Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000515.1

Orthogroup ID

OG0007826

Physical Location & Seq

Genomic Coordinates Forward (+)

4450 .. 13228

Gene Structure 8779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000515.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atgcctgcggatttgtcgtgtggctatcggggccgttggttggggtggggcccgcgggggtggaggaggagctgcggcgtagggaatcatggtgggggcttaggcggggttaaagtcaagagaaggggagatgataccaaatacgtggctaaggttttggccaaaggtgttgattgtgatatagccttacttacagtagaaagtgaggaattttggaaaggagcagagccactccatttcggaagcttgccacatcttcaggaagcagtgactgttgtaggatatccccttggaggagataccatttcagtaacgaagggggttgtatcgcgtatagaggttacatcatatgctcatgggtcatctgatttgttgggcattcagattgatgcagcaataaatcctggtaatagtggtggtcctgcattcaatgaccaaggagagtgcattggtgtggcatttcaggtaaatttgctggcttgctttgtctctcactttttgaatgattatgagaggaacgggaagtacacaggtttcccttgccttggtgttatgttgcaaaagttggagaatcctgcattacgagcatgcttaaaagtagagtctattgagggtgtactggtgcgaagagtagaacccacttgtgatgcacataatgtactgaaggagggagacgtgattgtaagcttcgatgatgtgcatgtagggtgtgaaggaacagtaccatttcgatcaaacgagcgcattgcattccgctaccttattagccagaaatttgcaggtgatgttgcagatcttggtattattagagccggagaattcatgaaagtcaaagcagagttgaacccacgagtgcatttggtgccttatcatattgatggagggcagccctcttacttaattattgctggtttggtgtttaccccactctcagaaccattaatagatgaggagtgtgacgactctataggattgaaacttttggcaaaggcacgctactctttggctagattcaaaggagaacagattgtaatcctatcacaggtcttagcaaatgaagtaaatatagggtatgaagatatgagcaatcaacaggttttgaagttaaatggaactccaataaagaatattcgtcatttagcgcaccttgtagattcatgcaagcacaagtacttggtctttgaatttgaagacaactacataacagttctagaaagagaagctgcactagcttcttcaaccagcattctcaaagattacgggattccagctgaaagatcttccgatctgttggagccctacatagattcagttgaggacggccaagctgaccaggaggatttgggtgacagtccggtttcaaatctggaaattggctttgatggacttatttgggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

466

Amino Acids

50.81

Weight (kDa)

5.1

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47940 AT2G47940
fragaria_vesca	FvH4_2g24740 FvH4_2g24740 FvH4_2g24740 FvH4_2g24740 FvH4_2g24740 FvH4_2g24740 FvH4_2g24740
malus_domestica	MD00G1056100.v1.1 MD11G1298100.v1.1
prunus_persica	Prupe.8G252400_v2.0.a1
pyrus_communis	pycom11g26180
rosa_chinensis	RchiOBHm_Chr6g0292561
rosa_laevigata	RLG00000012009
rosa_multiflora	Rmu_sc0000515.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174930
rosa_rugosa	Rorug06G0228000 Rorug06G0228100
rosa_samantha	Rh6AG341200 Rh6BG348600 Rh6CG355500 Rh6DG341300
rosa_wichuraiana	Rw6G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	770
Acc36I	ACCTGC	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	862
AccII	CGCG	2 cut(s)	55, 331
AciI	CCGC	6 cut(s)	8, 53, 55, 75, 105, 754
AcoI	YGGCCR	2 cut(s)	159, 1321
AcsI	RAATTY	5 cut(s)	209, 469, 773, 818, 1184
AcuI	CTGAAG	2 cut(s)	242, 683
AfaI	GTAC	5 cut(s)	527, 618, 660, 723, 1172
AfiI	CCNNNNNNNGG	4 cut(s)	40, 293, 545, 1042
AjiI	CACGTC	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	403, 1332
AluBI	AGCT	7 cut(s)	72, 246, 687, 1223, 1232, 1271, 1328
AluI	AGCT	7 cut(s)	72, 246, 687, 1223, 1232, 1271, 1328
Alw26I	GTCTC	2 cut(s)	493, 666
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	4 cut(s)	31, 49, 159, 1321
ApaI	GGGCCC	1 cut(s)	53
ApeKI	GCWGC	4 cut(s)	72, 392, 886, 1223
ApoI	RAATTY	5 cut(s)	209, 469, 773, 818, 1184
AseI	ATTAAT	1 cut(s)	941
AspLEI	GCGC	2 cut(s)	744, 1144
AspS9I	GGNCC	4 cut(s)	31, 49, 50, 419
AsuHPI	GGTGA	2 cut(s)	794, 1358
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	862
BanII	GRGCYC	2 cut(s)	53, 1299
BarI	GAAGNNNNNNTAC	2 cut(s)	705, 737
BauI	CACGAG	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	1197
BbvI	GCAGC	4 cut(s)	59, 404, 898, 1210
BccI	CCATC	2 cut(s)	872, 1376
BceAI	ACGGC	2 cut(s)	18, 1336
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	2 cut(s)	405, 1334
BcoDI	GTCTC	2 cut(s)	493, 666
BfaI	CTAG	3 cut(s)	1008, 1211, 1229
BfmI	CTRYAG	1 cut(s)	966
BfuAI	ACCTGC	1 cut(s)	770
BglII	AGATCT	2 cut(s)	793, 1277
BisI	GCNGC	5 cut(s)	73, 76, 393, 887, 1224
BlsI	GCNGC	5 cut(s)	74, 77, 394, 888, 1225
BmcAI	AGTACT	1 cut(s)	1172
Bme1390I	CCNGG	2 cut(s)	405, 1334
Bme18I	GGWCC	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	676
BmgT120I	GGNCC	4 cut(s)	31, 49, 50, 419
BmiI	GGNNCC	5 cut(s)	32, 50, 51, 864, 1296
BmrFI	CCNGG	2 cut(s)	405, 1334
BmsI	GCATC	2 cut(s)	379, 637
BpiI	GAAGAC	1 cut(s)	1197
Bpu10I	CCTNAGC	2 cut(s)	100, 150
BsaAI	YACGTR	1 cut(s)	145
BsaBI	GATNNNNATC	1 cut(s)	1031
BsaJI	CCNNGG	4 cut(s)	53, 289, 436, 544
BsaWI	WCCGGW	1 cut(s)	1354
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 293, 545, 1042
Bse1I	ACTGG	1 cut(s)	624
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	1031
BseBI	CCWGG	2 cut(s)	405, 1334
BseDI	CCNNGG	4 cut(s)	53, 289, 436, 544
BseJI	GATNNNNATC	1 cut(s)	1031
BseLI	CCNNNNNNNGG	4 cut(s)	40, 293, 545, 1042
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	1 cut(s)	945
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	4 cut(s)	79, 82, 309, 965
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	4 cut(s)	59, 404, 898, 1210
BsgI	GTGCAG	1 cut(s)	1209
Bsh1236I	CGCG	2 cut(s)	55, 331
BshFI	GGCC	4 cut(s)	33, 51, 161, 1323
BshNI	GGYRCC	1 cut(s)	862
BsiSI	CCGG	2 cut(s)	813, 1355
BslI	CCNNNNNNNGG	4 cut(s)	40, 293, 545, 1042
BsmAI	GTCTC	2 cut(s)	493, 666
BsmBI	CGTCTC	1 cut(s)	666
BsmI	GAATGC	4 cut(s)	378, 425, 749, 1245
BsnI	GGCC	4 cut(s)	33, 51, 161, 1323
Bsp120I	GGGCCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	53, 1299
Bsp143I	GATC	4 cut(s)	731, 793, 1277, 1285
BspACI	CCGC	6 cut(s)	8, 53, 55, 75, 105, 754
BspANI	GGCC	4 cut(s)	33, 51, 161, 1323
BspCNI	CTCAG	1 cut(s)	944
BspFNI	CGCG	2 cut(s)	55, 331
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	5 cut(s)	32, 50, 51, 864, 1296
BspMI	ACCTGC	1 cut(s)	770
BspT107I	GGYRCC	1 cut(s)	862
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	4 cut(s)	53, 289, 436, 544
BssMI	GATC	4 cut(s)	731, 793, 1277, 1285
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	3 cut(s)	289, 436, 544
Bst2BI	CACGAG	1 cut(s)	849
Bst2UI	CCWGG	2 cut(s)	405, 1334
Bst4CI	ACNGT	5 cut(s)	196, 274, 721, 1207, 1352
Bst6I	CTCTTC	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	8 cut(s)	6, 53, 248, 477, 481, 589, 994, 1163
BstDEI	CTNAG	4 cut(s)	100, 150, 931, 1048
BstDSI	CCRYGG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	1040
BstFNI	CGCG	2 cut(s)	55, 331
BstHHI	GCGC	2 cut(s)	744, 1144
BstKTI	GATC	4 cut(s)	734, 796, 1280, 1288
BstMAI	GTCTC	2 cut(s)	493, 666
BstMBI	GATC	4 cut(s)	731, 793, 1277, 1285
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 584, 862, 1229
BstNI	CCWGG	2 cut(s)	405, 1334
BstNSI	RCATGY	2 cut(s)	591, 704
BstSCI	CCNGG	2 cut(s)	403, 1332
BstSFI	CTRYAG	1 cut(s)	966
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	2 cut(s)	55, 331
BstV1I	GCAGC	4 cut(s)	59, 404, 898, 1210
BstV2I	GAAGAC	1 cut(s)	1197
BstX2I	RGATCY	2 cut(s)	793, 1277
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	2 cut(s)	793, 1277
BsuRI	GGCC	4 cut(s)	33, 51, 161, 1323
BtgI	CCRYGG	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	770
Cac8I	GCNNGC	8 cut(s)	6, 53, 248, 477, 481, 589, 994, 1163
CaiI	CAGNNNCTG	1 cut(s)	272
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	2 cut(s)	744, 1144
Cfr13I	GGNCC	4 cut(s)	31, 49, 50, 419
Cfr42I	CCGCGG	1 cut(s)	56
Csp6I	GTAC	5 cut(s)	526, 617, 659, 722, 1171
CviAII	CATG	6 cut(s)	89, 356, 588, 701, 823, 1158
CviQI	GTAC	5 cut(s)	526, 617, 659, 722, 1171
DdeI	CTNAG	4 cut(s)	100, 150, 931, 1048
DpnI	GATC	4 cut(s)	733, 795, 1279, 1287
DpnII	GATC	4 cut(s)	731, 793, 1277, 1285
EaeI	YGGCCR	2 cut(s)	159, 1321
Eam1104I	CTCTTC	1 cut(s)	622
EarI	CTCTTC	1 cut(s)	622
Eco130I	CCWWGG	3 cut(s)	289, 436, 544
Eco24I	GRGCYC	2 cut(s)	53, 1299
Eco32I	GATATC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	242, 683
EcoNI	CCTNNNNNAGG	1 cut(s)	1040
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	818
EcoRII	CCWGG	2 cut(s)	403, 1332
EcoRV	GATATC	1 cut(s)	284
EcoT14I	CCWWGG	3 cut(s)	289, 436, 544
EcoT38I	GRGCYC	2 cut(s)	53, 1299
ErhI	CCWWGG	3 cut(s)	289, 436, 544
Esp3I	CGTCTC	1 cut(s)	666
FaeI	CATG	6 cut(s)	92, 359, 591, 704, 826, 1161
FatI	CATG	6 cut(s)	88, 355, 587, 700, 822, 1157
FauI	CCCGC	3 cut(s)	48, 60, 98
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	5 cut(s)	73, 76, 393, 887, 1224
FriOI	GRGCYC	2 cut(s)	53, 1299
Fsp4HI	GCNGC	5 cut(s)	73, 76, 393, 887, 1224
FspBI	CTAG	3 cut(s)	1008, 1211, 1229
GlaI	GCGC	2 cut(s)	743, 1143
GluI	GCNGC	5 cut(s)	73, 76, 393, 887, 1224
HaeIII	GGCC	4 cut(s)	33, 51, 161, 1323
HapII	CCGG	2 cut(s)	813, 1355
HhaI	GCGC	2 cut(s)	744, 1144
Hin1II	CATG	6 cut(s)	92, 359, 591, 704, 826, 1161
Hin6I	GCGC	2 cut(s)	742, 1142
HinP1I	GCGC	2 cut(s)	742, 1142
HindIII	AAGCTT	2 cut(s)	244, 685
HinfI	GANTC	8 cut(s)	85, 571, 602, 962, 1011, 1154, 1264, 1307
HpaII	CCGG	2 cut(s)	813, 1355
HphI	GGTGA	2 cut(s)	794, 1358
Hpy166II	GTNNAC	3 cut(s)	528, 617, 921
Hpy188I	TCNGA	5 cut(s)	242, 367, 384, 934, 1285
Hpy188III	TCNNGA	5 cut(s)	118, 260, 823, 1211, 1367
Hpy8I	GTNNAC	3 cut(s)	528, 617, 921
HpyAV	CCTTC	4 cut(s)	117, 310, 658, 707
HpyCH4III	ACNGT	5 cut(s)	196, 274, 721, 1207, 1352
HpyCH4IV	ACGT	2 cut(s)	144, 675
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 584, 862, 1229
HpyF3I	CTNAG	4 cut(s)	100, 150, 931, 1048
HpySE526I	ACGT	2 cut(s)	144, 675
Hsp92II	CATG	6 cut(s)	92, 359, 591, 704, 826, 1161
HspAI	GCGC	2 cut(s)	742, 1142
KspI	CCGCGG	1 cut(s)	56
Kzo9I	GATC	4 cut(s)	731, 793, 1277, 1285
LmnI	GCTCC	3 cut(s)	69, 221, 1294
Lsp1109I	GCAGC	4 cut(s)	59, 404, 898, 1210
LweI	GCATC	2 cut(s)	379, 637
MaeI	CTAG	3 cut(s)	1008, 1211, 1229
MaeII	ACGT	2 cut(s)	144, 675
MaeIII	GTNAC	5 cut(s)	268, 310, 340, 956, 1346
MalI	GATC	4 cut(s)	733, 795, 1279, 1287
MboI	GATC	4 cut(s)	731, 793, 1277, 1285
MboII	GAAGA	6 cut(s)	248, 639, 1088, 1202, 1227, 1272
MflI	RGATCY	2 cut(s)	793, 1277
MhlI	GDGCHC	2 cut(s)	53, 1299
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	7 cut(s)	209, 469, 773, 818, 900, 1184, 1371
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	611, 956
MmeI	TCCRAC	2 cut(s)	546, 1272
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	5 cut(s)	111, 593, 899, 941, 1106
MslI	CAYNNNNRTG	2 cut(s)	452, 876
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	55, 1271
MspI	CCGG	2 cut(s)	813, 1355
MspR9I	CCNGG	2 cut(s)	405, 1334
Mva1269I	GAATGC	4 cut(s)	378, 425, 749, 1245
MvaI	CCWGG	2 cut(s)	405, 1334
MvnI	CGCG	2 cut(s)	55, 331
MwoI	GCNNNNNNNGC	4 cut(s)	30, 584, 862, 1229
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	4 cut(s)	731, 793, 1277, 1285
NlaIII	CATG	6 cut(s)	92, 359, 591, 704, 826, 1161
NlaIV	GGNNCC	5 cut(s)	32, 50, 51, 864, 1296
NmuCI	GTSAC	3 cut(s)	268, 956, 1346
NspI	RCATGY	2 cut(s)	591, 704
PaeI	GCATGC	1 cut(s)	591
PagI	TCATGA	1 cut(s)	822
PaqCI	CACCTGC	1 cut(s)	770
PctI	GAATGC	4 cut(s)	378, 425, 749, 1245
PfeI	GAWTC	6 cut(s)	85, 571, 1011, 1154, 1264, 1307
PkrI	GCNGC	5 cut(s)	74, 77, 394, 888, 1225
PleI	GAGTC	2 cut(s)	610, 956
PpsI	GAGTC	2 cut(s)	610, 956
Ppu21I	YACGTR	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	403, 1332
PspGI	CCWGG	2 cut(s)	403, 1332
PspN4I	GGNNCC	5 cut(s)	32, 50, 51, 864, 1296
PspOMI	GGGCCC	1 cut(s)	49
PspPI	GGNCC	4 cut(s)	31, 49, 50, 419
PsrI	GAACNNNNNNTAC	2 cut(s)	509, 541
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	793, 1277
PvuII	CAGCTG	1 cut(s)	1271
RsaI	GTAC	5 cut(s)	527, 618, 660, 723, 1172
RsaNI	GTAC	5 cut(s)	526, 617, 659, 722, 1171
RseI	CAYNNNNRTG	2 cut(s)	452, 876
SacII	CCGCGG	1 cut(s)	56
SaqAI	TTAA	5 cut(s)	111, 593, 899, 941, 1106
SatI	GCNGC	5 cut(s)	73, 76, 393, 887, 1224
Sau3AI	GATC	4 cut(s)	731, 793, 1277, 1285
Sau96I	GGNCC	4 cut(s)	31, 49, 50, 419
ScaI	AGTACT	1 cut(s)	1172
SchI	GAGTC	2 cut(s)	611, 956
ScrFI	CCNGG	2 cut(s)	405, 1334
SduI	GDGCHC	2 cut(s)	53, 1299
SfaNI	GCATC	2 cut(s)	379, 637
SfcI	CTRYAG	1 cut(s)	966
Sfr303I	CCGCGG	1 cut(s)	56
SgrBI	CCGCGG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	452, 876
SphI	GCATGC	1 cut(s)	591
Sse9I	AATT	7 cut(s)	209, 469, 773, 818, 900, 1184, 1371
SsiI	CCGC	6 cut(s)	8, 53, 55, 75, 105, 754
SspI	AATATT	1 cut(s)	1129
SspMI	CTAG	3 cut(s)	1008, 1211, 1229
StyD4I	CCNGG	2 cut(s)	403, 1332
StyI	CCWWGG	3 cut(s)	289, 436, 544
TaaI	ACNGT	5 cut(s)	196, 274, 721, 1207, 1352
TaiI	ACGT	2 cut(s)	147, 678
TaqI	TCGA	2 cut(s)	690, 730
TasI	AATT	7 cut(s)	209, 469, 773, 818, 900, 1184, 1371
TatI	WGTACW	4 cut(s)	525, 616, 658, 1170
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	6 cut(s)	85, 571, 1011, 1154, 1264, 1307
Tru1I	TTAA	5 cut(s)	111, 593, 899, 941, 1106
Tru9I	TTAA	5 cut(s)	111, 593, 899, 941, 1106
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	3 cut(s)	268, 956, 1346
TseI	GCWGC	4 cut(s)	72, 392, 886, 1223
Tsp45I	GTSAC	3 cut(s)	268, 956, 1346
TspDTI	ATGAA	5 cut(s)	811, 839, 1071, 1089, 1146
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	419
VspI	ATTAAT	1 cut(s)	941
XagI	CCTNNNNNAGG	1 cut(s)	1040
XapI	RAATTY	5 cut(s)	209, 469, 773, 818, 1184
XbaI	TCTAGA	1 cut(s)	1210
XceI	RCATGY	2 cut(s)	591, 704
XspI	CTAG	3 cut(s)	1008, 1211, 1229
ZrmI	AGTACT	1 cut(s)	1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.