Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0048981 |
| rosa_multiflora | Rmu_sc0000366.1_g000016 Rmu_sc0000493.1_g000050 Rmu_sc0001891.1_g000049 |
| rosa_roxburghii | Rroxscaffold_1G00032640 Rroxscaffold_6G00389340 Rroxscaffold_6G00417960 |
| rosa_samantha | Rh1AG159500 Rh1CG148700 Rh5BG332100 Rh5CG428800 Rh5DG343900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 81, 108 |
| AfaI | GTAC | 1 cut(s) | 14 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 70 |
| AjnI | CCWGG | 1 cut(s) | 69 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 77, 109 |
| AluBI | AGCT | 2 cut(s) | 169, 269 |
| AluI | AGCT | 2 cut(s) | 169, 269 |
| Alw26I | GTCTC | 1 cut(s) | 30 |
| AlwI | GGATC | 2 cut(s) | 81, 108 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 15 |
| BccI | CCATC | 1 cut(s) | 206 |
| BciT130I | CCWGG | 1 cut(s) | 71 |
| BcoDI | GTCTC | 1 cut(s) | 30 |
| BfaI | CTAG | 2 cut(s) | 170, 240 |
| BfmI | CTRYAG | 1 cut(s) | 109 |
| Bme1390I | CCNGG | 1 cut(s) | 71 |
| BmiI | GGNNCC | 1 cut(s) | 62 |
| BmrFI | CCNGG | 1 cut(s) | 71 |
| BmrI | ACTGGG | 1 cut(s) | 25 |
| BmuI | ACTGGG | 1 cut(s) | 25 |
| BpmI | CTGGAG | 1 cut(s) | 53 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 70 |
| Bse1I | ACTGG | 1 cut(s) | 20 |
| BseBI | CCWGG | 1 cut(s) | 71 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 70 |
| BseNI | ACTGG | 1 cut(s) | 20 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 70 |
| BsmAI | GTCTC | 1 cut(s) | 30 |
| BsmI | GAATGC | 1 cut(s) | 88 |
| Bsp143I | GATC | 4 cut(s) | 73, 113, 147, 159 |
| BspLI | GGNNCC | 1 cut(s) | 62 |
| BspPI | GGATC | 2 cut(s) | 81, 108 |
| BsrI | ACTGG | 1 cut(s) | 20 |
| BssMI | GATC | 4 cut(s) | 73, 113, 147, 159 |
| Bst2UI | CCWGG | 1 cut(s) | 71 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstKTI | GATC | 4 cut(s) | 76, 116, 150, 162 |
| BstMAI | GTCTC | 1 cut(s) | 30 |
| BstMBI | GATC | 4 cut(s) | 73, 113, 147, 159 |
| BstNI | CCWGG | 1 cut(s) | 71 |
| BstSCI | CCNGG | 1 cut(s) | 69 |
| BstSFI | CTRYAG | 1 cut(s) | 109 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CaiI | CAGNNNCTG | 1 cut(s) | 15 |
| Csp6I | GTAC | 1 cut(s) | 13 |
| CviJI | RGCY | 3 cut(s) | 134, 169, 269 |
| CviKI_1 | RGCY | 3 cut(s) | 134, 169, 269 |
| CviQI | GTAC | 1 cut(s) | 13 |
| DpnI | GATC | 4 cut(s) | 75, 115, 149, 161 |
| DpnII | GATC | 4 cut(s) | 73, 113, 147, 159 |
| EcoRII | CCWGG | 1 cut(s) | 69 |
| FaiI | YATR | 3 cut(s) | 58, 232, 277 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 77, 109 |
| FokI | GGATG | 1 cut(s) | 224 |
| FspBI | CTAG | 2 cut(s) | 170, 240 |
| GsuI | CTGGAG | 1 cut(s) | 53 |
| HinfI | GANTC | 2 cut(s) | 186, 227 |
| Hpy188I | TCNGA | 1 cut(s) | 159 |
| Hpy188III | TCNNGA | 2 cut(s) | 183, 190 |
| Hpy99I | CGWCG | 1 cut(s) | 52 |
| HpyAV | CCTTC | 1 cut(s) | 103 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyCH4IV | ACGT | 1 cut(s) | 47 |
| HpySE526I | ACGT | 1 cut(s) | 47 |
| Kzo9I | GATC | 4 cut(s) | 73, 113, 147, 159 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| LpnPI | CCDG | 4 cut(s) | 45, 56, 83, 168 |
| MaeI | CTAG | 2 cut(s) | 170, 240 |
| MaeII | ACGT | 1 cut(s) | 47 |
| MaeIII | GTNAC | 1 cut(s) | 202 |
| MalI | GATC | 4 cut(s) | 75, 115, 149, 161 |
| MboI | GATC | 4 cut(s) | 73, 113, 147, 159 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MlyI | GAGTC | 1 cut(s) | 195 |
| MmeI | TCCRAC | 1 cut(s) | 141 |
| MnlI | CCTC | 5 cut(s) | 77, 116, 124, 168, 245 |
| MspR9I | CCNGG | 1 cut(s) | 71 |
| Mva1269I | GAATGC | 1 cut(s) | 88 |
| MvaI | CCWGG | 1 cut(s) | 71 |
| NdeII | GATC | 4 cut(s) | 73, 113, 147, 159 |
| NlaIV | GGNNCC | 1 cut(s) | 62 |
| NmuCI | GTSAC | 1 cut(s) | 202 |
| PctI | GAATGC | 1 cut(s) | 88 |
| PfeI | GAWTC | 1 cut(s) | 227 |
| PfoI | TCCNGGA | 1 cut(s) | 69 |
| PleI | GAGTC | 1 cut(s) | 194 |
| PpsI | GAGTC | 1 cut(s) | 194 |
| Psp6I | CCWGG | 1 cut(s) | 69 |
| PspGI | CCWGG | 1 cut(s) | 69 |
| PspN4I | GGNNCC | 1 cut(s) | 62 |
| PstNI | CAGNNNCTG | 1 cut(s) | 15 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| RsaI | GTAC | 1 cut(s) | 14 |
| RsaNI | GTAC | 1 cut(s) | 13 |
| Sau3AI | GATC | 4 cut(s) | 73, 113, 147, 159 |
| SchI | GAGTC | 1 cut(s) | 195 |
| ScrFI | CCNGG | 1 cut(s) | 71 |
| SetI | ASST | 7 cut(s) | 14, 50, 69, 171, 237, 245, 271 |
| SfcI | CTRYAG | 1 cut(s) | 109 |
| SspMI | CTAG | 2 cut(s) | 170, 240 |
| StyD4I | CCNGG | 1 cut(s) | 69 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TaiI | ACGT | 1 cut(s) | 50 |
| TaqI | TCGA | 1 cut(s) | 96 |
| TfiI | GAWTC | 1 cut(s) | 227 |
| TseFI | GTSAC | 1 cut(s) | 202 |
| Tsp45I | GTSAC | 1 cut(s) | 202 |
| TspDTI | ATGAA | 2 cut(s) | 219, 237 |
| XspI | CTAG | 2 cut(s) | 170, 240 |