Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028768.1

Orthogroup ID

OG0004100

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 717

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028768.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

gaactcgaataccggattggatagatacataacctcgtggaaaactccacaagacccttctactggtgattattccttcaaactcgactaccgcggtttcccggaggctttcctccggcagagacagtcggtaaagtaccggagcggcccctggaacgggttgagttttagcggggctccggagatgaacaccgctagctctaatggtattggtttcaaattcgttgtaaacaatgaggagatgtactactctttttcggaaactaatccagctctgtattcacggctgattgtatctccctccggcaacatccaacggctttcgtggatcgagagccgcaagacctggagccagtgctggtaccttcccagggacccatgcgacacgtacagggagtgcgggccctatggtgtctgcgacgccaacgatgctttgccggtgtgtaagtgcatgaagggattccgacctaagaacccttctgcatggagcttgagagatggcaccgaaggatgtgaacgtcagacggagctggagtgtgggagtaaggacaagtttatgaaggtggagaatttgaagctgccggagagcggcggagcggtggtggatatggagatgagtttggaggagtgtgaggtgaagtgtttggggaattgctcgtgtagtgggttttcgagtgcgaggattgagaaaggagggagtggatgtgtgatgtggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

238

Amino Acids

26.68

Weight (kDa)

5.77

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65790 AT1G65790 AT1G65790 AT1G65800 AT1G65800 AT4G21380 AT4G21380 AT5G39370
fragaria_vesca	FvH4_3g03430
malus_domestica	MD02G1167300.v1.1 MD03G1187400.v1.1
prunus_persica	Prupe.4G032300_v2.0.a1 Prupe.4G237700_v2.0.a1 Prupe.4G251300_v2.0.a1
pyrus_communis	pycom03g14020
rosa_chinensis	RchiOBHm_Chr5g0005211 RchiOBHm_Chr5g0074281
rosa_laevigata	RLG00000031300 RLG00000036463
rosa_multiflora	Rmu_co7992028.1_g000001 Rmu_sc0004706.1_g000005 Rmu_sc0014528.1_g000001 Rmu_sc0028767.1_g000001 Rmu_sc0028768.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007200 Rroxscaffold_1G00070460
rosa_rugosa	Rorug04G0416100 Rorug05G0429800
rosa_samantha	Rh5AG487600 Rh5CG048800 Rh5CG531400 Rh5DG521200
rosa_wichuraiana	Rw5G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	361
AccB1I	GGYRCC	2 cut(s)	361, 501
AccBSI	CCGCTC	3 cut(s)	145, 589, 597
AccII	CGCG	1 cut(s)	94
AccIII	TCCGGA	1 cut(s)	179
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	219, 569
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	4 cut(s)	138, 246, 363, 390
AfiI	CCNNNNNNNGG	5 cut(s)	63, 156, 157, 371, 588
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	80, 218, 575
AjnI	CCWGG	3 cut(s)	150, 345, 369
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	5 cut(s)	199, 273, 490, 530, 578
AluI	AGCT	5 cut(s)	199, 273, 490, 530, 578
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	2 cut(s)	146, 402
ApaI	GGGCCC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	2 cut(s)	219, 569
Asp700I	GAANNNNTTC	1 cut(s)	459
Asp718I	GGTACC	1 cut(s)	361
AspS9I	GGNCC	4 cut(s)	147, 374, 402, 403
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	78, 647
AsuNHI	GCTAGC	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	406
BanI	GGYRCC	2 cut(s)	361, 501
BanII	GRGCYC	2 cut(s)	179, 406
BauI	CACGAG	2 cut(s)	35, 656
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	1 cut(s)	492
BceAI	ACGGC	2 cut(s)	300, 333
BciT130I	CCWGG	3 cut(s)	152, 347, 371
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	196
BisI	GCNGC	4 cut(s)	146, 338, 579, 590
BlsI	GCNGC	4 cut(s)	147, 339, 580, 591
Bme1390I	CCNGG	4 cut(s)	102, 152, 347, 371
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	4 cut(s)	147, 374, 402, 403
BmiI	GGNNCC	8 cut(s)	149, 178, 351, 363, 375, 376, 404, 503
BmrFI	CCNGG	4 cut(s)	102, 152, 347, 371
BmsI	GCATC	1 cut(s)	419
BmtI	GCTAGC	1 cut(s)	199
BpmI	CTGGAG	2 cut(s)	368, 552
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	102
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	4 cut(s)	92, 150, 369, 370
BsaWI	WCCGGW	3 cut(s)	12, 139, 179
BsaXI	ACNNNNNCTCC	5 cut(s)	519, 549, 586, 616, 689
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 156, 157, 371, 588
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	68, 353
BseAI	TCCGGA	1 cut(s)	179
BseBI	CCWGG	3 cut(s)	152, 347, 371
BseDI	CCNNGG	4 cut(s)	92, 150, 369, 370
BseGI	GGATG	3 cut(s)	310, 516, 708
BseLI	CCNNNNNNNGG	5 cut(s)	63, 156, 157, 371, 588
BseNI	ACTGG	2 cut(s)	68, 353
BseRI	GAGGAG	2 cut(s)	252, 639
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	565
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	148, 404
BshNI	GGYRCC	2 cut(s)	361, 501
BsiSI	CCGG	8 cut(s)	13, 102, 116, 140, 180, 304, 438, 582
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	5 cut(s)	63, 156, 157, 371, 588
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	148, 404
Bsp120I	GGGCCC	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	179, 406
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	328
BspANI	GGCC	2 cut(s)	148, 404
BspEI	TCCGGA	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	8 cut(s)	149, 178, 351, 363, 375, 376, 404, 503
BspOI	GCTAGC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	2 cut(s)	361, 501
BsrBI	CCGCTC	3 cut(s)	145, 589, 597
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	68, 353
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	4 cut(s)	92, 150, 369, 370
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	421
BssSI	CACGAG	2 cut(s)	35, 656
Bst2BI	CACGAG	2 cut(s)	35, 656
Bst2UI	CCWGG	3 cut(s)	152, 347, 371
Bst4CI	ACNGT	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	197, 402
BstDEI	CTNAG	1 cut(s)	469
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	3 cut(s)	310, 516, 708
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	429
BstNI	CCWGG	3 cut(s)	152, 347, 371
BstSCI	CCNGG	4 cut(s)	100, 150, 345, 369
BstSLI	GKGCMC	1 cut(s)	406
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	148, 404
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	310, 516, 708
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	197, 402
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	4 cut(s)	147, 374, 402, 403
Cfr42I	CCGCGG	1 cut(s)	95
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	4 cut(s)	137, 245, 362, 389
CviAII	CATG	3 cut(s)	379, 452, 484
CviQI	GTAC	4 cut(s)	137, 245, 362, 389
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	607
Eco24I	GRGCYC	2 cut(s)	179, 406
Eco47I	GGWCC	1 cut(s)	374
EcoO109I	RGGNCCY	2 cut(s)	374, 403
EcoRII	CCWGG	3 cut(s)	150, 345, 369
EcoT38I	GRGCYC	2 cut(s)	179, 406
FaeI	CATG	3 cut(s)	382, 455, 487
FaiI	YATR	7 cut(s)	30, 380, 409, 453, 485, 558, 609
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	3 cut(s)	378, 451, 483
FauI	CCCGC	2 cut(s)	165, 393
Fnu4HI	GCNGC	4 cut(s)	146, 338, 579, 590
FokI	GGATG	2 cut(s)	297, 523
FriOI	GRGCYC	2 cut(s)	179, 406
Fsp4HI	GCNGC	4 cut(s)	146, 338, 579, 590
FspBI	CTAG	1 cut(s)	196
GluI	GCNGC	4 cut(s)	146, 338, 579, 590
GsuI	CTGGAG	2 cut(s)	368, 552
HaeIII	GGCC	2 cut(s)	148, 404
HapII	CCGG	8 cut(s)	13, 102, 116, 140, 180, 304, 438, 582
HgaI	GACGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	3 cut(s)	382, 455, 487
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	8 cut(s)	13, 102, 116, 140, 180, 304, 438, 582
HphI	GGTGA	2 cut(s)	78, 647
Hpy166II	GTNNAC	2 cut(s)	230, 516
Hpy188I	TCNGA	3 cut(s)	260, 465, 523
Hpy188III	TCNNGA	2 cut(s)	180, 332
Hpy8I	GTNNAC	2 cut(s)	230, 516
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	7 cut(s)	67, 86, 375, 449, 487, 501, 554
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	387, 518
HpyCH4V	TGCA	2 cut(s)	451, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	429
HpyF3I	CTNAG	1 cut(s)	469
HpySE526I	ACGT	2 cut(s)	387, 518
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	382, 455, 487
KflI	GGGWCCC	1 cut(s)	374
Kpn2I	TCCGGA	1 cut(s)	179
KpnI	GGTACC	1 cut(s)	365
KspI	CCGCGG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	6 cut(s)	142, 182, 349, 487, 527, 594
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	1 cut(s)	196
MaeII	ACGT	2 cut(s)	387, 518
MalI	GATC	1 cut(s)	330
MbiI	CCGCTC	3 cut(s)	145, 589, 597
MboI	GATC	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	179, 406
MluCI	AATT	3 cut(s)	219, 569, 650
MmeI	TCCRAC	2 cut(s)	338, 488
MnlI	CCTC	9 cut(s)	44, 98, 123, 230, 311, 617, 626, 673, 687
MroI	TCCGGA	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	8 cut(s)	13, 102, 116, 140, 180, 304, 438, 582
MspR9I	CCNGG	4 cut(s)	102, 152, 347, 371
MvaI	CCWGG	3 cut(s)	152, 347, 371
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	429
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	328
NheI	GCTAGC	1 cut(s)	195
NlaIII	CATG	3 cut(s)	382, 455, 487
NlaIV	GGNNCC	8 cut(s)	149, 178, 351, 363, 375, 376, 404, 503
PasI	CCCWGGG	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	460
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	147, 339, 580, 591
Ppu21I	YACGTR	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	150, 345, 369
PspGI	CCWGG	3 cut(s)	150, 345, 369
PspN4I	GGNNCC	8 cut(s)	149, 178, 351, 363, 375, 376, 404, 503
PspOMI	GGGCCC	1 cut(s)	402
PspPI	GGNCC	4 cut(s)	147, 374, 402, 403
PspPPI	RGGWCCY	1 cut(s)	374
RsaI	GTAC	4 cut(s)	138, 246, 363, 390
RsaNI	GTAC	4 cut(s)	137, 245, 362, 389
SacII	CCGCGG	1 cut(s)	95
SatI	GCNGC	4 cut(s)	146, 338, 579, 590
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	4 cut(s)	147, 374, 402, 403
ScrFI	CCNGG	4 cut(s)	102, 152, 347, 371
SduI	GDGCHC	2 cut(s)	179, 406
SfaNI	GCATC	1 cut(s)	419
Sfr303I	CCGCGG	1 cut(s)	95
SgrBI	CCGCGG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	219, 569, 650
SspMI	CTAG	1 cut(s)	196
StyD4I	CCNGG	4 cut(s)	100, 150, 345, 369
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	390, 521
TaqI	TCGA	4 cut(s)	6, 85, 331, 672
TasI	AATT	3 cut(s)	219, 569, 650
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	3 cut(s)	148, 340, 592
TfiI	GAWTC	1 cut(s)	460
TscAI	CASTG	1 cut(s)	360
TseI	GCWGC	1 cut(s)	578
TspDTI	ATGAA	3 cut(s)	201, 468, 573
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	2 cut(s)	219, 569
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.