Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017816

Physical Location & Seq

Genomic Coordinates Reverse (-)

46878070 .. 46881325

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTAGCAGTGCTTGGGTGGTGTCTTTGCTGTCCAAAACTCGGCGTCGTCTTTATGGAACTGCCTCCAGGATCAAATCTCCAAGCATTCCTTCGACACTCCCTCTACGATTCAATATTCCCAATCTCCGCGTCGGAACCCTCGATTCTCTTCTCTCCCTCGCCGACGATCTCTTAAAGTCCAACAACTTTGTAGAGGGTGTTTCTCATAAGATCGGGCGTCGGATCGAGGAGCTAGAGAGAGTTTTAGGAGTCGAGAGCAGCTCTCTTACCGTGGATGGAGTTCCGGTGGATTCATACCTCACTAGCCCGGATACTCCAGTTTTTGAATTAAGAGACACTCTCATGGGCAAATATGGGGAAGACTCGAAATTGATTTATGATCTTGCTTACCGGGTGCACCCTAGCAACTTCTACAAAGTTGTCTCACTTTTGGGGGTTTTTTCATTTATTCTTGAAGGCTTGTTTAGGGAGCAGCCAGCTACGGCACAATCATTTCCTATGAAAATCGAAAGTGAAGAACGTCCTTCATTGGTGCTCCCTCTTCAACTATCACTTCCTACGCTTAATACTTTAGAACATGTTGGAGTACCCACCGTCTTTTTATCAAAATCTATTTATGCTATTGCTTTAGCCCTTTGTGGAGAGCTTGTCCAAGTATCCCAAACATGGTCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

226

Amino Acids

25.0

Weight (kDa)

6.32

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	31 - 103	1.9e-13	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017816)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048981
rosa_multiflora	Rmu_sc0000366.1_g000016 Rmu_sc0000493.1_g000050 Rmu_sc0001891.1_g000049
rosa_roxburghii	Rroxscaffold_1G00032640 Rroxscaffold_6G00389340 Rroxscaffold_6G00417960
rosa_samantha	Rh1AG159500 Rh1CG148700 Rh5BG332100 Rh5CG428800 Rh5DG343900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	679
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	2 cut(s)	80, 233
AcyI	GRCGYC	2 cut(s)	46, 220
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	2 cut(s)	42, 669
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	4 cut(s)	115, 329, 458, 548
AjnI	CCWGG	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	4 cut(s)	235, 264, 482, 649
AluI	AGCT	4 cut(s)	235, 264, 482, 649
Alw21I	GWGCWC	2 cut(s)	402, 540
Alw26I	GTCTC	2 cut(s)	330, 430
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	80, 233
ApaLI	GTGCAC	1 cut(s)	398
ApeKI	GCWGC	2 cut(s)	261, 475
AsuC2I	CCSGG	2 cut(s)	311, 395
AsuNHI	GCTAGC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	402
BaeI	ACNNNNGTAYC	2 cut(s)	306, 339
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	402, 540
BbvI	GCAGC	2 cut(s)	273, 487
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	70
BciVI	GTATCC	2 cut(s)	307, 670
BcnI	CCSGG	2 cut(s)	311, 395
BcoDI	GTCTC	2 cut(s)	330, 430
BfaI	CTAG	4 cut(s)	6, 236, 306, 405
BfuI	GTATCC	2 cut(s)	307, 670
BisI	GCNGC	2 cut(s)	262, 476
BlsI	GCNGC	2 cut(s)	263, 477
Bme1390I	CCNGG	3 cut(s)	70, 311, 395
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	3 cut(s)	70, 311, 395
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	369
BplI	GAGNNNNNCTC	6 cut(s)	248, 280, 250, 282, 327, 359
BpmI	CTGGAG	2 cut(s)	52, 303
BpuMI	CCSGG	2 cut(s)	311, 395
BsaHI	GRCGYC	2 cut(s)	46, 220
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	286
BsaXI	ACNNNNNCTCC	4 cut(s)	273, 303, 636, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 669
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	42, 669
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	273, 487
Bsh1236I	CGCG	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	402, 540
BsiSI	CCGG	3 cut(s)	287, 311, 394
BslI	CCNNNNNNNGG	2 cut(s)	42, 669
BsmAI	GTCTC	2 cut(s)	330, 430
BsmI	GAATGC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	402, 540
Bsp143I	GATC	5 cut(s)	72, 169, 213, 225, 382
BspACI	CCGC	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	139
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	80, 233
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	5 cut(s)	72, 169, 213, 225, 382
BssNI	GRCGYC	2 cut(s)	46, 220
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	274, 598
Bst6I	CTCTTC	2 cut(s)	156, 549
BstACI	GRCGYC	2 cut(s)	46, 220
BstC8I	GCNNGC	2 cut(s)	7, 480
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	5 cut(s)	75, 172, 216, 228, 385
BstMAI	GTCTC	2 cut(s)	330, 430
BstMBI	GATC	5 cut(s)	72, 169, 213, 225, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	3 cut(s)	68, 309, 393
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	273, 487
BstV2I	GAAGAC	1 cut(s)	369
BsuI	GTATCC	2 cut(s)	307, 670
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	7, 480
CseI	GACGC	3 cut(s)	35, 121, 209
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	3 cut(s)	346, 581, 669
CviJI	RGCY	9 cut(s)	5, 235, 264, 309, 462, 478, 482, 635, 649
CviKI_1	RGCY	9 cut(s)	5, 235, 264, 309, 462, 478, 482, 635, 649
CviQI	GTAC	1 cut(s)	590
DpnI	GATC	5 cut(s)	74, 171, 215, 227, 384
DpnII	GATC	5 cut(s)	72, 169, 213, 225, 382
Eam1104I	CTCTTC	2 cut(s)	156, 549
EarI	CTCTTC	2 cut(s)	156, 549
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	349, 584, 672
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FatI	CATG	3 cut(s)	345, 580, 668
Fnu4HI	GCNGC	2 cut(s)	262, 476
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	262, 476
FspBI	CTAG	4 cut(s)	6, 236, 306, 405
GluI	GCNGC	2 cut(s)	262, 476
GsuI	CTGGAG	2 cut(s)	52, 303
HapII	CCGG	3 cut(s)	287, 311, 394
HgaI	GACGC	3 cut(s)	35, 121, 209
Hin1I	GRCGYC	2 cut(s)	46, 220
Hin1II	CATG	3 cut(s)	349, 584, 672
HinfI	GANTC	5 cut(s)	111, 146, 252, 293, 365
HpaII	CCGG	3 cut(s)	287, 311, 394
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	137, 225
Hpy188III	TCNNGA	2 cut(s)	256, 455
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	4 cut(s)	51, 137, 170, 225
HpyAV	CCTTC	3 cut(s)	102, 452, 537
HpyCH4III	ACNGT	2 cut(s)	274, 598
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	1 cut(s)	400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	523
Hsp92I	GRCGYC	2 cut(s)	46, 220
Hsp92II	CATG	3 cut(s)	349, 584, 672
Kzo9I	GATC	5 cut(s)	72, 169, 213, 225, 382
LmnI	GCTCC	3 cut(s)	232, 472, 543
LpnPI	CCDG	7 cut(s)	55, 82, 300, 324, 333, 407, 492
Lsp1109I	GCAGC	2 cut(s)	273, 487
MaeI	CTAG	4 cut(s)	6, 236, 306, 405
MaeII	ACGT	1 cut(s)	523
MalI	GATC	5 cut(s)	74, 171, 215, 227, 384
MboI	GATC	5 cut(s)	72, 169, 213, 225, 382
MboII	GAAGA	4 cut(s)	143, 374, 530, 536
MhlI	GDGCHC	2 cut(s)	402, 540
MluCI	AATT	2 cut(s)	329, 371
MlyI	GAGTC	2 cut(s)	261, 359
MmeI	TCCRAC	4 cut(s)	115, 203, 207, 565
MnlI	CCTC	8 cut(s)	76, 114, 152, 170, 190, 223, 311, 552
MseI	TTAA	3 cut(s)	176, 332, 567
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	3 cut(s)	287, 311, 394
MspR9I	CCNGG	3 cut(s)	70, 311, 395
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	311, 395
NdeII	GATC	5 cut(s)	72, 169, 213, 225, 382
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	349, 584, 672
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	22
NspI	RCATGY	1 cut(s)	584
PciI	ACATGT	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	111, 146, 293
PfoI	TCCNGGA	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	263, 477
PleI	GAGTC	2 cut(s)	260, 359
PpsI	GAGTC	2 cut(s)	260, 359
PscI	ACATGT	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	3 cut(s)	176, 332, 567
SatI	GCNGC	2 cut(s)	262, 476
Sau3AI	GATC	5 cut(s)	72, 169, 213, 225, 382
SchI	GAGTC	2 cut(s)	261, 359
ScrFI	CCNGG	3 cut(s)	70, 311, 395
SduI	GDGCHC	2 cut(s)	402, 540
SetI	ASST	6 cut(s)	237, 266, 303, 484, 526, 651
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	329, 371
SsiI	CCGC	1 cut(s)	130
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	4 cut(s)	6, 236, 306, 405
StyD4I	CCNGG	3 cut(s)	68, 309, 393
TaaI	ACNGT	2 cut(s)	274, 598
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	6 cut(s)	95, 144, 228, 255, 368, 510
TasI	AATT	2 cut(s)	329, 371
TfiI	GAWTC	3 cut(s)	111, 146, 293
Tru1I	TTAA	3 cut(s)	176, 332, 567
Tru9I	TTAA	3 cut(s)	176, 332, 567
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	2 cut(s)	261, 475
TspDTI	ATGAA	4 cut(s)	285, 435, 518, 519
TspRI	CASTG	1 cut(s)	16
VneI	GTGCAC	1 cut(s)	398
XceI	RCATGY	1 cut(s)	584
XspI	CTAG	4 cut(s)	6, 236, 306, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.