAGATCAGGCGTCGGATCGAGGAGCTAGAGAGAGTTTTAGGAGTCGAGAAAAGCTCTCTTACCGTGGATGGAGTTCCAGCGGATTCATACCTCACTAGGTGCACCCTAGCAACTTCTACAAAGTTGTCTCACTTTTGGGGGTTTTTTCATTTATTCTTGAAGGCTTGTTTAGGGGAGCAGCCAGCTTTGGCACAATCATTTCCTATGAAAATCGAAAGTGAAGAACGTCCTTCATTGGTGCTCCCTCTTCAACTATCACTTCCTACGCTTAATACTTTAGAACATATTGGAGTACCCACCGTCTTTTTATCAAAATCTATTAATGCTATTGCTTTAGCCCTTTGTGGAGAGCTTGTCCAAGTATCGCAAACATGGTCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

191

Amino Acids

21.04

Weight (kDa)

5.36

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	29 - 97	1.4e-11	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017816)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048981
rosa_multiflora	Rmu_sc0000366.1_g000016 Rmu_sc0000493.1_g000050 Rmu_sc0001891.1_g000049
rosa_roxburghii	Rroxscaffold_1G00032640 Rroxscaffold_6G00389340 Rroxscaffold_6G00417960
rosa_samantha	Rh1AG159500 Rh1CG148700 Rh5BG332100 Rh5CG428800 Rh5DG343900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	574
AccII	CGCG	1 cut(s)	114
AciI	CCGC	3 cut(s)	55, 112, 272
AclWI	GGATC	2 cut(s)	41, 215
AcyI	GRCGYC	2 cut(s)	27, 202
AdeI	CACNNNGTG	1 cut(s)	291
AfaI	GTAC	1 cut(s)	486
AgsI	TTSAA	3 cut(s)	97, 352, 443
AluBI	AGCT	7 cut(s)	36, 64, 82, 217, 246, 377, 544
AluI	AGCT	7 cut(s)	36, 64, 82, 217, 246, 377, 544
Alw21I	GWGCWC	4 cut(s)	66, 84, 296, 435
Alw26I	GTCTC	1 cut(s)	324
Alw44I	GTGCAC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	41, 215
Ama87I	CYCGRG	2 cut(s)	31, 77
ApaLI	GTGCAC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	370
AseI	ATTAAT	1 cut(s)	513
AvaI	CYCGRG	2 cut(s)	31, 77
BaeGI	GKGCMC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	66, 84
Bbv12I	GWGCWC	4 cut(s)	66, 84, 296, 435
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	3 cut(s)	218, 288, 299
BisI	GCNGC	2 cut(s)	55, 371
BlsI	GCNGC	2 cut(s)	56, 372
BmeT110I	CYCGRG	2 cut(s)	31, 77
BmiI	GGNNCC	1 cut(s)	121
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpuEI	CTTGAG	1 cut(s)	80
BsaHI	GRCGYC	2 cut(s)	27, 202
BsaJI	CCNNGG	2 cut(s)	142, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
BseDI	CCNNGG	2 cut(s)	142, 255
BseGI	GGATG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	114
BsiHKAI	GWGCWC	4 cut(s)	66, 84, 296, 435
BsiHKCI	CYCGRG	2 cut(s)	31, 77
BsmAI	GTCTC	1 cut(s)	324
BsoBI	CYCGRG	2 cut(s)	31, 77
Bsp1286I	GDGCHC	4 cut(s)	66, 84, 296, 435
Bsp143I	GATC	4 cut(s)	46, 151, 195, 207
BspACI	CCGC	3 cut(s)	55, 112, 272
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	121
BspPI	GGATC	2 cut(s)	41, 215
BssECI	CCNNGG	2 cut(s)	142, 255
BssMI	GATC	4 cut(s)	46, 151, 195, 207
BssNI	GRCGYC	2 cut(s)	27, 202
Bst4CI	ACNGT	2 cut(s)	256, 493
Bst6I	CTCTTC	2 cut(s)	138, 444
BstACI	GRCGYC	2 cut(s)	27, 202
BstC8I	GCNNGC	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	4 cut(s)	49, 154, 198, 210
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	4 cut(s)	46, 151, 195, 207
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	375
CseI	GACGC	3 cut(s)	35, 103, 191
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	1 cut(s)	564
CviQI	GTAC	1 cut(s)	485
DpnI	GATC	4 cut(s)	48, 153, 197, 209
DpnII	GATC	4 cut(s)	46, 151, 195, 207
DraIII	CACNNNGTG	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	138, 444
EarI	CTCTTC	2 cut(s)	138, 444
Ecl136II	GAGCTC	2 cut(s)	64, 82
Eco24I	GRGCYC	2 cut(s)	66, 84
Eco53kI	GAGCTC	2 cut(s)	64, 82
Eco88I	CYCGRG	2 cut(s)	31, 77
EcoICRI	GAGCTC	2 cut(s)	64, 82
EcoT38I	GRGCYC	2 cut(s)	66, 84
FaeI	CATG	1 cut(s)	567
FaiI	YATR	6 cut(s)	192, 280, 398, 477, 565, 574
FatI	CATG	1 cut(s)	563
Fnu4HI	GCNGC	2 cut(s)	55, 371
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	2 cut(s)	66, 84
Fsp4HI	GCNGC	2 cut(s)	55, 371
FspBI	CTAG	3 cut(s)	218, 288, 299
GluI	GCNGC	2 cut(s)	55, 371
HgaI	GACGC	3 cut(s)	35, 103, 191
Hin1I	GRCGYC	2 cut(s)	27, 202
Hin1II	CATG	1 cut(s)	567
HinfI	GANTC	3 cut(s)	128, 234, 275
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	5 cut(s)	46, 51, 74, 119, 207
Hpy188III	TCNNGA	2 cut(s)	238, 349
Hpy8I	GTNNAC	1 cut(s)	294
Hpy99I	CGWCG	4 cut(s)	29, 119, 152, 207
HpyAV	CCTTC	3 cut(s)	31, 346, 432
HpyCH4III	ACNGT	2 cut(s)	256, 493
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	418
Hsp92I	GRCGYC	2 cut(s)	27, 202
Hsp92II	CATG	1 cut(s)	567
Kzo9I	GATC	4 cut(s)	46, 151, 195, 207
LmnI	GCTCC	3 cut(s)	214, 367, 438
LpnPI	CCDG	4 cut(s)	25, 184, 282, 387
Lsp1109I	GCAGC	1 cut(s)	382
MaeI	CTAG	3 cut(s)	218, 288, 299
MaeII	ACGT	1 cut(s)	418
MalI	GATC	4 cut(s)	48, 153, 197, 209
MboI	GATC	4 cut(s)	46, 151, 195, 207
MboII	GAAGA	4 cut(s)	80, 125, 425, 431
MhlI	GDGCHC	4 cut(s)	66, 84, 296, 435
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	4 cut(s)	97, 97, 185, 189
MnlI	CCTC	8 cut(s)	28, 40, 134, 152, 172, 205, 293, 447
MseI	TTAA	3 cut(s)	158, 462, 513
MspA1I	CMGCKG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	114
NdeII	GATC	4 cut(s)	46, 151, 195, 207
NlaIII	CATG	1 cut(s)	567
NlaIV	GGNNCC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	128, 275
PkrI	GCNGC	2 cut(s)	56, 372
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	574
Psp124BI	GAGCTC	2 cut(s)	66, 84
PspN4I	GGNNCC	1 cut(s)	121
PspXI	VCTCGAGB	1 cut(s)	31
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SacI	GAGCTC	2 cut(s)	66, 84
SaqAI	TTAA	3 cut(s)	158, 462, 513
SatI	GCNGC	2 cut(s)	55, 371
Sau3AI	GATC	4 cut(s)	46, 151, 195, 207
SchI	GAGTC	1 cut(s)	243
SduI	GDGCHC	4 cut(s)	66, 84, 296, 435
Sfr274I	CTCGAG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	31, 59
SmoI	CTYRAG	2 cut(s)	31, 59
SsiI	CCGC	3 cut(s)	55, 112, 272
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	3 cut(s)	218, 288, 299
SstI	GAGCTC	2 cut(s)	66, 84
TaaI	ACNGT	2 cut(s)	256, 493
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	6 cut(s)	24, 32, 126, 210, 237, 405
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	128, 275
Tru1I	TTAA	3 cut(s)	158, 462, 513
Tru9I	TTAA	3 cut(s)	158, 462, 513
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	267, 329, 413, 414
TspGWI	ACGGA	1 cut(s)	81
VneI	GTGCAC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	513
XhoI	CTCGAG	1 cut(s)	31
XspI	CTAG	3 cut(s)	218, 288, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.