Rmu_sc0000556.1_g000030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000556.1
OG0018256
Physical Location & Seq
Forward (+)
140805 .. 146656
5852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000556.1_g000030.1.cds

Sequence Viewer

Length: 753 bp
ctgccctacacgctacaaccgccgcccataatagcagtggcagcgccgccgccaccgctaccagccccgatggccaccaactttggtagcagcacctactcaacagtccaatcatttttcacaactacaacaagttccaattttacctcgatagccggaatcgctgaaaatagacgaaagttccgatcagctatagtgaacttcacggctcaaaatcaaactcctccagccaaatcactgcaaaacaccaccacagatgtgactaggaggaagaggcgagcttgccggtgcccggattccgtcgtgggtcggccggaggaggaagaatcggaccgaagaggagaaaaggatcggggaagaagagagagaaaactggcaacccatccactgcaaatcactaactcgttacaaatcggcctaaagcagctccctagctcatcgccacaacgaggagtattgaagctgaaaaggagatggctcgccgttttgcccacatcgaaacccgatctgcaagaagaagaagaagaagaagaagaagaagaagagaggagggcacagcgacttcatctccatcaacaatccctcgctattatccaccttgccatacaagtcgtcagagcgggctctcttgaggaccttcagcgcggccttcttggtctcctctaccttgacgagcaggagctcgacgctctggttgatggtgttctctcgctactcgagctcgtcgaggctctccttgatcttgtgctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.96

Weight (kDa)

6.53

Isoelectric Point (pI)

79.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 288
AccBSI CCGCTC 1 cut(s) 620
AccII CGCG 1 cut(s) 645
AciI CCGC 7 cut(s) 20, 23, 47, 50, 56, 620, 645
AclWI GGATC 1 cut(s) 357
AcoI YGGCCR 2 cut(s) 72, 311
AcuI CTGAAG 1 cut(s) 623
AfiI CCNNNNNNNGG 2 cut(s) 292, 449
AgsI TTSAA 1 cut(s) 460
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 7 cut(s) 191, 281, 427, 435, 463, 682, 721
AluI AGCT 7 cut(s) 191, 281, 427, 435, 463, 682, 721
Alw21I GWGCWC 3 cut(s) 684, 723, 750
Alw26I GTCTC 1 cut(s) 662
AlwI GGATC 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 4 cut(s) 72, 311, 415, 646
ApeKI GCWGC 3 cut(s) 41, 90, 424
AspLEI GCGC 2 cut(s) 46, 645
AspS9I GGNCC 2 cut(s) 331, 634
AsuC2I CCSGG 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 2 cut(s) 331, 634
BaeGI GKGCMC 2 cut(s) 293, 556
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 288
BanII GRGCYC 3 cut(s) 626, 684, 723
Bbv12I GWGCWC 3 cut(s) 684, 723, 750
BbvI GCAGC 3 cut(s) 53, 102, 436
BccI CCATC 5 cut(s) 64, 390, 468, 579, 692
BceAI ACGGC 2 cut(s) 222, 467
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 3 cut(s) 264, 432, 751
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 47
BglI GCCNNNNNGGC 1 cut(s) 71
BisI GCNGC 7 cut(s) 23, 42, 47, 50, 91, 425, 646
BlsI GCNGC 7 cut(s) 24, 43, 48, 51, 92, 426, 647
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 331, 634
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 2 cut(s) 331, 634
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 292, 449
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 2 cut(s) 292, 449
BseNI ACTGG 1 cut(s) 378
BseRI GAGGAG 6 cut(s) 213, 332, 354, 465, 562, 650
BseSI GKGCMC 2 cut(s) 293, 556
BseX3I CGGCCG 1 cut(s) 311
BseXI GCAGC 3 cut(s) 53, 102, 436
Bsh1236I CGCG 1 cut(s) 645
Bsh1285I CGRYCG 1 cut(s) 314
BshFI GGCC 4 cut(s) 74, 313, 417, 648
BshNI GGYRCC 1 cut(s) 288
BsiEI CGRYCG 1 cut(s) 314
BsiHKAI GWGCWC 3 cut(s) 684, 723, 750
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 4 cut(s) 156, 286, 293, 314
BslI CCNNNNNNNGG 2 cut(s) 292, 449
BsmAI GTCTC 1 cut(s) 662
BsnI GGCC 4 cut(s) 74, 313, 417, 648
Bso31I GGTCTC 1 cut(s) 662
BsoBI CYCGRG 1 cut(s) 716
Bsp1286I GDGCHC 6 cut(s) 293, 556, 626, 684, 723, 750
Bsp143I GATC 4 cut(s) 185, 349, 505, 739
BspACI CCGC 7 cut(s) 20, 23, 47, 50, 56, 620, 645
BspANI GGCC 4 cut(s) 74, 313, 417, 648
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 1 cut(s) 290
BspPI GGATC 1 cut(s) 357
BspT107I GGYRCC 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 662
BsrBI CCGCTC 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 285
BsrI ACTGG 1 cut(s) 378
BssAI RCCGGY 1 cut(s) 285
BssMI GATC 4 cut(s) 185, 349, 505, 739
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 4 cut(s) 266, 331, 355, 537
BstC8I GCNNGC 4 cut(s) 279, 283, 480, 622
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 645
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 645
BstKTI GATC 4 cut(s) 188, 352, 508, 742
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 4 cut(s) 185, 349, 505, 739
BstMCI CGRYCG 1 cut(s) 314
BstMWI GCNNNNNNNGC 7 cut(s) 10, 19, 41, 55, 71, 161, 718
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 2 cut(s) 293, 556
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 3 cut(s) 53, 102, 436
BstZI CGGCCG 1 cut(s) 311
BsuRI GGCC 4 cut(s) 74, 313, 417, 648
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 3 cut(s) 42, 236, 386
BtsIMutI CAGTG 3 cut(s) 42, 236, 386
Cac8I GCNNGC 4 cut(s) 279, 283, 480, 622
CfoI GCGC 2 cut(s) 46, 645
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 331, 634
CpoI CGGWCCG 1 cut(s) 331
CseI GACGC 1 cut(s) 695
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CspI CGGWCCG 1 cut(s) 331
DpnI GATC 4 cut(s) 187, 351, 507, 741
DpnII GATC 4 cut(s) 185, 349, 505, 739
EaeI YGGCCR 2 cut(s) 72, 311
EagI CGGCCG 1 cut(s) 311
Eam1104I CTCTTC 4 cut(s) 266, 331, 355, 537
EarI CTCTTC 4 cut(s) 266, 331, 355, 537
Ecl136II GAGCTC 2 cut(s) 682, 721
EclXI CGGCCG 1 cut(s) 311
Eco24I GRGCYC 3 cut(s) 626, 684, 723
Eco31I GGTCTC 1 cut(s) 662
Eco47I GGWCC 2 cut(s) 331, 634
Eco52I CGGCCG 1 cut(s) 311
Eco53kI GAGCTC 2 cut(s) 682, 721
Eco57I CTGAAG 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 716
EcoICRI GAGCTC 2 cut(s) 682, 721
EcoO109I RGGNCCY 1 cut(s) 634
EcoT38I GRGCYC 3 cut(s) 626, 684, 723
FaiI YATR 3 cut(s) 29, 194, 605
FauI CCCGC 1 cut(s) 613
Fnu4HI GCNGC 7 cut(s) 23, 42, 47, 50, 91, 425, 646
FokI GGATG 1 cut(s) 369
FriOI GRGCYC 3 cut(s) 626, 684, 723
Fsp4HI GCNGC 7 cut(s) 23, 42, 47, 50, 91, 425, 646
FspBI CTAG 3 cut(s) 264, 432, 751
GlaI GCGC 2 cut(s) 45, 644
GluI GCNGC 7 cut(s) 23, 42, 47, 50, 91, 425, 646
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 4 cut(s) 74, 313, 417, 648
HapII CCGG 4 cut(s) 156, 286, 293, 314
HgaI GACGC 1 cut(s) 695
HhaI GCGC 2 cut(s) 46, 645
Hin6I GCGC 2 cut(s) 44, 643
HinP1I GCGC 2 cut(s) 44, 643
HinfI GANTC 3 cut(s) 159, 296, 326
HpaII CCGG 4 cut(s) 156, 286, 293, 314
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 185, 331, 617
Hpy188III TCNNGA 1 cut(s) 629
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 3 cut(s) 305, 689, 728
HpyAV CCTTC 2 cut(s) 647, 659
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 241, 391, 511
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 19, 41, 55, 71, 161, 718
HspAI GCGC 2 cut(s) 44, 643
Kzo9I GATC 4 cut(s) 185, 349, 505, 739
LmnI GCTCC 2 cut(s) 432, 679
LpnPI CCDG 9 cut(s) 75, 169, 240, 299, 306, 327, 359, 662, 677
Lsp1109I GCAGC 3 cut(s) 53, 102, 436
MaeI CTAG 3 cut(s) 264, 432, 751
MaeIII GTNAC 2 cut(s) 259, 405
MalI GATC 4 cut(s) 187, 351, 507, 741
MbiI CCGCTC 1 cut(s) 620
MboI GATC 4 cut(s) 185, 349, 505, 739
MhlI GDGCHC 6 cut(s) 293, 556, 626, 684, 723, 750
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 1 cut(s) 139
MluNI TGGCCA 1 cut(s) 74
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 4 cut(s) 156, 286, 293, 314
MspR9I CCNGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 7 cut(s) 10, 19, 41, 55, 71, 161, 718
NciI CCSGG 1 cut(s) 293
NdeII GATC 4 cut(s) 185, 349, 505, 739
NlaIV GGNNCC 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 716
PcsI WCGNNNNNNNCGW 2 cut(s) 181, 723
PfeI GAWTC 3 cut(s) 159, 296, 326
PkrI GCNGC 7 cut(s) 24, 43, 48, 51, 92, 426, 647
PpuMI RGGWCCY 1 cut(s) 634
Psp124BI GAGCTC 2 cut(s) 684, 723
Psp5II RGGWCCY 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 2 cut(s) 331, 634
PspPPI RGGWCCY 1 cut(s) 634
PspXI VCTCGAGB 1 cut(s) 716
RseI CAYNNNNRTG 1 cut(s) 257
Rsr2I CGGWCCG 1 cut(s) 331
RsrII CGGWCCG 1 cut(s) 331
SacI GAGCTC 2 cut(s) 684, 723
SatI GCNGC 7 cut(s) 23, 42, 47, 50, 91, 425, 646
Sau3AI GATC 4 cut(s) 185, 349, 505, 739
Sau96I GGNCC 2 cut(s) 331, 634
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 6 cut(s) 293, 556, 626, 684, 723, 750
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 716
SinI GGWCC 2 cut(s) 331, 634
SlaI CTCGAG 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 2 cut(s) 629, 716
SmoI CTYRAG 2 cut(s) 629, 716
Sse9I AATT 1 cut(s) 139
SsiI CCGC 7 cut(s) 20, 23, 47, 50, 56, 620, 645
SspMI CTAG 3 cut(s) 264, 432, 751
SstI GAGCTC 2 cut(s) 684, 723
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 5 cut(s) 149, 497, 684, 717, 726
TaqII GACCGA 1 cut(s) 348
TasI AATT 1 cut(s) 139
TauI GCSGC 4 cut(s) 25, 49, 52, 648
TfiI GAWTC 3 cut(s) 159, 296, 326
TscAI CASTG 3 cut(s) 42, 243, 393
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 41, 90, 424
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 3 cut(s) 42, 243, 393
VpaK11BI GGWCC 2 cut(s) 331, 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 716
XspI CTAG 3 cut(s) 264, 432, 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.