divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G65790 AT1G65790 AT1G65790 AT1G65800 AT1G65800 AT4G21380 AT4G21380 AT5G39370 |
| fragaria_vesca | FvH4_3g03430 |
| malus_domestica | MD02G1167300.v1.1 MD03G1187400.v1.1 |
| prunus_persica | Prupe.4G032300_v2.0.a1 Prupe.4G237700_v2.0.a1 Prupe.4G251300_v2.0.a1 |
| pyrus_communis | pycom03g14020 |
| rosa_chinensis | RchiOBHm_Chr5g0005211 RchiOBHm_Chr5g0074281 |
| rosa_laevigata | RLG00000031300 RLG00000036463 |
| rosa_multiflora | Rmu_co7992028.1_g000001 Rmu_sc0004706.1_g000005 Rmu_sc0014528.1_g000001 Rmu_sc0028767.1_g000001 Rmu_sc0028768.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00007200 Rroxscaffold_1G00070460 |
| rosa_rugosa | Rorug04G0416100 Rorug05G0429800 |
| rosa_samantha | Rh5AG487600 Rh5CG048800 Rh5CG531400 Rh5DG521200 |
| rosa_wichuraiana | Rw5G045250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 13, 105, 389 |
| AcuI | CTGAAG | 1 cut(s) | 468 |
| AfaI | GTAC | 2 cut(s) | 134, 345 |
| AgsI | TTSAA | 2 cut(s) | 203, 394 |
| AjnI | CCWGG | 1 cut(s) | 268 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 318, 350 |
| AluBI | AGCT | 3 cut(s) | 65, 101, 386 |
| AluI | AGCT | 3 cut(s) | 65, 101, 386 |
| ApeKI | GCWGC | 3 cut(s) | 59, 62, 233 |
| ApoI | RAATTY | 3 cut(s) | 13, 105, 389 |
| AsuHPI | GGTGA | 3 cut(s) | 350, 446, 457 |
| BbsI | GAAGAC | 1 cut(s) | 210 |
| BbvI | GCAGC | 3 cut(s) | 71, 74, 220 |
| BccI | CCATC | 2 cut(s) | 407, 425 |
| BciT130I | CCWGG | 1 cut(s) | 270 |
| BfaI | CTAG | 1 cut(s) | 102 |
| BisI | GCNGC | 3 cut(s) | 60, 63, 234 |
| BlsI | GCNGC | 3 cut(s) | 61, 64, 235 |
| BmcAI | AGTACT | 1 cut(s) | 134 |
| Bme1390I | CCNGG | 1 cut(s) | 270 |
| BmrFI | CCNGG | 1 cut(s) | 270 |
| BmsI | GCATC | 1 cut(s) | 213 |
| BpiI | GAAGAC | 1 cut(s) | 210 |
| BpmI | CTGGAG | 1 cut(s) | 102 |
| Bsa29I | ATCGAT | 1 cut(s) | 429 |
| BsaBI | GATNNNNATC | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 2 cut(s) | 22, 269 |
| Bse118I | RCCGGY | 1 cut(s) | 310 |
| Bse1I | ACTGG | 1 cut(s) | 85 |
| Bse8I | GATNNNNATC | 1 cut(s) | 52 |
| BseBI | CCWGG | 1 cut(s) | 270 |
| BseCI | ATCGAT | 1 cut(s) | 429 |
| BseDI | CCNNGG | 2 cut(s) | 22, 269 |
| BseGI | GGATG | 2 cut(s) | 228, 418 |
| BseJI | GATNNNNATC | 1 cut(s) | 52 |
| BseMII | CTCAG | 2 cut(s) | 32, 168 |
| BseNI | ACTGG | 1 cut(s) | 85 |
| BseXI | GCAGC | 3 cut(s) | 71, 74, 220 |
| BsgI | GTGCAG | 1 cut(s) | 219 |
| BshVI | ATCGAT | 1 cut(s) | 429 |
| BsiSI | CCGG | 1 cut(s) | 311 |
| Bsp143I | GATC | 2 cut(s) | 249, 447 |
| BspCNI | CTCAG | 2 cut(s) | 33, 169 |
| BspDI | ATCGAT | 1 cut(s) | 429 |
| BspHI | TCATGA | 1 cut(s) | 148 |
| BsrFI | RCCGGY | 1 cut(s) | 310 |
| BsrI | ACTGG | 1 cut(s) | 85 |
| BssAI | RCCGGY | 1 cut(s) | 310 |
| BssECI | CCNNGG | 2 cut(s) | 22, 269 |
| BssMI | GATC | 2 cut(s) | 249, 447 |
| Bst2UI | CCWGG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 1 cut(s) | 240 |
| Bst6I | CTCTTC | 1 cut(s) | 321 |
| BstC8I | GCNNGC | 1 cut(s) | 403 |
| BstDEI | CTNAG | 4 cut(s) | 41, 127, 177, 382 |
| BstF5I | GGATG | 2 cut(s) | 228, 418 |
| BstKTI | GATC | 2 cut(s) | 252, 450 |
| BstMBI | GATC | 2 cut(s) | 249, 447 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 191 |
| BstNI | CCWGG | 1 cut(s) | 270 |
| BstNSI | RCATGY | 1 cut(s) | 405 |
| BstSCI | CCNGG | 1 cut(s) | 268 |
| BstV1I | GCAGC | 3 cut(s) | 71, 74, 220 |
| BstV2I | GAAGAC | 1 cut(s) | 210 |
| Bsu15I | ATCGAT | 1 cut(s) | 429 |
| BsuTUI | ATCGAT | 1 cut(s) | 429 |
| BtsCI | GGATG | 2 cut(s) | 228, 418 |
| BtsIMutI | CAGTG | 1 cut(s) | 236 |
| Cac8I | GCNNGC | 1 cut(s) | 403 |
| CciI | TCATGA | 1 cut(s) | 148 |
| Cfr10I | RCCGGY | 1 cut(s) | 310 |
| ClaI | ATCGAT | 1 cut(s) | 429 |
| Csp6I | GTAC | 2 cut(s) | 133, 344 |
| CviAII | CATG | 3 cut(s) | 149, 218, 402 |
| CviJI | RGCY | 5 cut(s) | 65, 101, 275, 386, 440 |
| CviKI_1 | RGCY | 5 cut(s) | 65, 101, 275, 386, 440 |
| CviQI | GTAC | 2 cut(s) | 133, 344 |
| DdeI | CTNAG | 4 cut(s) | 41, 127, 177, 382 |
| DpnI | GATC | 2 cut(s) | 251, 449 |
| DpnII | GATC | 2 cut(s) | 249, 447 |
| Eam1104I | CTCTTC | 1 cut(s) | 321 |
| EarI | CTCTTC | 1 cut(s) | 321 |
| Eco57I | CTGAAG | 1 cut(s) | 468 |
| EcoRII | CCWGG | 1 cut(s) | 268 |
| FaeI | CATG | 3 cut(s) | 152, 221, 405 |
| FatI | CATG | 3 cut(s) | 148, 217, 401 |
| Fnu4HI | GCNGC | 3 cut(s) | 60, 63, 234 |
| FokI | GGATG | 2 cut(s) | 235, 425 |
| Fsp4HI | GCNGC | 3 cut(s) | 60, 63, 234 |
| FspBI | CTAG | 1 cut(s) | 102 |
| GluI | GCNGC | 3 cut(s) | 60, 63, 234 |
| GsuI | CTGGAG | 1 cut(s) | 102 |
| HapII | CCGG | 1 cut(s) | 311 |
| Hin1II | CATG | 3 cut(s) | 152, 221, 405 |
| HinfI | GANTC | 4 cut(s) | 145, 152, 173, 179 |
| HpaII | CCGG | 1 cut(s) | 311 |
| HphI | GGTGA | 3 cut(s) | 350, 446, 457 |
| Hpy188I | TCNGA | 3 cut(s) | 12, 42, 178 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 394 |
| HpyAV | CCTTC | 2 cut(s) | 45, 465 |
| HpyCH4III | ACNGT | 1 cut(s) | 240 |
| HpyCH4V | TGCA | 3 cut(s) | 166, 236, 298 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 191 |
| HpyF3I | CTNAG | 4 cut(s) | 41, 127, 177, 382 |
| Hsp92II | CATG | 3 cut(s) | 152, 221, 405 |
| Kzo9I | GATC | 2 cut(s) | 249, 447 |
| LpnPI | CCDG | 5 cut(s) | 66, 180, 255, 282, 324 |
| Lsp1109I | GCAGC | 3 cut(s) | 71, 74, 220 |
| LweI | GCATC | 1 cut(s) | 213 |
| MaeI | CTAG | 1 cut(s) | 102 |
| MaeIII | GTNAC | 1 cut(s) | 475 |
| MalI | GATC | 2 cut(s) | 251, 449 |
| MboI | GATC | 2 cut(s) | 249, 447 |
| MboII | GAAGA | 4 cut(s) | 131, 215, 249, 338 |
| MluCI | AATT | 4 cut(s) | 13, 105, 262, 389 |
| MlyI | GAGTC | 3 cut(s) | 146, 154, 188 |
| MnlI | CCTC | 5 cut(s) | 32, 38, 171, 334, 430 |
| MseI | TTAA | 2 cut(s) | 75, 92 |
| MspI | CCGG | 1 cut(s) | 311 |
| MspR9I | CCNGG | 1 cut(s) | 270 |
| MvaI | CCWGG | 1 cut(s) | 270 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 191 |
| NdeII | GATC | 2 cut(s) | 249, 447 |
| NlaIII | CATG | 3 cut(s) | 152, 221, 405 |
| NmuCI | GTSAC | 1 cut(s) | 475 |
| NspI | RCATGY | 1 cut(s) | 405 |
| PaeI | GCATGC | 1 cut(s) | 405 |
| PagI | TCATGA | 1 cut(s) | 148 |
| PfeI | GAWTC | 1 cut(s) | 173 |
| PkrI | GCNGC | 3 cut(s) | 61, 64, 235 |
| PleI | GAGTC | 3 cut(s) | 146, 153, 187 |
| PpsI | GAGTC | 3 cut(s) | 146, 153, 187 |
| Psp6I | CCWGG | 1 cut(s) | 268 |
| PspGI | CCWGG | 1 cut(s) | 268 |
| RsaI | GTAC | 2 cut(s) | 134, 345 |
| RsaNI | GTAC | 2 cut(s) | 133, 344 |
| SaqAI | TTAA | 2 cut(s) | 75, 92 |
| SatI | GCNGC | 3 cut(s) | 60, 63, 234 |
| Sau3AI | GATC | 2 cut(s) | 249, 447 |
| ScaI | AGTACT | 1 cut(s) | 134 |
| SchI | GAGTC | 3 cut(s) | 146, 154, 188 |
| ScrFI | CCNGG | 1 cut(s) | 270 |
| SetI | ASST | 7 cut(s) | 37, 67, 103, 308, 345, 388, 457 |
| SfaNI | GCATC | 1 cut(s) | 213 |
| SphI | GCATGC | 1 cut(s) | 405 |
| Sse9I | AATT | 4 cut(s) | 13, 105, 262, 389 |
| SspMI | CTAG | 1 cut(s) | 102 |
| StyD4I | CCNGG | 1 cut(s) | 268 |
| TaaI | ACNGT | 1 cut(s) | 240 |
| TaqI | TCGA | 2 cut(s) | 187, 429 |
| TaqII | GACCGA | 1 cut(s) | 222 |
| TasI | AATT | 4 cut(s) | 13, 105, 262, 389 |
| TatI | WGTACW | 1 cut(s) | 132 |
| TfiI | GAWTC | 1 cut(s) | 173 |
| Tru1I | TTAA | 2 cut(s) | 75, 92 |
| Tru9I | TTAA | 2 cut(s) | 75, 92 |
| TscAI | CASTG | 1 cut(s) | 243 |
| TseFI | GTSAC | 1 cut(s) | 475 |
| TseI | GCWGC | 3 cut(s) | 59, 62, 233 |
| Tsp45I | GTSAC | 1 cut(s) | 475 |
| TspDTI | ATGAA | 2 cut(s) | 42, 206 |
| TspRI | CASTG | 1 cut(s) | 243 |
| XapI | RAATTY | 3 cut(s) | 13, 105, 389 |
| XceI | RCATGY | 1 cut(s) | 405 |
| XspI | CTAG | 1 cut(s) | 102 |
| ZrmI | AGTACT | 1 cut(s) | 134 |