divergent subfamily of APPLE domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55590 |
| fragaria_vesca | FvH4_3g41370 |
| malus_domestica | MD11G1047600.v1.1 |
| prunus_persica | Prupe.6G036600_v2.0.a1 Prupe.6G036600_v2.0.a1 |
| pyrus_communis | pycom11g03870 |
| rosa_chinensis | RchiOBHm_Chr5g0074291 |
| rosa_laevigata | RLG00000036464 |
| rosa_multiflora | Rmu_sc0000573.1_g000051 |
| rosa_roxburghii | Rroxscaffold_1G00007190 |
| rosa_rugosa | Rorug05G0429800 Rorug05G0429800 Rorug05G0429800 Rorug05G0429900 Rorug05G0429900 Rorug05G0429900 Rorug05G0430000 |
| rosa_samantha | Rh5AG487700 Rh5BG507900 Rh5CG531500 Rh5DG520800 Rh5DG521300 |
| rosa_wichuraiana | Rw5G045260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1124 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 937, 1525, 3690 |
| Acc36I | ACCTGC | 1 cut(s) | 3973 |
| Acc65I | GGTACC | 1 cut(s) | 2514 |
| AccB1I | GGYRCC | 2 cut(s) | 2514, 2654 |
| AccBSI | CCGCTC | 5 cut(s) | 7, 1909, 2298, 2742, 2750 |
| AccI | GTMKAC | 2 cut(s) | 378, 859 |
| AccII | CGCG | 1 cut(s) | 2247 |
| AccIII | TCCGGA | 2 cut(s) | 1973, 2332 |
| AclWI | GGATC | 4 cut(s) | 753, 1566, 2489, 3705 |
| AcoI | YGGCCR | 3 cut(s) | 1470, 1890, 2911 |
| AcsI | RAATTY | 7 cut(s) | 1009, 1019, 2372, 2722, 3105, 3359, 4169 |
| AcuI | CTGAAG | 3 cut(s) | 414, 1658, 2015 |
| AcyI | GRCGYC | 1 cut(s) | 2574 |
| AfaI | GTAC | 8 cut(s) | 923, 1477, 1841, 1856, 2291, 2399, 2516, 2543 |
| AfeI | AGCGCT | 2 cut(s) | 82, 668 |
| AflIII | ACRYGT | 1 cut(s) | 2538 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 244 |
| AhlI | ACTAGT | 1 cut(s) | 578 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1867, 1899, 1969, 2001, 2153, 2185 |
| AleI | CACNNNNGTG | 1 cut(s) | 1324 |
| Alw21I | GWGCWC | 3 cut(s) | 119, 271, 3162 |
| Alw44I | GTGCAC | 1 cut(s) | 267 |
| AlwI | GGATC | 4 cut(s) | 753, 1566, 2489, 3705 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1265, 2942, 3962 |
| Ama87I | CYCGRG | 3 cut(s) | 3061, 3561, 4122 |
| Aor13HI | TCCGGA | 2 cut(s) | 1973, 2332 |
| Aor51HI | AGCGCT | 2 cut(s) | 82, 668 |
| ApaI | GGGCCC | 1 cut(s) | 2559 |
| ApaLI | GTGCAC | 1 cut(s) | 267 |
| ApeKI | GCWGC | 7 cut(s) | 66, 297, 544, 664, 2731, 3224, 4051 |
| ApoI | RAATTY | 7 cut(s) | 1009, 1019, 2372, 2722, 3105, 3359, 4169 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1043, 1075, 1738, 1770 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1019, 1954, 1981, 3105 |
| Asp718I | GGTACC | 1 cut(s) | 2514 |
| AspA2I | CCTAGG | 1 cut(s) | 3880 |
| AspLEI | GCGC | 3 cut(s) | 83, 234, 669 |
| AsuC2I | CCSGG | 4 cut(s) | 1656, 2255, 4123, 4124 |
| AsuII | TTCGAA | 2 cut(s) | 1023, 3109 |
| AsuNHI | GCTAGC | 1 cut(s) | 2348 |
| AvaI | CYCGRG | 3 cut(s) | 3061, 3561, 4122 |
| AvaII | GGWCC | 8 cut(s) | 29, 1162, 2056, 2527, 3092, 3613, 3652, 4186 |
| AvrII | CCTAGG | 1 cut(s) | 3880 |
| AxyI | CCTNAGG | 1 cut(s) | 3074 |
| BaeGI | GKGCMC | 2 cut(s) | 271, 2559 |
| BalI | TGGCCA | 1 cut(s) | 1892 |
| BanI | GGYRCC | 2 cut(s) | 2514, 2654 |
| BanII | GRGCYC | 2 cut(s) | 2332, 2559 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1350, 1382, 3146, 3178 |
| BauI | CACGAG | 2 cut(s) | 2188, 2809 |
| BbsI | GAAGAC | 1 cut(s) | 567 |
| Bbv12I | GWGCWC | 3 cut(s) | 119, 271, 3162 |
| BbvI | GCAGC | 7 cut(s) | 53, 284, 556, 676, 2718, 3236, 4063 |
| BceAI | ACGGC | 4 cut(s) | 1297, 2453, 2486, 2993 |
| BciVI | GTATCC | 1 cut(s) | 1934 |
| BclI | TGATCA | 2 cut(s) | 75, 4195 |
| BcnI | CCSGG | 4 cut(s) | 1656, 2255, 4123, 4124 |
| BcuI | ACTAGT | 1 cut(s) | 578 |
| BfmI | CTRYAG | 2 cut(s) | 1189, 3219 |
| BfoI | RGCGCY | 2 cut(s) | 84, 670 |
| BfuAI | ACCTGC | 1 cut(s) | 3973 |
| BfuI | GTATCC | 1 cut(s) | 1934 |
| BlnI | CCTAGG | 1 cut(s) | 3880 |
| BmcAI | AGTACT | 1 cut(s) | 923 |
| Bme18I | GGWCC | 8 cut(s) | 29, 1162, 2056, 2527, 3092, 3613, 3652, 4186 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 244 |
| BmeT110I | CYCGRG | 3 cut(s) | 3061, 3561, 4122 |
| BmrI | ACTGGG | 1 cut(s) | 3269 |
| BmsI | GCATC | 8 cut(s) | 543, 580, 995, 1235, 2572, 3424, 3438, 3965 |
| BmtI | GCTAGC | 1 cut(s) | 2352 |
| BmuI | ACTGGG | 1 cut(s) | 3269 |
| BpiI | GAAGAC | 1 cut(s) | 567 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3149, 3181 |
| BpmI | CTGGAG | 4 cut(s) | 946, 1187, 2521, 2705 |
| Bpu14I | TTCGAA | 2 cut(s) | 1023, 3109 |
| BpuEI | CTTGAG | 7 cut(s) | 144, 575, 1816, 2665, 3130, 3602, 4099 |
| BpuMI | CCSGG | 4 cut(s) | 1656, 2255, 4123, 4124 |
| BsaAI | YACGTR | 1 cut(s) | 2541 |
| BsaHI | GRCGYC | 1 cut(s) | 2574 |
| BsaI | GGTCTC | 2 cut(s) | 47, 3776 |
| BsaJI | CCNNGG | 9 cut(s) | 1654, 1739, 1819, 2245, 2303, 2522, 2523, 3880, 4122 |
| BsaWI | WCCGGW | 6 cut(s) | 1555, 1973, 2165, 2292, 2332, 4148 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2672, 2702, 2739, 2769, 2842, 2872 |
| Bse118I | RCCGGY | 6 cut(s) | 547, 1472, 1787, 2590, 2900, 4188 |
| Bse1I | ACTGG | 7 cut(s) | 108, 1152, 1670, 1926, 2221, 2506, 3264 |
| Bse21I | CCTNAGG | 1 cut(s) | 3074 |
| Bse3DI | GCAATG | 6 cut(s) | 147, 659, 773, 1221, 3187, 3768 |
| BseAI | TCCGGA | 2 cut(s) | 1973, 2332 |
| BseDI | CCNNGG | 9 cut(s) | 1654, 1739, 1819, 2245, 2303, 2522, 2523, 3880, 4122 |
| BseMI | GCAATG | 6 cut(s) | 147, 659, 773, 1221, 3187, 3768 |
| BseMII | CTCAG | 8 cut(s) | 165, 367, 1479, 1513, 1729, 1935, 3065, 3954 |
| BseNI | ACTGG | 7 cut(s) | 108, 1152, 1670, 1926, 2221, 2506, 3264 |
| BseSI | GKGCMC | 2 cut(s) | 271, 2559 |
| BseXI | GCAGC | 7 cut(s) | 53, 284, 556, 676, 2718, 3236, 4063 |
| BseYI | CCCAGC | 1 cut(s) | 62 |
| BsgI | GTGCAG | 3 cut(s) | 910, 1646, 4032 |
| Bsh1236I | CGCG | 1 cut(s) | 2247 |
| BshNI | GGYRCC | 2 cut(s) | 2514, 2654 |
| BsiHKAI | GWGCWC | 3 cut(s) | 119, 271, 3162 |
| BsiHKCI | CYCGRG | 3 cut(s) | 3061, 3561, 4122 |
| BslFI | GGGAC | 4 cut(s) | 1513, 2540, 3276, 3626 |
| BsmBI | CGTCTC | 1 cut(s) | 1786 |
| BsmFI | GGGAC | 4 cut(s) | 1513, 2540, 3276, 3626 |
| BsmI | GAATGC | 2 cut(s) | 426, 653 |
| Bso31I | GGTCTC | 2 cut(s) | 47, 3776 |
| BsoBI | CYCGRG | 3 cut(s) | 3061, 3561, 4122 |
| Bsp119I | TTCGAA | 2 cut(s) | 1023, 3109 |
| Bsp120I | GGGCCC | 1 cut(s) | 2555 |
| Bsp1286I | GDGCHC | 5 cut(s) | 119, 271, 2332, 2559, 3162 |
| Bsp13I | TCCGGA | 2 cut(s) | 1973, 2332 |
| Bsp19I | CCATGG | 1 cut(s) | 1739 |
| BspCNI | CTCAG | 8 cut(s) | 164, 366, 1480, 1512, 1728, 1934, 3066, 3955 |
| BspEI | TCCGGA | 2 cut(s) | 1973, 2332 |
| BspFNI | CGCG | 1 cut(s) | 2247 |
| BspMI | ACCTGC | 1 cut(s) | 3973 |
| BspOI | GCTAGC | 1 cut(s) | 2352 |
| BspPI | GGATC | 4 cut(s) | 753, 1566, 2489, 3705 |
| BspT104I | TTCGAA | 2 cut(s) | 1023, 3109 |
| BspT107I | GGYRCC | 2 cut(s) | 2514, 2654 |
| BspTNI | GGTCTC | 2 cut(s) | 47, 3776 |
| BsrBI | CCGCTC | 5 cut(s) | 7, 1909, 2298, 2742, 2750 |
| BsrDI | GCAATG | 6 cut(s) | 147, 659, 773, 1221, 3187, 3768 |
| BsrFI | RCCGGY | 6 cut(s) | 547, 1472, 1787, 2590, 2900, 4188 |
| BsrI | ACTGG | 7 cut(s) | 108, 1152, 1670, 1926, 2221, 2506, 3264 |
| BssAI | RCCGGY | 6 cut(s) | 547, 1472, 1787, 2590, 2900, 4188 |
| BssECI | CCNNGG | 9 cut(s) | 1654, 1739, 1819, 2245, 2303, 2522, 2523, 3880, 4122 |
| BssNI | GRCGYC | 1 cut(s) | 2574 |
| BssSI | CACGAG | 2 cut(s) | 2188, 2809 |
| BssT1I | CCWWGG | 2 cut(s) | 1739, 3880 |
| Bst2BI | CACGAG | 2 cut(s) | 2188, 2809 |
| Bst4CI | ACNGT | 7 cut(s) | 1138, 1340, 1407, 1879, 2280, 3134, 4183 |
| Bst6I | CTCTTC | 3 cut(s) | 1634, 3317, 3779 |
| BstACI | GRCGYC | 1 cut(s) | 2574 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 550, 983 |
| BstBAI | YACGTR | 1 cut(s) | 2541 |
| BstBI | TTCGAA | 2 cut(s) | 1023, 3109 |
| BstDSI | CCRYGG | 2 cut(s) | 1739, 2245 |
| BstEII | GGTNACC | 1 cut(s) | 4151 |
| BstFNI | CGCG | 1 cut(s) | 2247 |
| BstH2I | RGCGCY | 2 cut(s) | 84, 670 |
| BstHHI | GCGC | 3 cut(s) | 83, 234, 669 |
| BstNSI | RCATGY | 2 cut(s) | 907, 3982 |
| BstPI | GGTNACC | 1 cut(s) | 4151 |
| BstSFI | CTRYAG | 2 cut(s) | 1189, 3219 |
| BstSLI | GKGCMC | 2 cut(s) | 271, 2559 |
| BstUI | CGCG | 1 cut(s) | 2247 |
| BstV1I | GCAGC | 7 cut(s) | 53, 284, 556, 676, 2718, 3236, 4063 |
| BstV2I | GAAGAC | 1 cut(s) | 567 |
| BstX2I | RGATCY | 1 cut(s) | 745 |
| BstYI | RGATCY | 1 cut(s) | 745 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3074 |
| BsuI | GTATCC | 1 cut(s) | 1934 |
| BtgI | CCRYGG | 2 cut(s) | 1739, 2245 |
| BtgZI | GCGATG | 1 cut(s) | 1212 |
| BtsIMutI | CAGTG | 6 cut(s) | 1403, 1663, 1723, 2513, 3139, 4179 |
| BveI | ACCTGC | 1 cut(s) | 3973 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1265, 2942, 3962 |
| CfoI | GCGC | 3 cut(s) | 83, 234, 669 |
| Cfr10I | RCCGGY | 6 cut(s) | 547, 1472, 1787, 2590, 2900, 4188 |
| Cfr42I | CCGCGG | 1 cut(s) | 2248 |
| Cfr9I | CCCGGG | 1 cut(s) | 4122 |
| CseI | GACGC | 4 cut(s) | 118, 983, 2582, 3988 |
| Csp6I | GTAC | 8 cut(s) | 922, 1476, 1840, 1855, 2290, 2398, 2515, 2542 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1449, 1484 |
| CviQI | GTAC | 8 cut(s) | 922, 1476, 1840, 1855, 2290, 2398, 2515, 2542 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 937, 1525, 3690 |
| DriI | GACNNNNNGTC | 1 cut(s) | 244 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 937, 1525, 3690 |
| EaeI | YGGCCR | 3 cut(s) | 1470, 1890, 2911 |
| Eam1104I | CTCTTC | 3 cut(s) | 1634, 3317, 3779 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 244 |
| EarI | CTCTTC | 3 cut(s) | 1634, 3317, 3779 |
| EciI | GGCGGA | 1 cut(s) | 2760 |
| Eco130I | CCWWGG | 2 cut(s) | 1739, 3880 |
| Eco147I | AGGCCT | 2 cut(s) | 1645, 4024 |
| Eco24I | GRGCYC | 2 cut(s) | 2332, 2559 |
| Eco31I | GGTCTC | 2 cut(s) | 47, 3776 |
| Eco32I | GATATC | 1 cut(s) | 3663 |
| Eco47I | GGWCC | 8 cut(s) | 29, 1162, 2056, 2527, 3092, 3613, 3652, 4186 |
| Eco47III | AGCGCT | 2 cut(s) | 82, 668 |
| Eco57I | CTGAAG | 3 cut(s) | 414, 1658, 2015 |
| Eco81I | CCTNAGG | 1 cut(s) | 3074 |
| Eco88I | CYCGRG | 3 cut(s) | 3061, 3561, 4122 |
| Eco91I | GGTNACC | 1 cut(s) | 4151 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1162, 2527, 2556, 3092, 3613 |
| EcoO65I | GGTNACC | 1 cut(s) | 4151 |
| EcoRI | GAATTC | 2 cut(s) | 3105, 3359 |
| EcoRV | GATATC | 1 cut(s) | 3663 |
| EcoT14I | CCWWGG | 2 cut(s) | 1739, 3880 |
| EcoT22I | ATGCAT | 3 cut(s) | 595, 988, 3980 |
| EcoT38I | GRGCYC | 2 cut(s) | 2332, 2559 |
| ErhI | CCWWGG | 2 cut(s) | 1739, 3880 |
| Esp3I | CGTCTC | 1 cut(s) | 1786 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3081, 3113 |
| FaqI | GGGAC | 4 cut(s) | 1513, 2540, 3276, 3626 |
| FauI | CCCGC | 2 cut(s) | 2318, 2546 |
| FauNDI | CATATG | 2 cut(s) | 1850, 3736 |
| FbaI | TGATCA | 2 cut(s) | 75, 4195 |
| FblI | GTMKAC | 2 cut(s) | 378, 859 |
| FriOI | GRGCYC | 2 cut(s) | 2332, 2559 |
| GlaI | GCGC | 3 cut(s) | 82, 233, 668 |
| GsaI | CCCAGC | 1 cut(s) | 66 |
| GsuI | CTGGAG | 4 cut(s) | 946, 1187, 2521, 2705 |
| HaeII | RGCGCY | 2 cut(s) | 84, 670 |
| HgaI | GACGC | 4 cut(s) | 118, 983, 2582, 3988 |
| HhaI | GCGC | 3 cut(s) | 83, 234, 669 |
| Hin1I | GRCGYC | 1 cut(s) | 2574 |
| Hin6I | GCGC | 3 cut(s) | 81, 232, 667 |
| HinP1I | GCGC | 3 cut(s) | 81, 232, 667 |
| HincII | GTYRAC | 1 cut(s) | 1066 |
| HindII | GTYRAC | 1 cut(s) | 1066 |
| HindIII | AAGCTT | 1 cut(s) | 396 |
| Hpy166II | GTNNAC | 9 cut(s) | 269, 379, 860, 1066, 1574, 2383, 2669, 3286, 4186 |
| Hpy8I | GTNNAC | 9 cut(s) | 269, 379, 860, 1066, 1574, 2383, 2669, 3286, 4186 |
| Hpy99I | CGWCG | 3 cut(s) | 250, 1949, 2576 |
| HpyCH4III | ACNGT | 7 cut(s) | 1138, 1340, 1407, 1879, 2280, 3134, 4183 |
| HpyCH4IV | ACGT | 3 cut(s) | 564, 2540, 2671 |
| HpySE526I | ACGT | 3 cut(s) | 564, 2540, 2671 |
| Hsp92I | GRCGYC | 1 cut(s) | 2574 |
| HspAI | GCGC | 3 cut(s) | 81, 232, 667 |
| KflI | GGGWCCC | 1 cut(s) | 2527 |
| Kpn2I | TCCGGA | 2 cut(s) | 1973, 2332 |
| KpnI | GGTACC | 1 cut(s) | 2518 |
| KroI | GCCGGC | 2 cut(s) | 1787, 2900 |
| KroNI | GCCGGC | 2 cut(s) | 1789, 2902 |
| Ksp22I | TGATCA | 2 cut(s) | 75, 4195 |
| KspI | CCGCGG | 1 cut(s) | 2248 |
| Lsp1109I | GCAGC | 7 cut(s) | 53, 284, 556, 676, 2718, 3236, 4063 |
| LweI | GCATC | 8 cut(s) | 543, 580, 995, 1235, 2572, 3424, 3438, 3965 |
| MaeII | ACGT | 3 cut(s) | 564, 2540, 2671 |
| MaeIII | GTNAC | 5 cut(s) | 725, 971, 1348, 1727, 4151 |
| MbiI | CCGCTC | 5 cut(s) | 7, 1909, 2298, 2742, 2750 |
| MfeI | CAATTG | 4 cut(s) | 223, 1392, 1461, 1600 |
| MflI | RGATCY | 1 cut(s) | 745 |
| MhlI | GDGCHC | 5 cut(s) | 119, 271, 2332, 2559, 3162 |
| MlsI | TGGCCA | 1 cut(s) | 1892 |
| MluNI | TGGCCA | 1 cut(s) | 1892 |
| MlyI | GAGTC | 7 cut(s) | 236, 455, 820, 925, 947, 1199, 1616 |
| MmeI | TCCRAC | 4 cut(s) | 2491, 2641, 3768, 3900 |
| Mox20I | TGGCCA | 1 cut(s) | 1892 |
| Mph1103I | ATGCAT | 3 cut(s) | 595, 988, 3980 |
| MroI | TCCGGA | 2 cut(s) | 1973, 2332 |
| MroNI | GCCGGC | 2 cut(s) | 1787, 2900 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1019, 1954, 1981, 3105 |
| MscI | TGGCCA | 1 cut(s) | 1892 |
| MseI | TTAA | 8 cut(s) | 207, 402, 426, 791, 882, 1241, 2016, 3380 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1324, 2978 |
| Msp20I | TGGCCA | 1 cut(s) | 1892 |
| MspA1I | CMGCKG | 5 cut(s) | 66, 2247, 2910, 3023, 3227 |
| MunI | CAATTG | 4 cut(s) | 223, 1392, 1461, 1600 |
| Mva1269I | GAATGC | 2 cut(s) | 426, 653 |
| MvnI | CGCG | 1 cut(s) | 2247 |
| NaeI | GCCGGC | 2 cut(s) | 1789, 2902 |
| NciI | CCSGG | 4 cut(s) | 1656, 2255, 4123, 4124 |
| NcoI | CCATGG | 1 cut(s) | 1739 |
| NdeI | CATATG | 2 cut(s) | 1850, 3736 |
| NgoMIV | GCCGGC | 2 cut(s) | 1787, 2900 |
| NheI | GCTAGC | 1 cut(s) | 2348 |
| NmuCI | GTSAC | 4 cut(s) | 725, 971, 1348, 4151 |
| NsiI | ATGCAT | 3 cut(s) | 595, 988, 3980 |
| NspI | RCATGY | 2 cut(s) | 907, 3982 |
| NspV | TTCGAA | 2 cut(s) | 1023, 3109 |
| OliI | CACNNNNGTG | 1 cut(s) | 1324 |
| PaeI | GCATGC | 1 cut(s) | 3982 |
| PaeR7I | CTCGAG | 1 cut(s) | 3561 |
| PasI | CCCWGGG | 1 cut(s) | 2523 |
| PceI | AGGCCT | 2 cut(s) | 1645, 4024 |
| PctI | GAATGC | 2 cut(s) | 426, 653 |
| PdiI | GCCGGC | 2 cut(s) | 1789, 2902 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1019, 1954, 1981, 3105 |
| PfoI | TCCNGGA | 2 cut(s) | 1164, 2253 |
| PleI | GAGTC | 7 cut(s) | 236, 454, 819, 925, 946, 1199, 1616 |
| PpsI | GAGTC | 7 cut(s) | 236, 454, 819, 925, 946, 1199, 1616 |
| Ppu21I | YACGTR | 1 cut(s) | 2541 |
| PpuMI | RGGWCCY | 4 cut(s) | 1162, 2527, 3092, 3613 |
| PsiI | TTATAA | 1 cut(s) | 1124 |
| Psp5II | RGGWCCY | 4 cut(s) | 1162, 2527, 3092, 3613 |
| PspEI | GGTNACC | 1 cut(s) | 4151 |
| PspFI | CCCAGC | 1 cut(s) | 62 |
| PspOMI | GGGCCC | 1 cut(s) | 2555 |
| PspPPI | RGGWCCY | 4 cut(s) | 1162, 2527, 3092, 3613 |
| PspXI | VCTCGAGB | 1 cut(s) | 3561 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1265, 2942, 3962 |
| PsuI | RGATCY | 1 cut(s) | 745 |
| PvuII | CAGCTG | 2 cut(s) | 66, 3023 |
| RsaI | GTAC | 8 cut(s) | 923, 1477, 1841, 1856, 2291, 2399, 2516, 2543 |
| RsaNI | GTAC | 8 cut(s) | 922, 1476, 1840, 1855, 2290, 2398, 2515, 2542 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1324, 2978 |
| SacII | CCGCGG | 1 cut(s) | 2248 |
| SaqAI | TTAA | 8 cut(s) | 207, 402, 426, 791, 882, 1241, 2016, 3380 |
| ScaI | AGTACT | 1 cut(s) | 923 |
| SchI | GAGTC | 7 cut(s) | 236, 455, 820, 925, 947, 1199, 1616 |
| SduI | GDGCHC | 5 cut(s) | 119, 271, 2332, 2559, 3162 |
| SfaNI | GCATC | 8 cut(s) | 543, 580, 995, 1235, 2572, 3424, 3438, 3965 |
| SfcI | CTRYAG | 2 cut(s) | 1189, 3219 |
| Sfr274I | CTCGAG | 1 cut(s) | 3561 |
| Sfr303I | CCGCGG | 1 cut(s) | 2248 |
| SfuI | TTCGAA | 2 cut(s) | 1023, 3109 |
| SgrBI | CCGCGG | 1 cut(s) | 2248 |
| SinI | GGWCC | 8 cut(s) | 29, 1162, 2056, 2527, 3092, 3613, 3652, 4186 |
| SlaI | CTCGAG | 1 cut(s) | 3561 |
| SmaI | CCCGGG | 1 cut(s) | 4124 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1324, 2978 |
| SmlI | CTYRAG | 8 cut(s) | 159, 554, 1831, 2644, 3145, 3561, 3617, 4078 |
| SmoI | CTYRAG | 8 cut(s) | 159, 554, 1831, 2644, 3145, 3561, 3617, 4078 |
| SpeI | ACTAGT | 1 cut(s) | 578 |
| SphI | GCATGC | 1 cut(s) | 3982 |
| SseBI | AGGCCT | 2 cut(s) | 1645, 4024 |
| StuI | AGGCCT | 2 cut(s) | 1645, 4024 |
| StyI | CCWWGG | 2 cut(s) | 1739, 3880 |
| TaaI | ACNGT | 7 cut(s) | 1138, 1340, 1407, 1879, 2280, 3134, 4183 |
| TaiI | ACGT | 3 cut(s) | 567, 2543, 2674 |
| TaqII | GACCGA | 1 cut(s) | 3680 |
| TatI | WGTACW | 2 cut(s) | 921, 2397 |
| TauI | GCSGC | 6 cut(s) | 10, 2301, 2493, 2745, 2913, 3230 |
| Tru1I | TTAA | 8 cut(s) | 207, 402, 426, 791, 882, 1241, 2016, 3380 |
| Tru9I | TTAA | 8 cut(s) | 207, 402, 426, 791, 882, 1241, 2016, 3380 |
| TscAI | CASTG | 6 cut(s) | 1410, 1670, 1723, 2513, 3139, 4186 |
| TseFI | GTSAC | 4 cut(s) | 725, 971, 1348, 4151 |
| TseI | GCWGC | 7 cut(s) | 66, 297, 544, 664, 2731, 3224, 4051 |
| Tsp45I | GTSAC | 4 cut(s) | 725, 971, 1348, 4151 |
| TspGWI | ACGGA | 4 cut(s) | 184, 1962, 2693, 3248 |
| TspMI | CCCGGG | 1 cut(s) | 4122 |
| TspRI | CASTG | 6 cut(s) | 1410, 1670, 1723, 2513, 3139, 4186 |
| VneI | GTGCAC | 1 cut(s) | 267 |
| VpaK11BI | GGWCC | 8 cut(s) | 29, 1162, 2056, 2527, 3092, 3613, 3652, 4186 |
| XapI | RAATTY | 7 cut(s) | 1009, 1019, 2372, 2722, 3105, 3359, 4169 |
| XbaI | TCTAGA | 1 cut(s) | 934 |
| XceI | RCATGY | 2 cut(s) | 907, 3982 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 100 |
| XhoI | CTCGAG | 1 cut(s) | 3561 |
| XmaI | CCCGGG | 1 cut(s) | 4122 |
| XmaJI | CCTAGG | 1 cut(s) | 3880 |
| XmiI | GTMKAC | 2 cut(s) | 378, 859 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1019, 1954, 1981, 3105 |
| ZrmI | AGTACT | 1 cut(s) | 923 |
| Zsp2I | ATGCAT | 3 cut(s) | 595, 988, 3980 |