Rh1CG040900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018256
Physical Location & Seq
Reverse (-)
7668474 .. 7669228
755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG040900.1

Sequence Viewer

Length: 267 bp
ATGGGCACAGAATCAAGGGCACCAACTGTCATGAGATCCAGGTCCAGAGAGTTGGATCTCTATCTTCAAGCACATCAATTTTATCTCCATCAACCCCTCATTGTTGTCCCCCTCGCCGTACTCGTCGTCGGAGCAGGATTGCTTGAGGACCTTGACCGCGGCCTTCTTGGTCTCCTCGACCTTGACGAGCGTGATCTCAATGCTCTGGTTGATGGTGATCTCTTCCTCCTAGAGCTTGTCGAGGCTCTCCTTGGTCTCGTACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.72

Weight (kDa)

4.36

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 157, 159
AclWI GGATC 2 cut(s) 30, 63
AfaI GTAC 2 cut(s) 120, 261
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 176, 260
AlwI GGATC 2 cut(s) 30, 63
AoxI GGCC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 42, 148
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 42, 148
BaeGI GKGCMC 2 cut(s) 8, 22
BanI GGYRCC 1 cut(s) 19
BccI CCATC 2 cut(s) 96, 206
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 176, 260
BfaI CTAG 2 cut(s) 230, 265
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 40
Bme18I GGWCC 2 cut(s) 42, 148
BmgT120I GGNCC 2 cut(s) 42, 148
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 40
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 2 cut(s) 60, 216
BsaI GGTCTC 2 cut(s) 176, 260
BsaJI CCNNGG 2 cut(s) 157, 250
Bse8I GATNNNNATC 2 cut(s) 60, 216
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 157, 250
BseJI GATNNNNATC 2 cut(s) 60, 216
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 2 cut(s) 8, 22
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 19
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 176, 260
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 2 cut(s) 176, 260
Bsp1286I GDGCHC 2 cut(s) 8, 22
Bsp143I GATC 4 cut(s) 35, 55, 193, 217
BspACI CCGC 2 cut(s) 157, 159
BspANI GGCC 1 cut(s) 162
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 30, 63
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 2 cut(s) 176, 260
BssECI CCNNGG 2 cut(s) 157, 250
BssMI GATC 4 cut(s) 35, 55, 193, 217
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 227
BstDSI CCRYGG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 4 cut(s) 38, 58, 196, 220
BstMAI GTCTC 2 cut(s) 176, 260
BstMBI GATC 4 cut(s) 35, 55, 193, 217
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 2 cut(s) 8, 22
BstUI CGCG 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 35, 55
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 2 cut(s) 35, 55
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 157
CciI TCATGA 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 42, 148
Cfr42I CCGCGG 1 cut(s) 160
Csp6I GTAC 2 cut(s) 119, 260
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 162, 235, 245
CviKI_1 RGCY 3 cut(s) 162, 235, 245
CviQI GTAC 2 cut(s) 119, 260
DpnI GATC 4 cut(s) 37, 57, 195, 219
DpnII GATC 4 cut(s) 35, 55, 193, 217
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 250
Eco31I GGTCTC 2 cut(s) 176, 260
Eco47I GGWCC 2 cut(s) 42, 148
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 2 cut(s) 230, 265
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 162
Hin1II CATG 1 cut(s) 34
HinfI GANTC 1 cut(s) 11
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 31, 45
Hpy99I CGWCG 2 cut(s) 128, 131
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 28
Hsp92II CATG 1 cut(s) 34
KspI CCGCGG 1 cut(s) 160
Kzo9I GATC 4 cut(s) 35, 55, 193, 217
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 5 cut(s) 25, 52, 58, 120, 191
MaeI CTAG 2 cut(s) 230, 265
MalI GATC 4 cut(s) 37, 57, 195, 219
MboI GATC 4 cut(s) 35, 55, 193, 217
MboII GAAGA 2 cut(s) 56, 214
MflI RGATCY 2 cut(s) 35, 55
MhlI GDGCHC 2 cut(s) 8, 22
MluCI AATT 1 cut(s) 77
MmeI TCCRAC 2 cut(s) 33, 109
MnlI CCTC 6 cut(s) 107, 122, 139, 185, 235, 236
MspA1I CMGCKG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 159
NdeII GATC 4 cut(s) 35, 55, 193, 217
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 21
PagI TCATGA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 183
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 42, 148
PspPPI RGGWCCY 1 cut(s) 148
PsuI RGATCY 2 cut(s) 35, 55
RsaI GTAC 2 cut(s) 120, 261
RsaNI GTAC 2 cut(s) 119, 260
SacII CCGCGG 1 cut(s) 160
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 4 cut(s) 35, 55, 193, 217
Sau96I GGNCC 2 cut(s) 42, 148
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 2 cut(s) 8, 22
SetI ASST 4 cut(s) 44, 153, 183, 237
Sfr303I CCGCGG 1 cut(s) 160
SgrBI CCGCGG 1 cut(s) 160
SinI GGWCC 2 cut(s) 42, 148
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 77
SsiI CCGC 2 cut(s) 157, 159
SspMI CTAG 2 cut(s) 230, 265
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 177, 240
TasI AATT 1 cut(s) 77
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 42, 148
XspI CTAG 2 cut(s) 230, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.