Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004100

Physical Location & Seq

Genomic Coordinates Forward (+)

91366182 .. 91371610

Gene Structure 5429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAGAGATTTAGCAAAGCCCCATTGCTTTTCCACCGTTATTCTTCTCCTCACTTTACTCTCTTTCTTCTCCGTTGCCAAATCCAAAGATACCTTGTCTGCAACTGAATCTCTCGGACCAAACCAGACCCTCGTCTCCGCCGGTGAGGTTTTCGAATTGGGTTTCTTCGAGCTAGGCACAGACGTCTCAAGATGGTACTTGGGCATATGGTACAAGAAAATCGAAAAAAAAACTGTTGTTTGGGAAGCCAACAGAGACAACCCGCTCCCAAACAACTCATCCAGTCTCAAAATCGGTTACGATGGAAAACTTTCTCTTGTGGATGAATCCGGAAACGTTTCTTGGTCCAGCAATCAATCACAATTTGTTGGCGTCTCTAAAAATCCAATCCTGCAGCTTTTGGATTCCGGCAATTTGGTCCTCAAAGAAGCAAATGAAATCAACCCTAACAAGTTTCTCTGGCAGAGCTTCGACCATCCTACAGACACTTTGTTGCCGGAGATGAAGCTTGGATGGAACTTGAATACTAGTTTGGACAGATACATATCGTCATGGAAAACTCCAGAAGACCCTTCTACAGGTGATTACTCCTTCAAGCTAGACTACCACGGTTTCCCGGAGGTTTTCCTCCGGCAGAAACAGTCCATAATATACCGGAGCGGGCCCTGGAATGGACTGAGATTTAGCGGCGTGCCAGAGATGAACGCCGGTAATGGTATTGGTTTCAACTTCGTTGTAAATGATGAGGAAGTGTACTACTCGTTTTCGGAACAAGGCAATGAAACTAATCCAGCTCTGAATTCAAGGCTGATCGTAACTCCCTCCGGCAACCTCCAACGGCTGACGTGGATCGAGAGCAGCAAGATCTGGAACAAGTACTGGTTCGCTCCCAAGGACCAATGCGACAGTTACAGCGAGTGCGGGCCCTATGGTGTCTGCGACGCCAACGCTTCGCCAGTGTGTAAGTGCATGAAGGGGTTCCGACCTAAGAACCCTTCGGCGTGGAGCTTGAGAGATGGCTCCGACGGGTGTGAGCGAGAGACGGAGCTGGAGTGTGGGAATAAGGACAAGTTCATGAAGGTGGAGAATGTGAAGCTGCCGGAGAGCGGCGGAGCGGTGGTGGACATGGAGATGAGTTTGGAGGAGTGTAAGGTGAAGTGTTTGGGGAACTGCTCGTGTAGTGGTTATTCGAGTGCGAGGATTCAGAATGGAGGGAGTGGATGTGTGATGTGGTTTGGGAAGTTGATGGATATGAGGAGTTATGCGGACGGCGGGCAAGAGTTCTATCTCCGGTTAGCAGCTTCTGAACTAGCTGTTACTGTCTACCAATTATATGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

447

Amino Acids

49.98

Weight (kDa)

5.17

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	78 - 186	5.6e-35	D-mannose binding lectin
S_locus_glycop	PF00954	218 - 331	1.4e-35	S-locus glycoprotein domain
PAN_2	PF08276	352 - 418	6.6e-21	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65790 AT1G65790 AT1G65790 AT1G65800 AT1G65800 AT4G21380 AT4G21380 AT5G39370
fragaria_vesca	FvH4_3g03430
malus_domestica	MD02G1167300.v1.1 MD03G1187400.v1.1
prunus_persica	Prupe.4G032300_v2.0.a1 Prupe.4G237700_v2.0.a1 Prupe.4G251300_v2.0.a1
pyrus_communis	pycom03g14020
rosa_chinensis	RchiOBHm_Chr5g0005211 RchiOBHm_Chr5g0074281
rosa_laevigata	RLG00000031300 RLG00000036463
rosa_multiflora	Rmu_co7992028.1_g000001 Rmu_sc0004706.1_g000005 Rmu_sc0014528.1_g000001 Rmu_sc0028767.1_g000001 Rmu_sc0028768.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007200 Rroxscaffold_1G00070460
rosa_rugosa	Rorug04G0416100 Rorug05G0429800
rosa_samantha	Rh5AG487600 Rh5CG048800 Rh5CG531400 Rh5DG521200
rosa_wichuraiana	Rw5G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccBSI	CCGCTC	4 cut(s)	265, 660, 1107, 1115
AccI	GTMKAC	1 cut(s)	1323
AccIII	TCCGGA	1 cut(s)	329
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	1 cut(s)	857
AcsI	RAATTY	1 cut(s)	799
AcyI	GRCGYC	3 cut(s)	183, 372, 942
AfaI	GTAC	4 cut(s)	197, 212, 755, 878
AfiI	CCNNNNNNNGG	3 cut(s)	578, 671, 1106
AgsI	TTSAA	4 cut(s)	523, 595, 727, 804
AhlI	ACTAGT	1 cut(s)	527
AjiI	CACGTC	1 cut(s)	846
AjnI	CCWGG	1 cut(s)	665
AjuI	GAANNNNNNNTTGG	4 cut(s)	325, 357, 515, 547
Alw26I	GTCTC	6 cut(s)	139, 190, 249, 290, 379, 1034
AlwI	GGATC	1 cut(s)	857
AlwNI	CAGNNNCTG	1 cut(s)	1304
Aor13HI	TCCGGA	1 cut(s)	329
AoxI	GGCC	2 cut(s)	662, 923
ApaI	GGGCCC	2 cut(s)	666, 927
ApeKI	GCWGC	4 cut(s)	394, 858, 1096, 1298
ApoI	RAATTY	1 cut(s)	799
Asp700I	GAANNNNTTC	3 cut(s)	310, 337, 977
AspS9I	GGNCC	8 cut(s)	116, 345, 418, 662, 663, 895, 923, 924
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	3 cut(s)	155, 593, 1165
AsuII	TTCGAA	1 cut(s)	153
AvaII	GGWCC	4 cut(s)	116, 345, 418, 895
BaeGI	GKGCMC	2 cut(s)	666, 927
BanII	GRGCYC	2 cut(s)	666, 927
BauI	CACGAG	1 cut(s)	1174
BbsI	GAAGAC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	406, 870, 1083, 1310
BccI	CCATC	6 cut(s)	186, 296, 483, 507, 1010, 1240
BceAI	ACGGC	2 cut(s)	854, 1285
BciT130I	CCWGG	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	6 cut(s)	139, 190, 249, 290, 379, 1034
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	4 cut(s)	173, 528, 599, 1310
BfmI	CTRYAG	3 cut(s)	392, 480, 576
BglII	AGATCT	1 cut(s)	864
BisI	GCNGC	6 cut(s)	395, 688, 859, 1097, 1108, 1299
BlsI	GCNGC	6 cut(s)	396, 689, 860, 1098, 1109, 1300
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	2 cut(s)	617, 667
Bme18I	GGWCC	4 cut(s)	116, 345, 418, 895
BmgBI	CACGTC	1 cut(s)	846
BmgT120I	GGNCC	8 cut(s)	116, 345, 418, 662, 663, 895, 923, 924
BmiI	GGNNCC	4 cut(s)	664, 925, 980, 1021
BmrFI	CCNGG	2 cut(s)	617, 667
BoxI	GACNNNNGTC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	573
BpmI	CTGGAG	2 cut(s)	546, 1070
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	172, 1030
BpuMI	CCSGG	1 cut(s)	617
BsaBI	GATNNNNATC	1 cut(s)	544
BsaHI	GRCGYC	3 cut(s)	183, 372, 942
BsaJI	CCNNGG	3 cut(s)	607, 665, 891
BsaWI	WCCGGW	3 cut(s)	329, 654, 1290
BsaXI	ACNNNNNCTCC	6 cut(s)	1037, 1067, 1104, 1134, 1207, 1237
Bsc4I	CCNNNNNNNGG	3 cut(s)	578, 671, 1106
Bse118I	RCCGGY	2 cut(s)	140, 707
Bse1I	ACTGG	3 cut(s)	282, 884, 956
Bse3DI	GCAATG	2 cut(s)	22, 784
Bse8I	GATNNNNATC	1 cut(s)	544
BseAI	TCCGGA	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	3 cut(s)	607, 665, 891
BseGI	GGATG	5 cut(s)	278, 328, 475, 518, 1226
BseJI	GATNNNNATC	1 cut(s)	544
BseLI	CCNNNNNNNGG	3 cut(s)	578, 671, 1106
BseMI	GCAATG	2 cut(s)	22, 784
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	3 cut(s)	282, 884, 956
BseRI	GAGGAG	3 cut(s)	38, 1157, 1270
BseSI	GKGCMC	2 cut(s)	666, 927
BseXI	GCAGC	4 cut(s)	406, 870, 1083, 1310
BshFI	GGCC	2 cut(s)	664, 925
BslI	CCNNNNNNNGG	3 cut(s)	578, 671, 1106
BsmAI	GTCTC	6 cut(s)	139, 190, 249, 290, 379, 1034
BsmBI	CGTCTC	4 cut(s)	139, 190, 379, 1034
BsnI	GGCC	2 cut(s)	664, 925
Bsp119I	TTCGAA	1 cut(s)	153
Bsp120I	GGGCCC	2 cut(s)	662, 923
Bsp1286I	GDGCHC	2 cut(s)	666, 927
Bsp13I	TCCGGA	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	810, 849, 864
BspANI	GGCC	2 cut(s)	664, 925
BspCNI	CTCAG	1 cut(s)	669
BspEI	TCCGGA	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	1074
BspLI	GGNNCC	4 cut(s)	664, 925, 980, 1021
BspMAI	CTGCAG	1 cut(s)	396
BspPI	GGATC	1 cut(s)	857
BspT104I	TTCGAA	1 cut(s)	153
BsrBI	CCGCTC	4 cut(s)	265, 660, 1107, 1115
BsrDI	GCAATG	2 cut(s)	22, 784
BsrFI	RCCGGY	2 cut(s)	140, 707
BsrI	ACTGG	3 cut(s)	282, 884, 956
BssAI	RCCGGY	2 cut(s)	140, 707
BssECI	CCNNGG	3 cut(s)	607, 665, 891
BssMI	GATC	3 cut(s)	810, 849, 864
BssNI	GRCGYC	3 cut(s)	183, 372, 942
BssSI	CACGAG	1 cut(s)	1174
BssT1I	CCWWGG	1 cut(s)	891
Bst2BI	CACGAG	1 cut(s)	1174
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	6 cut(s)	37, 235, 611, 642, 908, 1321
BstACI	GRCGYC	3 cut(s)	183, 372, 942
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	4 cut(s)	662, 692, 923, 1274
BstDEI	CTNAG	2 cut(s)	677, 987
BstDSI	CCRYGG	1 cut(s)	607
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	5 cut(s)	278, 328, 475, 518, 1226
BstKTI	GATC	3 cut(s)	813, 852, 867
BstMAI	GTCTC	6 cut(s)	139, 190, 249, 290, 379, 1034
BstMBI	GATC	3 cut(s)	810, 849, 864
BstNI	CCWGG	1 cut(s)	667
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	615, 665
BstSFI	CTRYAG	3 cut(s)	392, 480, 576
BstSLI	GKGCMC	2 cut(s)	666, 927
BstV1I	GCAGC	4 cut(s)	406, 870, 1083, 1310
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	1 cut(s)	864
BstXI	CCANNNNNNTGG	1 cut(s)	1334
BstYI	RGATCY	1 cut(s)	864
BsuRI	GGCC	2 cut(s)	664, 925
BtgI	CCRYGG	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	846
BtsCI	GGATG	5 cut(s)	278, 328, 475, 518, 1226
BtsIMutI	CAGTG	1 cut(s)	963
Cac8I	GCNNGC	4 cut(s)	662, 692, 923, 1274
CaiI	CAGNNNCTG	1 cut(s)	1304
CciI	TCATGA	1 cut(s)	1074
Cfr10I	RCCGGY	2 cut(s)	140, 707
Cfr13I	GGNCC	8 cut(s)	116, 345, 418, 662, 663, 895, 923, 924
CseI	GACGC	2 cut(s)	361, 950
Csp6I	GTAC	4 cut(s)	196, 211, 754, 877
CviAII	CATG	4 cut(s)	552, 970, 1075, 1126
CviQI	GTAC	4 cut(s)	196, 211, 754, 877
DdeI	CTNAG	2 cut(s)	677, 987
DpnI	GATC	3 cut(s)	812, 851, 866
DpnII	GATC	3 cut(s)	810, 849, 864
EciI	GGCGGA	2 cut(s)	127, 1125
Eco130I	CCWWGG	1 cut(s)	891
Eco24I	GRGCYC	2 cut(s)	666, 927
Eco47I	GGWCC	4 cut(s)	116, 345, 418, 895
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	2 cut(s)	663, 924
EcoRI	GAATTC	1 cut(s)	799
EcoRII	CCWGG	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	891
EcoT38I	GRGCYC	2 cut(s)	666, 927
ErhI	CCWWGG	1 cut(s)	891
Esp3I	CGTCTC	4 cut(s)	139, 190, 379, 1034
FaeI	CATG	4 cut(s)	555, 973, 1078, 1129
FatI	CATG	4 cut(s)	551, 969, 1074, 1125
FauI	CCCGC	4 cut(s)	270, 653, 914, 1265
FauNDI	CATATG	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	1323
Fnu4HI	GCNGC	6 cut(s)	395, 688, 859, 1097, 1108, 1299
FokI	GGATG	5 cut(s)	265, 335, 462, 525, 1233
FriOI	GRGCYC	2 cut(s)	666, 927
Fsp4HI	GCNGC	6 cut(s)	395, 688, 859, 1097, 1108, 1299
FspBI	CTAG	4 cut(s)	173, 528, 599, 1310
GluI	GCNGC	6 cut(s)	395, 688, 859, 1097, 1108, 1299
GsuI	CTGGAG	2 cut(s)	546, 1070
HaeIII	GGCC	2 cut(s)	664, 925
HgaI	GACGC	2 cut(s)	361, 950
Hin1I	GRCGYC	3 cut(s)	183, 372, 942
Hin1II	CATG	4 cut(s)	555, 973, 1078, 1129
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	4 cut(s)	107, 326, 404, 1201
HphI	GGTGA	3 cut(s)	155, 593, 1165
Hpy166II	GTNNAC	3 cut(s)	754, 1123, 1324
Hpy188I	TCNGA	7 cut(s)	116, 769, 798, 983, 1024, 1206, 1306
Hpy188III	TCNNGA	6 cut(s)	189, 330, 563, 853, 868, 1075
Hpy8I	GTNNAC	3 cut(s)	754, 1123, 1324
Hpy99I	CGWCG	2 cut(s)	944, 1028
HpyAV	CCTTC	5 cut(s)	582, 601, 967, 1005, 1072
HpyCH4III	ACNGT	6 cut(s)	37, 235, 611, 642, 908, 1321
HpyCH4IV	ACGT	3 cut(s)	183, 336, 845
HpyCH4V	TGCA	3 cut(s)	101, 394, 969
HpyF3I	CTNAG	2 cut(s)	677, 987
HpySE526I	ACGT	3 cut(s)	183, 336, 845
Hsp92I	GRCGYC	3 cut(s)	183, 372, 942
Hsp92II	CATG	4 cut(s)	555, 973, 1078, 1129
Kpn2I	TCCGGA	1 cut(s)	329
Kzo9I	GATC	3 cut(s)	810, 849, 864
LmnI	GCTCC	7 cut(s)	270, 657, 892, 1005, 1025, 1045, 1112
Lsp1109I	GCAGC	4 cut(s)	406, 870, 1083, 1310
MaeI	CTAG	4 cut(s)	173, 528, 599, 1310
MaeII	ACGT	3 cut(s)	183, 336, 845
MaeIII	GTNAC	4 cut(s)	296, 814, 908, 1315
MalI	GATC	3 cut(s)	812, 851, 866
MbiI	CCGCTC	4 cut(s)	265, 660, 1107, 1115
MboI	GATC	3 cut(s)	810, 849, 864
MboII	GAAGA	4 cut(s)	35, 58, 157, 578
MflI	RGATCY	1 cut(s)	864
MhlI	GDGCHC	2 cut(s)	666, 927
MluCI	AATT	5 cut(s)	155, 362, 412, 799, 1328
MmeI	TCCRAC	3 cut(s)	859, 1006, 1047
MroI	TCCGGA	1 cut(s)	329
MroXI	GAANNNNTTC	3 cut(s)	310, 337, 977
MslI	CAYNNNNRTG	2 cut(s)	1079, 1130
MspR9I	CCNGG	2 cut(s)	617, 667
MvaI	CCWGG	1 cut(s)	667
NciI	CCSGG	1 cut(s)	617
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	3 cut(s)	810, 849, 864
NlaIII	CATG	4 cut(s)	555, 973, 1078, 1129
NlaIV	GGNNCC	4 cut(s)	664, 925, 980, 1021
NspV	TTCGAA	1 cut(s)	153
PagI	TCATGA	1 cut(s)	1074
PdmI	GAANNNNTTC	3 cut(s)	310, 337, 977
PfeI	GAWTC	4 cut(s)	107, 326, 404, 1201
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	6 cut(s)	396, 689, 860, 1098, 1109, 1300
PshAI	GACNNNNGTC	1 cut(s)	131
Psp1406I	AACGTT	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	4 cut(s)	664, 925, 980, 1021
PspOMI	GGGCCC	2 cut(s)	662, 923
PspPI	GGNCC	8 cut(s)	116, 345, 418, 662, 663, 895, 923, 924
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	1304
PsuI	RGATCY	1 cut(s)	864
RsaI	GTAC	4 cut(s)	197, 212, 755, 878
RsaNI	GTAC	4 cut(s)	196, 211, 754, 877
RseI	CAYNNNNRTG	2 cut(s)	1079, 1130
SatI	GCNGC	6 cut(s)	395, 688, 859, 1097, 1108, 1299
Sau3AI	GATC	3 cut(s)	810, 849, 864
Sau96I	GGNCC	8 cut(s)	116, 345, 418, 662, 663, 895, 923, 924
ScaI	AGTACT	1 cut(s)	878
ScrFI	CCNGG	2 cut(s)	617, 667
SduI	GDGCHC	2 cut(s)	666, 927
SfcI	CTRYAG	3 cut(s)	392, 480, 576
SfuI	TTCGAA	1 cut(s)	153
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	4 cut(s)	116, 345, 418, 895
SmiMI	CAYNNNNRTG	2 cut(s)	1079, 1130
SmlI	CTYRAG	2 cut(s)	187, 1009
SmoI	CTYRAG	2 cut(s)	187, 1009
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	5 cut(s)	155, 362, 412, 799, 1328
SspMI	CTAG	4 cut(s)	173, 528, 599, 1310
StyD4I	CCNGG	2 cut(s)	615, 665
StyI	CCWWGG	1 cut(s)	891
TaaI	ACNGT	6 cut(s)	37, 235, 611, 642, 908, 1321
TaiI	ACGT	3 cut(s)	186, 339, 848
TaqI	TCGA	6 cut(s)	153, 168, 222, 471, 852, 1190
TasI	AATT	5 cut(s)	155, 362, 412, 799, 1328
TatI	WGTACW	2 cut(s)	753, 876
TauI	GCSGC	2 cut(s)	690, 1110
TfiI	GAWTC	4 cut(s)	107, 326, 404, 1201
TscAI	CASTG	1 cut(s)	963
TseI	GCWGC	4 cut(s)	394, 858, 1096, 1298
TspDTI	ATGAA	8 cut(s)	339, 450, 518, 716, 795, 986, 1063, 1091
TspGWI	ACGGA	2 cut(s)	61, 1058
TspRI	CASTG	1 cut(s)	963
VpaK11BI	GGWCC	4 cut(s)	116, 345, 418, 895
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	1 cut(s)	799
XmiI	GTMKAC	1 cut(s)	1323
XmnI	GAANNNNTTC	3 cut(s)	310, 337, 977
XspI	CTAG	4 cut(s)	173, 528, 599, 1310
ZraI	GACGTC	1 cut(s)	184
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.