Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007826

Physical Location & Seq

Genomic Coordinates Forward (+)

54415329 .. 54422432

Gene Structure 7104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG341300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGCTGATTCGGTTAAAAAATGTGTACTGCACCCATACCGCTCCTGACTATTCCCTTCCTTGGCAAAAGCAAAGACAATTCACAAGTACAGGCAGTGCTTTTATGATTGGTGATGGTAAACTCTTGACAAATGCCCATTGTGTTGAACATTATACTCAGGTTAAAGTGAAGAGAAGGGGAGATGATACCAAATACGTGGCTAAGGTTTTGGCCAAAGGTGTTGATTGTGATATAGCCTTACTTACAGTAGAAAGTGAGGAATTTTGGAAAGGAGCAGAGCCACTCCATTTCGGAAGCTTGCCACATCTTCAGGAAGCAGTGACTGTTGTAGGATATCCCCTTGGAGGAGATACCATTTCAGTAACGAAGGGGGTTGTATCGCGTATAGAGGTTACATCATATGCTCATGGGTCATCTGATTTGTTGGGCATTCAGATTGATGCAGCAATAAATCCTGGTAATAGTGGTGGTCCTGCATTCAATGACCAAGGAGAGTGCATTGGTGTGGCATTTCAGGTCTACAGATCTGAAGAGGCCGAGAATATTGGATATGTGATTCCTACTACAGTTGTCTCTCACTTTTTGAATGATTATGAGAGGAACGGGAAGTACACAGGTTTCCCTTGCCTTGGTGTTATGTTGCAAAAGTTGGAGAATCCTGCATTACGAGCATGCTTAAAAGTAGAGTCTATTGAGGGTGTACTGGTGCGAAGAGTAGAACCCACTTGTGATGCACATAATGTACTAAAGGAGGGTGACGTGATTGTAAGCTTCGATGATGTGCATGTAGGGTGTGAAGGCACAGTACCATTTCGATCAAACGAGCGCATTGCATTCCGCTACCTTATTAGCCAGAAATTTGCAGGTGATGTTGCAGATCTTGGTATTATTAGAGCCGGAGAATTCATGAAAGTCAAAGCAGAGTTGAACCCACGAGTGCATTTGGTTCCTTATCATATTGATGGAGGGCAGCCCTCTTACTTAATTATTGCTGGTTTGGTGTTTACCCCACTCTCAGAACCATTAATAGATGAGGAGTGTGACGACTCTATAGGATTGAAACTTTTGGCAAAGGCACGCTACTCTTTGGCTAGATTCAAAGGAGAACAGATTGTAATCCTATCACAGGTCTTAGCAAATGAAGTAAATATAGGGTATGAAGATATGAGCAATCAACAGGTTTTGAAGTTAAATGGAACTCCAATAAAGAATATTCGTCATTTAGCGCACCTTGTAGATTCATGCAAGCACAAGTACTTGGTCTTTGAATTTGAAGACAACTACATAACAGTTCTAGAAAGAGAAGCTGCACTAGCTTCTTCAACCAGCATTCTCAAAGATTACGGGATTCCAGCTGAAAGATCTTCCGATCTGTTGGAGCCCTACATAGATTCAGTTGTGGACGGCCAAGCTGACCAGGAGGATTTGGGTGACAGTCCGGTTTCAAATCTGGAAATTGGCTTTGATGGACTTATTTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

494

Amino Acids

54.35

Weight (kDa)

5.07

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin	PF00089	10 - 192	9.8e-24	Trypsin
Trypsin_2	PF13365	31 - 169	1.1e-25	Trypsin-like peptidase domain
PDZ_3	PF17815	316 - 457	6.7e-46	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47940 AT2G47940
fragaria_vesca	FvH4_2g24740 FvH4_2g24740 FvH4_2g24740 FvH4_2g24740 FvH4_2g24740 FvH4_2g24740 FvH4_2g24740
malus_domestica	MD00G1056100.v1.1 MD11G1298100.v1.1
prunus_persica	Prupe.8G252400_v2.0.a1
pyrus_communis	pycom11g26180
rosa_chinensis	RchiOBHm_Chr6g0292561
rosa_laevigata	RLG00000012009
rosa_multiflora	Rmu_sc0000515.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174930
rosa_rugosa	Rorug06G0228000 Rorug06G0228100
rosa_samantha	Rh6AG341200 Rh6BG348600 Rh6CG355500 Rh6DG341300
rosa_wichuraiana	Rw6G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	854
Acc36I	ACCTGC	1 cut(s)	854
AccBSI	CCGCTC	1 cut(s)	41
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	1 cut(s)	382
AciI	CCGC	2 cut(s)	39, 838
AcoI	YGGCCR	2 cut(s)	210, 1405
AcsI	RAATTY	4 cut(s)	260, 857, 902, 1268
AcuI	CTGAAG	2 cut(s)	293, 549
AfaI	GTAC	7 cut(s)	26, 88, 611, 702, 744, 807, 1256
AfiI	CCNNNNNNNGG	4 cut(s)	60, 344, 629, 1126
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	2 cut(s)	454, 1416
AluBI	AGCT	6 cut(s)	297, 771, 1307, 1316, 1355, 1412
AluI	AGCT	6 cut(s)	297, 771, 1307, 1316, 1355, 1412
Alw26I	GTCTC	1 cut(s)	577
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	3 cut(s)	210, 534, 1405
ApeKI	GCWGC	3 cut(s)	443, 970, 1307
ApoI	RAATTY	4 cut(s)	260, 857, 902, 1268
AseI	ATTAAT	1 cut(s)	1025
AspLEI	GCGC	2 cut(s)	828, 1228
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	4 cut(s)	122, 767, 878, 1442
AvaII	GGWCC	1 cut(s)	470
BalI	TGGCCA	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	1383
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BauI	CACGAG	1 cut(s)	933
BbsI	GAAGAC	1 cut(s)	1281
BbvI	GCAGC	3 cut(s)	455, 982, 1294
BccI	CCATC	3 cut(s)	107, 956, 1460
BceAI	ACGGC	1 cut(s)	1420
BcgI	CGANNNNNNTGC	2 cut(s)	812, 846
BciT130I	CCWGG	2 cut(s)	456, 1418
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	3 cut(s)	1092, 1295, 1313
BfmI	CTRYAG	3 cut(s)	520, 564, 1050
BfuAI	ACCTGC	1 cut(s)	854
BglII	AGATCT	3 cut(s)	524, 877, 1361
BisI	GCNGC	3 cut(s)	444, 971, 1308
BlsI	GCNGC	3 cut(s)	445, 972, 1309
BmcAI	AGTACT	1 cut(s)	1256
Bme1390I	CCNGG	2 cut(s)	456, 1418
Bme18I	GGWCC	1 cut(s)	470
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	948, 1380
BmrFI	CCNGG	2 cut(s)	456, 1418
BmsI	GCATC	2 cut(s)	430, 721
BpiI	GAAGAC	1 cut(s)	1281
Bpu10I	CCTNAGC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	1115
BsaJI	CCNNGG	4 cut(s)	59, 340, 487, 628
BsaWI	WCCGGW	1 cut(s)	1438
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 344, 629, 1126
Bse1I	ACTGG	1 cut(s)	708
Bse3DI	GCAATG	1 cut(s)	828
Bse8I	GATNNNNATC	1 cut(s)	1115
BseBI	CCWGG	2 cut(s)	456, 1418
BseDI	CCNNGG	4 cut(s)	59, 340, 487, 628
BseJI	GATNNNNATC	1 cut(s)	1115
BseLI	CCNNNNNNNGG	4 cut(s)	60, 344, 629, 1126
BseMI	GCAATG	1 cut(s)	828
BseMII	CTCAG	2 cut(s)	170, 1029
BseNI	ACTGG	1 cut(s)	708
BseRI	GAGGAG	2 cut(s)	360, 1049
BseXI	GCAGC	3 cut(s)	455, 982, 1294
BsgI	GTGCAG	2 cut(s)	13, 1293
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	3 cut(s)	212, 536, 1407
BsiSI	CCGG	2 cut(s)	897, 1439
BslI	CCNNNNNNNGG	4 cut(s)	60, 344, 629, 1126
BsmAI	GTCTC	1 cut(s)	577
BsmI	GAATGC	4 cut(s)	429, 476, 833, 1329
BsnI	GGCC	3 cut(s)	212, 536, 1407
Bsp1286I	GDGCHC	1 cut(s)	1383
Bsp143I	GATC	5 cut(s)	524, 815, 877, 1361, 1369
BspACI	CCGC	2 cut(s)	39, 838
BspANI	GGCC	3 cut(s)	212, 536, 1407
BspCNI	CTCAG	2 cut(s)	169, 1028
BspFNI	CGCG	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	2 cut(s)	948, 1380
BspMI	ACCTGC	1 cut(s)	854
BsrBI	CCGCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	828
BsrI	ACTGG	1 cut(s)	708
BssECI	CCNNGG	4 cut(s)	59, 340, 487, 628
BssMI	GATC	5 cut(s)	524, 815, 877, 1361, 1369
BssSI	CACGAG	1 cut(s)	933
BssT1I	CCWWGG	4 cut(s)	59, 340, 487, 628
Bst2BI	CACGAG	1 cut(s)	933
Bst2UI	CCWGG	2 cut(s)	456, 1418
Bst4CI	ACNGT	6 cut(s)	247, 325, 568, 805, 1291, 1436
Bst6I	CTCTTC	3 cut(s)	164, 525, 706
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	4 cut(s)	299, 673, 1078, 1247
BstDEI	CTNAG	4 cut(s)	156, 201, 1015, 1132
BstENI	CCTNNNNNAGG	1 cut(s)	1124
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	828, 1228
BstKTI	GATC	5 cut(s)	527, 818, 880, 1364, 1372
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	5 cut(s)	524, 815, 877, 1361, 1369
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 1313
BstNI	CCWGG	2 cut(s)	456, 1418
BstNSI	RCATGY	2 cut(s)	675, 788
BstSCI	CCNGG	2 cut(s)	454, 1416
BstSFI	CTRYAG	3 cut(s)	520, 564, 1050
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	455, 982, 1294
BstV2I	GAAGAC	1 cut(s)	1281
BstX2I	RGATCY	3 cut(s)	524, 877, 1361
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	3 cut(s)	524, 877, 1361
BsuRI	GGCC	3 cut(s)	212, 536, 1407
BtrI	CACGTC	1 cut(s)	760
BtsI	GCAGTG	2 cut(s)	100, 324
BtsIMutI	CAGTG	2 cut(s)	100, 324
BveI	ACCTGC	1 cut(s)	854
Cac8I	GCNNGC	4 cut(s)	299, 673, 1078, 1247
CaiI	CAGNNNCTG	1 cut(s)	323
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	2 cut(s)	828, 1228
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	7 cut(s)	25, 87, 610, 701, 743, 806, 1255
CviAII	CATG	5 cut(s)	407, 672, 785, 907, 1242
CviQI	GTAC	7 cut(s)	25, 87, 610, 701, 743, 806, 1255
DdeI	CTNAG	4 cut(s)	156, 201, 1015, 1132
DpnI	GATC	5 cut(s)	526, 817, 879, 1363, 1371
DpnII	GATC	5 cut(s)	524, 815, 877, 1361, 1369
EaeI	YGGCCR	2 cut(s)	210, 1405
Eam1104I	CTCTTC	3 cut(s)	164, 525, 706
EarI	CTCTTC	3 cut(s)	164, 525, 706
Eco130I	CCWWGG	4 cut(s)	59, 340, 487, 628
Eco24I	GRGCYC	1 cut(s)	1383
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	2 cut(s)	293, 549
EcoNI	CCTNNNNNAGG	1 cut(s)	1124
EcoRI	GAATTC	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	454, 1416
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	4 cut(s)	59, 340, 487, 628
EcoT38I	GRGCYC	1 cut(s)	1383
ErhI	CCWWGG	4 cut(s)	59, 340, 487, 628
FaeI	CATG	5 cut(s)	410, 675, 788, 910, 1245
FatI	CATG	5 cut(s)	406, 671, 784, 906, 1241
FauNDI	CATATG	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	3 cut(s)	444, 971, 1308
FriOI	GRGCYC	1 cut(s)	1383
Fsp4HI	GCNGC	3 cut(s)	444, 971, 1308
FspBI	CTAG	3 cut(s)	1092, 1295, 1313
GlaI	GCGC	2 cut(s)	827, 1227
GluI	GCNGC	3 cut(s)	444, 971, 1308
HaeIII	GGCC	3 cut(s)	212, 536, 1407
HapII	CCGG	2 cut(s)	897, 1439
HhaI	GCGC	2 cut(s)	828, 1228
Hin1II	CATG	5 cut(s)	410, 675, 788, 910, 1245
Hin6I	GCGC	2 cut(s)	826, 1226
HinP1I	GCGC	2 cut(s)	826, 1226
HindIII	AAGCTT	2 cut(s)	295, 769
HinfI	GANTC	9 cut(s)	7, 556, 655, 686, 1046, 1095, 1238, 1348, 1391
HpaII	CCGG	2 cut(s)	897, 1439
HphI	GGTGA	4 cut(s)	122, 767, 878, 1442
Hpy166II	GTNNAC	7 cut(s)	25, 119, 520, 612, 701, 1005, 1402
Hpy188I	TCNGA	6 cut(s)	293, 418, 435, 529, 1018, 1369
Hpy188III	TCNNGA	6 cut(s)	44, 124, 311, 907, 1295, 1451
Hpy8I	GTNNAC	7 cut(s)	25, 119, 520, 612, 701, 1005, 1402
HpyAV	CCTTC	4 cut(s)	65, 168, 361, 791
HpyCH4III	ACNGT	6 cut(s)	247, 325, 568, 805, 1291, 1436
HpyCH4IV	ACGT	2 cut(s)	195, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 1313
HpyF3I	CTNAG	4 cut(s)	156, 201, 1015, 1132
HpySE526I	ACGT	2 cut(s)	195, 759
Hsp92II	CATG	5 cut(s)	410, 675, 788, 910, 1245
HspAI	GCGC	2 cut(s)	826, 1226
Kzo9I	GATC	5 cut(s)	524, 815, 877, 1361, 1369
LmnI	GCTCC	3 cut(s)	46, 272, 1378
Lsp1109I	GCAGC	3 cut(s)	455, 982, 1294
LweI	GCATC	2 cut(s)	430, 721
MaeI	CTAG	3 cut(s)	1092, 1295, 1313
MaeII	ACGT	2 cut(s)	195, 759
MaeIII	GTNAC	6 cut(s)	319, 361, 391, 755, 1040, 1430
MalI	GATC	5 cut(s)	526, 817, 879, 1363, 1371
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	5 cut(s)	524, 815, 877, 1361, 1369
MboII	GAAGA	8 cut(s)	181, 299, 542, 723, 1172, 1286, 1311, 1356
MflI	RGATCY	3 cut(s)	524, 877, 1361
MhlI	GDGCHC	1 cut(s)	1383
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	7 cut(s)	77, 260, 857, 902, 984, 1268, 1455
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	695, 1040
MmeI	TCCRAC	2 cut(s)	630, 1356
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	7 cut(s)	14, 162, 677, 983, 1025, 1190, 1483
MslI	CAYNNNNRTG	2 cut(s)	503, 960
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	1355
MspI	CCGG	2 cut(s)	897, 1439
MspR9I	CCNGG	2 cut(s)	456, 1418
Mva1269I	GAATGC	4 cut(s)	429, 476, 833, 1329
MvaI	CCWGG	2 cut(s)	456, 1418
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	668, 1313
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	5 cut(s)	524, 815, 877, 1361, 1369
NlaIII	CATG	5 cut(s)	410, 675, 788, 910, 1245
NlaIV	GGNNCC	2 cut(s)	948, 1380
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	4 cut(s)	319, 755, 1040, 1430
NspI	RCATGY	2 cut(s)	675, 788
PaeI	GCATGC	1 cut(s)	675
PagI	TCATGA	1 cut(s)	906
PaqCI	CACCTGC	1 cut(s)	854
PctI	GAATGC	4 cut(s)	429, 476, 833, 1329
PfeI	GAWTC	7 cut(s)	7, 556, 655, 1095, 1238, 1348, 1391
PkrI	GCNGC	3 cut(s)	445, 972, 1309
PleI	GAGTC	2 cut(s)	694, 1040
PpsI	GAGTC	2 cut(s)	694, 1040
Ppu21I	YACGTR	1 cut(s)	196
PshBI	ATTAAT	1 cut(s)	1025
Psp6I	CCWGG	2 cut(s)	454, 1416
PspGI	CCWGG	2 cut(s)	454, 1416
PspN4I	GGNNCC	2 cut(s)	948, 1380
PspPI	GGNCC	1 cut(s)	470
PsrI	GAACNNNNNNTAC	2 cut(s)	593, 625
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	3 cut(s)	524, 877, 1361
PvuII	CAGCTG	1 cut(s)	1355
RsaI	GTAC	7 cut(s)	26, 88, 611, 702, 744, 807, 1256
RsaNI	GTAC	7 cut(s)	25, 87, 610, 701, 743, 806, 1255
RseI	CAYNNNNRTG	2 cut(s)	503, 960
SaqAI	TTAA	7 cut(s)	14, 162, 677, 983, 1025, 1190, 1483
SatI	GCNGC	3 cut(s)	444, 971, 1308
Sau3AI	GATC	5 cut(s)	524, 815, 877, 1361, 1369
Sau96I	GGNCC	1 cut(s)	470
ScaI	AGTACT	1 cut(s)	1256
SchI	GAGTC	2 cut(s)	695, 1040
ScrFI	CCNGG	2 cut(s)	456, 1418
SduI	GDGCHC	1 cut(s)	1383
SfaNI	GCATC	2 cut(s)	430, 721
SfcI	CTRYAG	3 cut(s)	520, 564, 1050
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	2 cut(s)	503, 960
SphI	GCATGC	1 cut(s)	675
Sse9I	AATT	7 cut(s)	77, 260, 857, 902, 984, 1268, 1455
SsiI	CCGC	2 cut(s)	39, 838
SspI	AATATT	2 cut(s)	544, 1213
SspMI	CTAG	3 cut(s)	1092, 1295, 1313
StyD4I	CCNGG	2 cut(s)	454, 1416
StyI	CCWWGG	4 cut(s)	59, 340, 487, 628
TaaI	ACNGT	6 cut(s)	247, 325, 568, 805, 1291, 1436
TaiI	ACGT	2 cut(s)	198, 762
TaqI	TCGA	2 cut(s)	774, 814
TasI	AATT	7 cut(s)	77, 260, 857, 902, 984, 1268, 1455
TatI	WGTACW	6 cut(s)	24, 86, 609, 700, 742, 1254
TfiI	GAWTC	7 cut(s)	7, 556, 655, 1095, 1238, 1348, 1391
Tru1I	TTAA	7 cut(s)	14, 162, 677, 983, 1025, 1190, 1483
Tru9I	TTAA	7 cut(s)	14, 162, 677, 983, 1025, 1190, 1483
TscAI	CASTG	2 cut(s)	100, 324
TseFI	GTSAC	4 cut(s)	319, 755, 1040, 1430
TseI	GCWGC	3 cut(s)	443, 970, 1307
Tsp45I	GTSAC	4 cut(s)	319, 755, 1040, 1430
TspDTI	ATGAA	5 cut(s)	895, 923, 1155, 1173, 1230
TspRI	CASTG	2 cut(s)	100, 324
VpaK11BI	GGWCC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	1025
XagI	CCTNNNNNAGG	1 cut(s)	1124
XapI	RAATTY	4 cut(s)	260, 857, 902, 1268
XbaI	TCTAGA	1 cut(s)	1294
XceI	RCATGY	2 cut(s)	675, 788
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	3 cut(s)	1092, 1295, 1313
ZrmI	AGTACT	1 cut(s)	1256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.