Rmu_sc0001214.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001214.1
OG0018256
Physical Location & Seq
Forward (+)
76154 .. 76975
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001214.1_g000026.1.cds

Sequence Viewer

Length: 372 bp
atgatctatgtcaaaaaccgaacattcgacgccggtttggtggccggagacggccgaaatcgccggaaaaatctacaaaactcccaaactgctacagtgaacttcacggctcaaatccgagctctaccggttgagccaccgcaaaataccaccacaggcatgacaagaaggaggagacgagcttgccggttcccggattccatcgtggggtggccggaggaggaagaaatcggaaggagaagaaatcgggccgaagaggagaaagaatcgggggagaagagagagaaaagctgggataatgagtcccttcttgcttacgaagttcggggacttataggggctaggcgcctctcggacattacttctgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.11

Weight (kDa)

10.09

Isoelectric Point (pI)

85.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 345
AciI CCGC 1 cut(s) 140
AcoI YGGCCR 3 cut(s) 42, 52, 212
AcyI GRCGYC 2 cut(s) 30, 346
AfiI CCNNNNNNNGG 2 cut(s) 193, 207
AgeI ACCGGT 1 cut(s) 127
AluBI AGCT 3 cut(s) 122, 182, 291
AluI AGCT 3 cut(s) 122, 182, 291
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 42, 169
AoxI GGCC 4 cut(s) 42, 52, 212, 249
AsiGI ACCGGT 1 cut(s) 127
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 194
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BccI CCATC 1 cut(s) 209
BceAI ACGGC 2 cut(s) 67, 123
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 42, 169
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 191, 347
BmrFI CCNGG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 194
BsaHI GRCGYC 2 cut(s) 30, 346
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 207
Bse118I RCCGGY 3 cut(s) 32, 127, 186
BseLI CCNNNNNNNGG 2 cut(s) 193, 207
BseRI GAGGAG 3 cut(s) 187, 233, 272
BseX3I CGGCCG 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 4 cut(s) 44, 54, 214, 251
BshNI GGYRCC 1 cut(s) 345
BshTI ACCGGT 1 cut(s) 127
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 7 cut(s) 33, 45, 64, 128, 187, 194, 215
BslFI GGGAC 2 cut(s) 289, 342
BslI CCNNNNNNNGG 2 cut(s) 193, 207
BsmAI GTCTC 2 cut(s) 42, 169
BsmBI CGTCTC 2 cut(s) 42, 169
BsmFI GGGAC 2 cut(s) 289, 342
BsnI GGCC 4 cut(s) 44, 54, 214, 251
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 140
BspANI GGCC 4 cut(s) 44, 54, 214, 251
BspLI GGNNCC 2 cut(s) 191, 347
BspT107I GGYRCC 1 cut(s) 345
BsrFI RCCGGY 3 cut(s) 32, 127, 186
BssAI RCCGGY 3 cut(s) 32, 127, 186
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 2 cut(s) 30, 346
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 2 cut(s) 249, 272
BstACI GRCGYC 2 cut(s) 30, 346
BstC8I GCNNGC 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 42, 169
BstMBI GATC 1 cut(s) 3
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 93
BstZI CGGCCG 1 cut(s) 52
BsuRI GGCC 4 cut(s) 44, 54, 214, 251
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 184
CfoI GCGC 1 cut(s) 348
Cfr10I RCCGGY 3 cut(s) 32, 127, 186
Cfr13I GGNCC 1 cut(s) 249
CseI GACGC 1 cut(s) 38
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 2 cut(s) 160, 369
DinI GGCGCC 1 cut(s) 347
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 3 cut(s) 42, 52, 212
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 2 cut(s) 249, 272
EarI CTCTTC 2 cut(s) 249, 272
Ecl136II GAGCTC 1 cut(s) 122
EclXI CGGCCG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 124
Eco52I CGGCCG 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 124
EgeI GGCGCC 1 cut(s) 347
EheI GGCGCC 1 cut(s) 347
Esp3I CGTCTC 2 cut(s) 42, 169
FaeI CATG 2 cut(s) 163, 372
FaiI YATR 4 cut(s) 9, 161, 335, 370
FaqI GGGAC 2 cut(s) 289, 342
FatI CATG 2 cut(s) 159, 368
FriOI GRGCYC 1 cut(s) 124
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 347
GsaI CCCAGC 1 cut(s) 295
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 4 cut(s) 44, 54, 214, 251
HapII CCGG 7 cut(s) 33, 45, 64, 128, 187, 194, 215
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 348
Hin1I GRCGYC 2 cut(s) 30, 346
Hin1II CATG 2 cut(s) 163, 372
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 3 cut(s) 197, 266, 302
HpaII CCGG 7 cut(s) 33, 45, 64, 128, 187, 194, 215
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 119, 233, 355
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 162, 228, 317
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
Hsp92I GRCGYC 2 cut(s) 30, 346
Hsp92II CATG 2 cut(s) 163, 372
HspAI GCGC 1 cut(s) 346
KasI GGCGCC 1 cut(s) 345
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 9 cut(s) 46, 58, 77, 141, 141, 200, 207, 228, 277
MaeI CTAG 1 cut(s) 342
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 236, 252, 266, 289
MhlI GDGCHC 1 cut(s) 124
Mly113I GGCGCC 1 cut(s) 346
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 5 cut(s) 165, 211, 214, 250, 359
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 7 cut(s) 33, 45, 64, 128, 187, 194, 215
MspR9I CCNGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 60
NarI GGCGCC 1 cut(s) 346
NciI CCSGG 1 cut(s) 194
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 163, 372
NlaIV GGNNCC 2 cut(s) 191, 347
PfeI GAWTC 2 cut(s) 197, 266
PfoI TCCNGGA 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 127
PleI GAGTC 1 cut(s) 310
PluTI GGCGCC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 124
PspFI CCCAGC 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 191, 347
PspPI GGNCC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 124
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 124
SetI ASST 3 cut(s) 124, 184, 293
SfcI CTRYAG 1 cut(s) 93
SfoI GGCGCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 158
SsiI CCGC 1 cut(s) 140
SspDI GGCGCC 1 cut(s) 345
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 27
TfiI GAWTC 2 cut(s) 197, 266
TscAI CASTG 1 cut(s) 102
TspRI CASTG 1 cut(s) 102
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.