Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017816

Physical Location & Seq

Genomic Coordinates Reverse (-)

59415386 .. 59415935

Gene Structure 550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG428800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAACCACCTCCAGGATCAAATCTCCAAGCATTCCTTCGACACTCCCCTCTACAGATTCAATATTCCCAATCTCTTCTCTCCCTTAGCGACGATCTCTTAAAGTCCAAAAACTTTGTAGAGGGTGTTTCTCACAAGATCAGGTGTCAGATCAAGGAGCTAGAGAGGGTTTTAGGAGTCAAGAGCAGTTCTCTCACGGTGGATGGAGTTCCAGTGGATTCATACCTCACTAGGTATTCATCATATCACTTATCATTAGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

89

Amino Acids

9.95

Weight (kDa)

7.91

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	18 - 80	3.2e-07	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017816)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048981
rosa_multiflora	Rmu_sc0000366.1_g000016 Rmu_sc0000493.1_g000050 Rmu_sc0001891.1_g000049
rosa_roxburghii	Rroxscaffold_1G00032640 Rroxscaffold_6G00389340 Rroxscaffold_6G00417960
rosa_samantha	Rh1AG159500 Rh1CG148700 Rh5BG332100 Rh5CG428800 Rh5DG343900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	160, 260
AluI	AGCT	2 cut(s)	160, 260
AlwI	GGATC	1 cut(s)	25
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	15
BfaI	CTAG	2 cut(s)	161, 231
BfmI	CTRYAG	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bpu10I	CCTNAGC	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	32
Bsp143I	GATC	4 cut(s)	17, 94, 138, 150
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	17, 94, 138, 150
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	4 cut(s)	20, 97, 141, 153
BstMBI	GATC	4 cut(s)	17, 94, 138, 150
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	219
CviJI	RGCY	2 cut(s)	160, 260
CviKI_1	RGCY	2 cut(s)	160, 260
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	4 cut(s)	19, 96, 140, 152
DpnII	GATC	4 cut(s)	17, 94, 138, 150
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	13
FaiI	YATR	3 cut(s)	223, 244, 268
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FokI	GGATG	1 cut(s)	215
FspBI	CTAG	2 cut(s)	161, 231
HinfI	GANTC	3 cut(s)	58, 177, 218
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	86
Kzo9I	GATC	4 cut(s)	17, 94, 138, 150
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	3 cut(s)	27, 127, 225
MaeI	CTAG	2 cut(s)	161, 231
MalI	GATC	4 cut(s)	19, 96, 140, 152
MboI	GATC	4 cut(s)	17, 94, 138, 150
MboII	GAAGA	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	21, 60, 115, 159, 236
MseI	TTAA	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	17, 94, 138, 150
NlaIV	GGNNCC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	58, 218
PfoI	TCCNGGA	1 cut(s)	13
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	101
Sau3AI	GATC	4 cut(s)	17, 94, 138, 150
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	6 cut(s)	13, 146, 162, 228, 236, 262
SfcI	CTRYAG	1 cut(s)	53
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	2 cut(s)	161, 231
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	58, 218
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	210, 228
TspRI	CASTG	1 cut(s)	219
XspI	CTAG	2 cut(s)	161, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.