Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000548.1

Orthogroup ID

OG0010062

Physical Location & Seq

Genomic Coordinates Reverse (-)

46183 .. 47392

Gene Structure 1210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgagctgtggcattgccaccacagccttcccttcagtcctatcttcctccaagtctaaattcgccactgcagtccagctccctagtgttggtgtcaatgcctcctccaggttctccatgtcagccgactggatgcccggccagccccggcctccttatcttgatggatccgctccaggtgactttggattcgacccgcttagactaggagaagtaccagagaacttagagaggttcaaggaatctgaactcattcactgcagatgggctatgcttgctgttccaggaattctagtaccagaagcattggggttggggaactgggtaaaggcacaagaatgggcagcaattccaggaggccaagccacttacctaggcaatccagttccatgggggactttgcctacagtattggtcatcgagttcctctccattgctttcgtagagcaccaacgcagcatggaaaaggacccggagaagaagaagtaccccggtggagcttttgaccccttgggttactccaaggaccctaagaagttcgaggaatacaaagtcaaagagatcaaaaatggtcggctcgcattgttggctttcgtgggattcgtagttcaacaatcggcgtaccctggcaccggaccattggagaatttggctactcacttggctgacccatggcacaacaacattggggatgtcattatccccaaagggatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009645 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010114 GO:0010218 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 map00196

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

238

Amino Acids

25.84

Weight (kDa)

6.11

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	51 - 205	1.3e-46	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54890 AT3G54890 AT3G54890 AT3G54890
fragaria_vesca	FvH4_7g19750 FvH4_7g19750
malus_domestica	MD07G1175900.v1.1
prunus_persica	Prupe.8G142700_v2.0.a1 Prupe.8G142700_v2.0.a1
pyrus_communis	pycom01g13730 pycom07g17010
rosa_chinensis	RchiOBHm_Chr1g0363641
rosa_laevigata	RLG00000027554
rosa_multiflora	Rmu_sc0000548.1_g000011
rosa_roxburghii	Rroxscaffold_4G00293020
rosa_rugosa	Rorug01G0308400
rosa_samantha	Rh1AG317300 Rh1BG280700 Rh1CG296800 Rh1DG311900
rosa_wichuraiana	Rw1G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	173
AciI	CCGC	2 cut(s)	171, 197
AclWI	GGATC	2 cut(s)	162, 175
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	59, 288, 646
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	4 cut(s)	216, 297, 488, 623
AfiI	CCNNNNNNNGG	3 cut(s)	89, 108, 632
AgsI	TTSAA	2 cut(s)	238, 611
AjnI	CCWGG	5 cut(s)	107, 175, 283, 352, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AloI	GAACNNNNNNTCC	2 cut(s)	591, 623
AluBI	AGCT	3 cut(s)	6, 79, 500
AluI	AGCT	3 cut(s)	6, 79, 500
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	162, 175
AoxI	GGCC	3 cut(s)	139, 149, 358
ApeKI	GCWGC	2 cut(s)	344, 456
ApoI	RAATTY	3 cut(s)	59, 288, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
Asp700I	GAANNNNTTC	1 cut(s)	252
AspA2I	CCTAGG	1 cut(s)	373
AspS9I	GGNCC	3 cut(s)	469, 526, 635
AsuC2I	CCSGG	4 cut(s)	138, 148, 473, 492
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	3 cut(s)	469, 526, 635
AvrII	CCTAGG	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	629
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	356, 468
BccI	CCATC	2 cut(s)	158, 258
BciT130I	CCWGG	5 cut(s)	109, 177, 285, 354, 627
BcnI	CCSGG	4 cut(s)	138, 148, 473, 492
BfaI	CTAG	4 cut(s)	84, 206, 293, 374
BfmI	CTRYAG	3 cut(s)	69, 259, 405
BisI	GCNGC	2 cut(s)	345, 457
BlnI	CCTAGG	1 cut(s)	373
BlsI	GCNGC	2 cut(s)	346, 458
Bme1390I	CCNGG	9 cut(s)	109, 138, 148, 177, 285, 354, 473, 492, 627
Bme18I	GGWCC	3 cut(s)	469, 526, 635
BmgT120I	GGNCC	3 cut(s)	469, 526, 635
BmiI	GGNNCC	4 cut(s)	169, 471, 528, 631
BmrFI	CCNGG	9 cut(s)	109, 138, 148, 177, 285, 354, 473, 492, 627
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
BpmI	CTGGAG	2 cut(s)	91, 159
BpuMI	CCSGG	4 cut(s)	138, 148, 473, 492
BsaJI	CCNNGG	8 cut(s)	146, 373, 389, 490, 510, 522, 625, 671
BsaWI	WCCGGW	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 108, 632
Bse1I	ACTGG	3 cut(s)	134, 326, 383
Bse3DI	GCAATG	2 cut(s)	12, 432
BseBI	CCWGG	5 cut(s)	109, 177, 285, 354, 627
BseDI	CCNNGG	8 cut(s)	146, 373, 389, 490, 510, 522, 625, 671
BseGI	GGATG	2 cut(s)	138, 697
BseLI	CCNNNNNNNGG	3 cut(s)	89, 108, 632
BseMI	GCAATG	2 cut(s)	12, 432
BseNI	ACTGG	3 cut(s)	134, 326, 383
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	356, 468
BshFI	GGCC	3 cut(s)	141, 151, 360
BshNI	GGYRCC	1 cut(s)	629
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	5 cut(s)	138, 148, 473, 492, 633
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	3 cut(s)	89, 108, 632
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	141, 151, 360
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	167, 561
Bsp19I	CCATGG	2 cut(s)	389, 671
BspACI	CCGC	2 cut(s)	171, 197
BspANI	GGCC	3 cut(s)	141, 151, 360
BspLI	GGNNCC	4 cut(s)	169, 471, 528, 631
BspMAI	CTGCAG	2 cut(s)	73, 263
BspPI	GGATC	2 cut(s)	162, 175
BspT107I	GGYRCC	1 cut(s)	629
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	12, 432
BsrI	ACTGG	3 cut(s)	134, 326, 383
BssECI	CCNNGG	8 cut(s)	146, 373, 389, 490, 510, 522, 625, 671
BssMI	GATC	2 cut(s)	167, 561
BssT1I	CCWWGG	5 cut(s)	373, 389, 510, 522, 671
Bst2UI	CCWGG	5 cut(s)	109, 177, 285, 354, 627
Bst4CI	ACNGT	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	143, 276, 579
BstDEI	CTNAG	3 cut(s)	200, 226, 531
BstDSI	CCRYGG	2 cut(s)	389, 671
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	138, 697
BstKTI	GATC	2 cut(s)	170, 564
BstMBI	GATC	2 cut(s)	167, 561
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 142, 275, 587
BstNI	CCWGG	5 cut(s)	109, 177, 285, 354, 627
BstSCI	CCNGG	9 cut(s)	107, 136, 146, 175, 283, 352, 471, 490, 625
BstSFI	CTRYAG	3 cut(s)	69, 259, 405
BstV1I	GCAGC	2 cut(s)	356, 468
BstX2I	RGATCY	1 cut(s)	167
BstXI	CCANNNNNNTGG	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	3 cut(s)	141, 151, 360
BtgI	CCRYGG	2 cut(s)	389, 671
BtsCI	GGATG	2 cut(s)	138, 697
BtsI	GCAGTG	2 cut(s)	66, 256
BtsIMutI	CAGTG	2 cut(s)	66, 256
Cac8I	GCNNGC	3 cut(s)	143, 276, 579
Cfr13I	GGNCC	3 cut(s)	469, 526, 635
Csp6I	GTAC	4 cut(s)	215, 296, 487, 622
CviAII	CATG	4 cut(s)	118, 390, 460, 672
CviQI	GTAC	4 cut(s)	215, 296, 487, 622
DdeI	CTNAG	3 cut(s)	200, 226, 531
DpnI	GATC	2 cut(s)	169, 563
DpnII	GATC	2 cut(s)	167, 561
EaeI	YGGCCR	1 cut(s)	139
Eco130I	CCWWGG	5 cut(s)	373, 389, 510, 522, 671
Eco47I	GGWCC	3 cut(s)	469, 526, 635
Eco57I	CTGAAG	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	106
EcoO109I	RGGNCCY	2 cut(s)	469, 526
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	5 cut(s)	107, 175, 283, 352, 625
EcoT14I	CCWWGG	5 cut(s)	373, 389, 510, 522, 671
ErhI	CCWWGG	5 cut(s)	373, 389, 510, 522, 671
FaeI	CATG	4 cut(s)	121, 393, 463, 675
FaiI	YATR	5 cut(s)	119, 272, 391, 461, 673
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	4 cut(s)	117, 389, 459, 671
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	345, 457
FokI	GGATG	2 cut(s)	145, 704
Fsp4HI	GCNGC	2 cut(s)	345, 457
FspBI	CTAG	4 cut(s)	84, 206, 293, 374
GluI	GCNGC	2 cut(s)	345, 457
GsuI	CTGGAG	2 cut(s)	91, 159
HaeIII	GGCC	3 cut(s)	141, 151, 360
HapII	CCGG	5 cut(s)	138, 148, 473, 492, 633
Hin1II	CATG	4 cut(s)	121, 393, 463, 675
HinfI	GANTC	3 cut(s)	189, 242, 600
HpaII	CCGG	5 cut(s)	138, 148, 473, 492, 633
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	37, 42
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	71, 261
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 142, 275, 587
HpyF3I	CTNAG	3 cut(s)	200, 226, 531
Hsp92II	CATG	4 cut(s)	121, 393, 463, 675
Kzo9I	GATC	2 cut(s)	167, 561
LmnI	GCTCC	3 cut(s)	84, 178, 497
Lsp1109I	GCAGC	2 cut(s)	356, 468
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	4 cut(s)	84, 206, 293, 374
MaeIII	GTNAC	2 cut(s)	179, 515
MalI	GATC	2 cut(s)	169, 563
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	2 cut(s)	167, 561
MboII	GAAGA	3 cut(s)	36, 490, 493
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	4 cut(s)	59, 288, 348, 646
MnlI	CCTC	8 cut(s)	58, 112, 115, 162, 225, 350, 437, 535
MroXI	GAANNNNTTC	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	337
MspI	CCGG	5 cut(s)	138, 148, 473, 492, 633
MspR9I	CCNGG	9 cut(s)	109, 138, 148, 177, 285, 354, 473, 492, 627
MvaI	CCWGG	5 cut(s)	109, 177, 285, 354, 627
MwoI	GCNNNNNNNGC	4 cut(s)	23, 142, 275, 587
NciI	CCSGG	4 cut(s)	138, 148, 473, 492
NcoI	CCATGG	2 cut(s)	389, 671
NdeII	GATC	2 cut(s)	167, 561
NlaIII	CATG	4 cut(s)	121, 393, 463, 675
NlaIV	GGNNCC	4 cut(s)	169, 471, 528, 631
NmuCI	GTSAC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	189, 242, 600
PfoI	TCCNGGA	2 cut(s)	283, 352
PkrI	GCNGC	2 cut(s)	346, 458
PpuMI	RGGWCCY	2 cut(s)	469, 526
Psp5II	RGGWCCY	2 cut(s)	469, 526
Psp6I	CCWGG	5 cut(s)	107, 175, 283, 352, 625
PspGI	CCWGG	5 cut(s)	107, 175, 283, 352, 625
PspN4I	GGNNCC	4 cut(s)	169, 471, 528, 631
PspPI	GGNCC	3 cut(s)	469, 526, 635
PspPPI	RGGWCCY	2 cut(s)	469, 526
PstI	CTGCAG	2 cut(s)	73, 263
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	4 cut(s)	216, 297, 488, 623
RsaNI	GTAC	4 cut(s)	215, 296, 487, 622
RseI	CAYNNNNRTG	1 cut(s)	337
SatI	GCNGC	2 cut(s)	345, 457
Sau3AI	GATC	2 cut(s)	167, 561
Sau96I	GGNCC	3 cut(s)	469, 526, 635
ScrFI	CCNGG	9 cut(s)	109, 138, 148, 177, 285, 354, 473, 492, 627
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	7 cut(s)	8, 81, 113, 181, 236, 375, 502
SfaNI	GCATC	1 cut(s)	123
SfcI	CTRYAG	3 cut(s)	69, 259, 405
SinI	GGWCC	3 cut(s)	469, 526, 635
SmiMI	CAYNNNNRTG	1 cut(s)	337
Sse9I	AATT	4 cut(s)	59, 288, 348, 646
SsiI	CCGC	2 cut(s)	171, 197
SspMI	CTAG	4 cut(s)	84, 206, 293, 374
StyD4I	CCNGG	9 cut(s)	107, 136, 146, 175, 283, 352, 471, 490, 625
StyI	CCWWGG	5 cut(s)	373, 389, 510, 522, 671
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	192, 420, 540
TasI	AATT	4 cut(s)	59, 288, 348, 646
TfiI	GAWTC	3 cut(s)	189, 242, 600
TscAI	CASTG	2 cut(s)	73, 263
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	344, 456
Tsp45I	GTSAC	1 cut(s)	179
TspRI	CASTG	2 cut(s)	73, 263
VpaK11BI	GGWCC	3 cut(s)	469, 526, 635
XagI	CCTNNNNNAGG	1 cut(s)	106
XapI	RAATTY	3 cut(s)	59, 288, 646
XmaJI	CCTAGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	4 cut(s)	84, 206, 293, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.