Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004706.1

Orthogroup ID

OG0004100

Physical Location & Seq

Genomic Coordinates Reverse (-)

20270 .. 21169

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004706.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgagagctttagcaaagcacaccattcttcttctactgactttactctctttcttctccattgccaaatccaaagactccttatcgctcggaacaggcctcgtctctgccggcgaggttttcgagttgggttttttcaaccctggcagacactcaagatggtacttgggcatatggtacatgaaaatcaaagaaagaacagttgtttgggtggccaacagagacaatccgctcccaaacaactcagccagtctcaaaatcggatacgacggaatactttctcttgtggatgaatccggaaaagtttcttggatgtcaagcaatcaatcacaatttgttaaaaatccaatccttcagcttttggattccggcaacttggtcctcaaagaagcaaatgaaaccaaccctaacgagttcctctggcagagcttcgactaccctacacacactttgttgccggagatgaagctcggaaggaactcgaataccggattggatagatacataacctcgtggaaaactccacaagacccttctactggtgattattccttcaagctcgactaccgcggtttcccggaggctttcctccggcagagacagtcgataaagtaccggagcggcccctggaacgggttgagttttagcggggctccggagatgaacaccgctagctctaatggtattggtttcaaattcgttgtaaacaatgaggagatgtactactctttttcggaaactaatccagctctgtattcacggctgattgtatctccctccggcaacatccaacggctttcgtggatcgagagccgcaagacctggagccagtgctggtaccttcccagggacccatgcgacacgtacagggagtgcgggccctatggtgtctgcgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

299

Amino Acids

34.02

Weight (kDa)

8.55

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65790 AT1G65790 AT1G65790 AT1G65800 AT1G65800 AT4G21380 AT4G21380 AT5G39370
fragaria_vesca	FvH4_3g03430
malus_domestica	MD02G1167300.v1.1 MD03G1187400.v1.1
prunus_persica	Prupe.4G032300_v2.0.a1 Prupe.4G237700_v2.0.a1 Prupe.4G251300_v2.0.a1
pyrus_communis	pycom03g14020
rosa_chinensis	RchiOBHm_Chr5g0005211 RchiOBHm_Chr5g0074281
rosa_laevigata	RLG00000031300 RLG00000036463
rosa_multiflora	Rmu_co7992028.1_g000001 Rmu_sc0004706.1_g000005 Rmu_sc0014528.1_g000001 Rmu_sc0028767.1_g000001 Rmu_sc0028768.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007200 Rroxscaffold_1G00070460
rosa_rugosa	Rorug04G0416100 Rorug05G0429800
rosa_samantha	Rh5AG487600 Rh5CG048800 Rh5CG531400 Rh5DG521200
rosa_wichuraiana	Rw5G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	837
AccBSI	CCGCTC	2 cut(s)	232, 621
AccII	CGCG	1 cut(s)	570
AccIII	TCCGGA	2 cut(s)	296, 655
AciI	CCGC	8 cut(s)	230, 568, 570, 621, 648, 669, 814, 876
AclWI	GGATC	1 cut(s)	812
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	695
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	6 cut(s)	164, 179, 614, 722, 839, 866
AfiI	CCNNNNNNNGG	4 cut(s)	539, 632, 633, 847
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	3 cut(s)	139, 556, 694
AjnI	CCWGG	4 cut(s)	142, 626, 821, 845
AjuI	GAANNNNNNNTTGG	6 cut(s)	190, 222, 292, 324, 476, 508
AluBI	AGCT	7 cut(s)	8, 358, 429, 469, 559, 675, 749
AluI	AGCT	7 cut(s)	8, 358, 429, 469, 559, 675, 749
Alw26I	GTCTC	4 cut(s)	109, 216, 257, 592
AlwI	GGATC	1 cut(s)	812
Aor13HI	TCCGGA	2 cut(s)	296, 655
AoxI	GGCC	4 cut(s)	97, 213, 622, 878
ApaI	GGGCCC	1 cut(s)	882
ApoI	RAATTY	1 cut(s)	695
Asp700I	GAANNNNTTC	2 cut(s)	277, 304
Asp718I	GGTACC	1 cut(s)	837
AspS9I	GGNCC	5 cut(s)	379, 623, 850, 878, 879
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	554
AsuNHI	GCTAGC	1 cut(s)	671
AvaII	GGWCC	2 cut(s)	379, 850
BaeGI	GKGCMC	1 cut(s)	882
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	837
BanII	GRGCYC	2 cut(s)	655, 882
BauI	CACGAG	1 cut(s)	511
BccI	CCATC	1 cut(s)	153
BceAI	ACGGC	2 cut(s)	776, 809
BciT130I	CCWGG	4 cut(s)	144, 628, 823, 847
BciVI	GTATCC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	578
BcoDI	GTCTC	4 cut(s)	109, 216, 257, 592
BfaI	CTAG	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	622, 814
BlsI	GCNGC	2 cut(s)	623, 815
Bme1390I	CCNGG	5 cut(s)	144, 578, 628, 823, 847
Bme18I	GGWCC	2 cut(s)	379, 850
BmgT120I	GGNCC	5 cut(s)	379, 623, 850, 878, 879
BmiI	GGNNCC	7 cut(s)	625, 654, 827, 839, 851, 852, 880
BmrFI	CCNGG	5 cut(s)	144, 578, 628, 823, 847
BmtI	GCTAGC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	864
BsaJI	CCNNGG	5 cut(s)	142, 568, 626, 845, 846
BsaWI	WCCGGW	4 cut(s)	296, 488, 615, 655
Bsc4I	CCNNNNNNNGG	4 cut(s)	539, 632, 633, 847
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	249, 544, 829
Bse3DI	GCAATG	1 cut(s)	60
BseAI	TCCGGA	2 cut(s)	296, 655
BseBI	CCWGG	4 cut(s)	144, 628, 823, 847
BseDI	CCNNGG	5 cut(s)	142, 568, 626, 845, 846
BseGI	GGATG	3 cut(s)	295, 318, 786
BseLI	CCNNNNNNNGG	4 cut(s)	539, 632, 633, 847
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	249, 544, 829
BseRI	GAGGAG	1 cut(s)	728
BseSI	GKGCMC	1 cut(s)	882
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	4 cut(s)	99, 215, 624, 880
BshNI	GGYRCC	1 cut(s)	837
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	4 cut(s)	539, 632, 633, 847
BsmAI	GTCTC	4 cut(s)	109, 216, 257, 592
BsmBI	CGTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	863
BsnI	GGCC	4 cut(s)	99, 215, 624, 880
Bsp120I	GGGCCC	1 cut(s)	878
Bsp1286I	GDGCHC	2 cut(s)	655, 882
Bsp13I	TCCGGA	2 cut(s)	296, 655
Bsp143I	GATC	1 cut(s)	804
BspACI	CCGC	8 cut(s)	230, 568, 570, 621, 648, 669, 814, 876
BspANI	GGCC	4 cut(s)	99, 215, 624, 880
BspCNI	CTCAG	1 cut(s)	257
BspEI	TCCGGA	2 cut(s)	296, 655
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	7 cut(s)	625, 654, 827, 839, 851, 852, 880
BspOI	GCTAGC	1 cut(s)	675
BspPI	GGATC	1 cut(s)	812
BspT107I	GGYRCC	1 cut(s)	837
BsrBI	CCGCTC	2 cut(s)	232, 621
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	249, 544, 829
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	5 cut(s)	142, 568, 626, 845, 846
BssMI	GATC	1 cut(s)	804
BssSI	CACGAG	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	511
Bst2UI	CCWGG	4 cut(s)	144, 628, 823, 847
Bst4CI	ACNGT	2 cut(s)	202, 603
BstBAI	YACGTR	1 cut(s)	864
BstC8I	GCNNGC	3 cut(s)	112, 673, 878
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	3 cut(s)	295, 318, 786
BstFNI	CGCG	1 cut(s)	570
BstKTI	GATC	1 cut(s)	807
BstMAI	GTCTC	4 cut(s)	109, 216, 257, 592
BstMBI	GATC	1 cut(s)	804
BstNI	CCWGG	4 cut(s)	144, 628, 823, 847
BstSCI	CCNGG	5 cut(s)	142, 576, 626, 821, 845
BstSLI	GKGCMC	1 cut(s)	882
BstUI	CGCG	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	99, 215, 624, 880
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	3 cut(s)	295, 318, 786
BtsIMutI	CAGTG	1 cut(s)	836
Cac8I	GCNNGC	3 cut(s)	112, 673, 878
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	5 cut(s)	379, 623, 850, 878, 879
Cfr42I	CCGCGG	1 cut(s)	571
Csp6I	GTAC	6 cut(s)	163, 178, 613, 721, 838, 865
CviAII	CATG	2 cut(s)	181, 855
CviQI	GTAC	6 cut(s)	163, 178, 613, 721, 838, 865
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	1 cut(s)	806
DpnII	GATC	1 cut(s)	804
EaeI	YGGCCR	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	2 cut(s)	655, 882
Eco47I	GGWCC	2 cut(s)	379, 850
Eco57I	CTGAAG	1 cut(s)	338
EcoO109I	RGGNCCY	2 cut(s)	850, 879
EcoRII	CCWGG	4 cut(s)	142, 626, 821, 845
EcoT38I	GRGCYC	2 cut(s)	655, 882
Esp3I	CGTCTC	1 cut(s)	109
FaeI	CATG	2 cut(s)	184, 858
FaiI	YATR	6 cut(s)	173, 175, 182, 506, 856, 885
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	2 cut(s)	180, 854
FauI	CCCGC	2 cut(s)	641, 869
FauNDI	CATATG	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	622, 814
FokI	GGATG	3 cut(s)	302, 325, 773
FriOI	GRGCYC	2 cut(s)	655, 882
Fsp4HI	GCNGC	2 cut(s)	622, 814
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	2 cut(s)	622, 814
GsuI	CTGGAG	1 cut(s)	844
HaeIII	GGCC	4 cut(s)	99, 215, 624, 880
Hin1II	CATG	2 cut(s)	184, 858
HinfI	GANTC	3 cut(s)	77, 293, 365
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	4 cut(s)	92, 263, 473, 736
Hpy188III	TCNNGA	4 cut(s)	156, 297, 656, 808
Hpy8I	GTNNAC	1 cut(s)	706
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	5 cut(s)	362, 468, 543, 562, 851
HpyCH4III	ACNGT	2 cut(s)	202, 603
HpyCH4IV	ACGT	1 cut(s)	863
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	863
Hsp92II	CATG	2 cut(s)	184, 858
KflI	GGGWCCC	1 cut(s)	850
Kpn2I	TCCGGA	2 cut(s)	296, 655
KpnI	GGTACC	1 cut(s)	841
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
KspI	CCGCGG	1 cut(s)	571
Kzo9I	GATC	1 cut(s)	804
LmnI	GCTCC	4 cut(s)	237, 618, 658, 825
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	1 cut(s)	863
MalI	GATC	1 cut(s)	806
MbiI	CCGCTC	2 cut(s)	232, 621
MboI	GATC	1 cut(s)	804
MboII	GAAGA	3 cut(s)	20, 23, 46
MhlI	GDGCHC	2 cut(s)	655, 882
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	332, 695
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	814
MnlI	CCTC	9 cut(s)	109, 110, 392, 428, 520, 574, 599, 706, 787
Mox20I	TGGCCA	1 cut(s)	215
MroI	TCCGGA	2 cut(s)	296, 655
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	2 cut(s)	277, 304
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	570
MspR9I	CCNGG	5 cut(s)	144, 578, 628, 823, 847
MvaI	CCWGG	4 cut(s)	144, 628, 823, 847
MvnI	CGCG	1 cut(s)	570
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	578
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	1 cut(s)	804
NgoMIV	GCCGGC	1 cut(s)	110
NheI	GCTAGC	1 cut(s)	671
NlaIII	CATG	2 cut(s)	184, 858
NlaIV	GGNNCC	7 cut(s)	625, 654, 827, 839, 851, 852, 880
PasI	CCCWGGG	1 cut(s)	846
PceI	AGGCCT	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	277, 304
PfeI	GAWTC	2 cut(s)	293, 365
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	2 cut(s)	623, 815
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	864
PpuMI	RGGWCCY	1 cut(s)	850
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	4 cut(s)	142, 626, 821, 845
PspGI	CCWGG	4 cut(s)	142, 626, 821, 845
PspN4I	GGNNCC	7 cut(s)	625, 654, 827, 839, 851, 852, 880
PspOMI	GGGCCC	1 cut(s)	878
PspPI	GGNCC	5 cut(s)	379, 623, 850, 878, 879
PspPPI	RGGWCCY	1 cut(s)	850
RsaI	GTAC	6 cut(s)	164, 179, 614, 722, 839, 866
RsaNI	GTAC	6 cut(s)	163, 178, 613, 721, 838, 865
SacII	CCGCGG	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	622, 814
Sau3AI	GATC	1 cut(s)	804
Sau96I	GGNCC	5 cut(s)	379, 623, 850, 878, 879
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	5 cut(s)	144, 578, 628, 823, 847
SduI	GDGCHC	2 cut(s)	655, 882
Sfr303I	CCGCGG	1 cut(s)	571
SgrBI	CCGCGG	1 cut(s)	571
SinI	GGWCC	2 cut(s)	379, 850
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	2 cut(s)	332, 695
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	8 cut(s)	230, 568, 570, 621, 648, 669, 814, 876
SspMI	CTAG	1 cut(s)	672
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	5 cut(s)	142, 576, 626, 821, 845
TaaI	ACNGT	2 cut(s)	202, 603
TaiI	ACGT	1 cut(s)	866
TaqI	TCGA	6 cut(s)	123, 432, 482, 561, 605, 807
TasI	AATT	2 cut(s)	332, 695
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	2 cut(s)	624, 816
TfiI	GAWTC	2 cut(s)	293, 365
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	836
TspDTI	ATGAA	5 cut(s)	197, 306, 411, 479, 677
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	836
VpaK11BI	GGWCC	2 cut(s)	379, 850
XapI	RAATTY	1 cut(s)	695
XmnI	GAANNNNTTC	2 cut(s)	277, 304
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.