Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017816

Physical Location & Seq

Genomic Coordinates Reverse (-)

39502680 .. 39505940

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTAGCAGTGCGGGTGGTGTCTTTGCTGTCCAAAACTCGGCGTCGTCTTTATGGAACTCGCCTCCGGATCAAATCTCCAAGCATTCCTTCGACACTCCCCTGCGATTCAATATTCCCAATCTCCGCGTCGGAACCCTCGATTCTCTTCCCTCCCTCGCCGACGATCTCTTAAAGGAGGTTATCGACAGCATTCATGCTCAAGTTGCAAAGATTGAGGATGATCTCAAGGTTAAGTTAAATCATCGAAAGTTGTTGGATGGAATGTTGGAAATATGTGGAGTGCCGCCTGAAAAATTCAGAACTATTTATTCTAGTATCAACAAGTTAGACAAGCAGGAGCAGCCAGCTACGGCACAATTATTTCCTATGAAAATCGAAAGTGAAGAACGTCCTTCATTGGTGCTCCCTCTTCAACTATCACTTCCTACGCTTAATACTTTAGAACATGTTGGAGTACCCACCGTCTTTTTATCAAAATCTATTAATGCTATTGCTTTAGCCCTTTGTGGAGAGCTTGTCCAAGTATCCCAAACATGGTCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

182

Amino Acids

19.94

Weight (kDa)

5.53

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	12 - 83	4.4e-07	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017816)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048981
rosa_multiflora	Rmu_sc0000366.1_g000016 Rmu_sc0000493.1_g000050 Rmu_sc0001891.1_g000049
rosa_roxburghii	Rroxscaffold_1G00032640 Rroxscaffold_6G00389340 Rroxscaffold_6G00417960
rosa_samantha	Rh1AG159500 Rh1CG148700 Rh5BG332100 Rh5CG428800 Rh5DG343900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	547
AccII	CGCG	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	3 cut(s)	14, 127, 287
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	2 cut(s)	40, 537
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	2 cut(s)	112, 416
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	2 cut(s)	350, 517
AluI	AGCT	2 cut(s)	350, 517
Alw21I	GWGCWC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	78
Aor13HI	TCCGGA	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	296
AseI	ATTAAT	1 cut(s)	486
AsuNHI	GCTAGC	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	369
BciVI	GTATCC	1 cut(s)	538
BfaI	CTAG	2 cut(s)	6, 315
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	287, 344
BlsI	GCNGC	2 cut(s)	288, 345
BmiI	GGNNCC	1 cut(s)	136
BmtI	GCTAGC	1 cut(s)	9
BpuEI	CTTGAG	2 cut(s)	186, 212
BsaHI	GRCGYC	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 537
BseAI	TCCGGA	1 cut(s)	67
BseGI	GGATG	2 cut(s)	226, 265
BseLI	CCNNNNNNNGG	2 cut(s)	40, 537
BseXI	GCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	40, 537
BsmI	GAATGC	2 cut(s)	85, 192
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	70, 166, 223
BspACI	CCGC	3 cut(s)	14, 127, 287
BspEI	TCCGGA	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	136
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	78
BssMI	GATC	3 cut(s)	70, 166, 223
BssNI	GRCGYC	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	153, 417
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	7, 348
BstF5I	GGATG	2 cut(s)	226, 265
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	73, 169, 226
BstMBI	GATC	3 cut(s)	70, 166, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 206, 343
BstNSI	RCATGY	1 cut(s)	452
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	226, 265
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	7, 348
CseI	GACGC	2 cut(s)	33, 118
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	3 cut(s)	197, 449, 537
CviJI	RGCY	5 cut(s)	5, 346, 350, 503, 517
CviKI_1	RGCY	5 cut(s)	5, 346, 350, 503, 517
CviQI	GTAC	1 cut(s)	458
DpnI	GATC	3 cut(s)	72, 168, 225
DpnII	GATC	3 cut(s)	70, 166, 223
Eam1104I	CTCTTC	2 cut(s)	153, 417
EarI	CTCTTC	2 cut(s)	153, 417
FaeI	CATG	3 cut(s)	200, 452, 540
FaiI	YATR	7 cut(s)	55, 198, 277, 371, 450, 538, 547
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	3 cut(s)	196, 448, 536
FauI	CCCGC	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	287, 344
FokI	GGATG	2 cut(s)	233, 272
Fsp4HI	GCNGC	2 cut(s)	287, 344
FspBI	CTAG	2 cut(s)	6, 315
GluI	GCNGC	2 cut(s)	287, 344
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	2 cut(s)	33, 118
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	200, 452, 540
HinfI	GANTC	2 cut(s)	108, 143
HpaII	CCGG	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	134, 302
Hpy188III	TCNNGA	1 cut(s)	68
Hpy99I	CGWCG	3 cut(s)	49, 134, 167
HpyAV	CCTTC	2 cut(s)	100, 405
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 206, 343
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	200, 452, 540
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	70, 166, 223
LmnI	GCTCC	2 cut(s)	340, 411
LpnPI	CCDG	5 cut(s)	81, 116, 303, 323, 360
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	6, 315
MaeII	ACGT	1 cut(s)	391
MalI	GATC	3 cut(s)	72, 168, 225
MboI	GATC	3 cut(s)	70, 166, 223
MboII	GAAGA	3 cut(s)	140, 398, 404
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	2 cut(s)	296, 359
MmeI	TCCRAC	4 cut(s)	112, 237, 249, 433
MnlI	CCTC	7 cut(s)	75, 149, 163, 167, 172, 211, 420
MroI	TCCGGA	1 cut(s)	67
MseI	TTAA	5 cut(s)	173, 234, 239, 435, 486
MspI	CCGG	1 cut(s)	68
Mva1269I	GAATGC	2 cut(s)	85, 192
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	11, 206, 343
NdeII	GATC	3 cut(s)	70, 166, 223
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	200, 452, 540
NlaIV	GGNNCC	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	20
NspI	RCATGY	1 cut(s)	452
PciI	ACATGT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	2 cut(s)	85, 192
PfeI	GAWTC	2 cut(s)	108, 143
PkrI	GCNGC	2 cut(s)	288, 345
PscI	ACATGT	1 cut(s)	448
PshBI	ATTAAT	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SaqAI	TTAA	5 cut(s)	173, 234, 239, 435, 486
SatI	GCNGC	2 cut(s)	287, 344
Sau3AI	GATC	3 cut(s)	70, 166, 223
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	5 cut(s)	183, 234, 352, 394, 519
SmlI	CTYRAG	2 cut(s)	201, 227
SmoI	CTYRAG	2 cut(s)	201, 227
Sse9I	AATT	2 cut(s)	296, 359
SsiI	CCGC	3 cut(s)	14, 127, 287
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	6, 315
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	5 cut(s)	93, 141, 186, 247, 378
TasI	AATT	2 cut(s)	296, 359
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	2 cut(s)	108, 143
Tru1I	TTAA	5 cut(s)	173, 234, 239, 435, 486
Tru9I	TTAA	5 cut(s)	173, 234, 239, 435, 486
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	185, 386, 387
TspRI	CASTG	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	2 cut(s)	6, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.