Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004100

Physical Location & Seq

Genomic Coordinates Forward (+)

15757717 .. 15758109

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTGGTACCGAAAGTTGCCTAATGAAGTTGTTTGGGTTGCCAACAGAGACACTCCAGTCTCCAAGCCCATCGGAACACTAAAAATCTTGAATAACAACCTCCACCTCATTGATCATACTAGTAACTCCGTTTGGTCAACCCAAGTGACTAGCCAAAGTCTGAAGTCGGAACTGACCGCCGAGCTTCTTGACAACGGCAATTTGGTATTGCGGTACTCCAACAACAACGAGACAAGTGGATTTTTATGGCAAAGCTTCGGCTTTCCGACGGATACATTACTCCATGATATGAAAGTGGGTTGGGATAAGAAGTCGGGTCTAAATAGGATATTACAATCATGGAAAAACAGGAATGATCCTTCAACTGGCGATTACACTTATAGTAAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0032870 GO:0033036 GO:0033993 GO:0034613 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070727 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 DUF3660 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

130

Amino Acids

14.9

Weight (kDa)

8.93

Isoelectric Point (pI)

23.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	10 - 115	2.1e-31	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65790 AT1G65790 AT1G65790 AT1G65800 AT1G65800 AT4G21380 AT4G21380 AT5G39370
fragaria_vesca	FvH4_3g03430
malus_domestica	MD02G1167300.v1.1 MD03G1187400.v1.1
prunus_persica	Prupe.4G032300_v2.0.a1 Prupe.4G237700_v2.0.a1 Prupe.4G251300_v2.0.a1
pyrus_communis	pycom03g14020
rosa_chinensis	RchiOBHm_Chr5g0005211 RchiOBHm_Chr5g0074281
rosa_laevigata	RLG00000031300 RLG00000036463
rosa_multiflora	Rmu_co7992028.1_g000001 Rmu_sc0004706.1_g000005 Rmu_sc0014528.1_g000001 Rmu_sc0028767.1_g000001 Rmu_sc0028768.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007200 Rroxscaffold_1G00070460
rosa_rugosa	Rorug04G0416100 Rorug05G0429800
rosa_samantha	Rh5AG487600 Rh5CG048800 Rh5CG531400 Rh5DG521200
rosa_wichuraiana	Rw5G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	6
AciI	CCGC	2 cut(s)	177, 211
AclWI	GGATC	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	8, 215
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	91, 363
AhlI	ACTAGT	1 cut(s)	119
AluBI	AGCT	2 cut(s)	184, 255
AluI	AGCT	2 cut(s)	184, 255
Alw26I	GTCTC	3 cut(s)	42, 64, 224
AlwI	GGATC	1 cut(s)	350
Asp718I	GGTACC	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	6
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	211
BciVI	GTATCC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	112
BcoDI	GTCTC	3 cut(s)	42, 64, 224
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	2 cut(s)	120, 150
BfuI	GTATCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	56, 370
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	56, 370
BshNI	GGYRCC	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	3 cut(s)	42, 64, 224
Bsp143I	GATC	2 cut(s)	112, 355
BspACI	CCGC	2 cut(s)	177, 211
BspLI	GGNNCC	1 cut(s)	8
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	56, 370
BssMI	GATC	2 cut(s)	112, 355
BstDEI	CTNAG	1 cut(s)	390
BstKTI	GATC	2 cut(s)	115, 358
BstMAI	GTCTC	3 cut(s)	42, 64, 224
BstMBI	GATC	2 cut(s)	112, 355
BsuI	GTATCC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	7, 214
CviAII	CATG	2 cut(s)	284, 339
CviJI	RGCY	5 cut(s)	67, 153, 184, 255, 261
CviKI_1	RGCY	5 cut(s)	67, 153, 184, 255, 261
CviQI	GTAC	2 cut(s)	7, 214
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	114, 357
DpnII	GATC	2 cut(s)	112, 355
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	182
FaeI	CATG	2 cut(s)	287, 342
FaiI	YATR	6 cut(s)	117, 247, 285, 290, 340, 381
FatI	CATG	2 cut(s)	283, 338
FbaI	TGATCA	1 cut(s)	112
FspBI	CTAG	2 cut(s)	120, 150
GsuI	CTGGAG	1 cut(s)	39
Hin1II	CATG	2 cut(s)	287, 342
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	4 cut(s)	74, 162, 169, 267
Hpy188III	TCNNGA	2 cut(s)	88, 188
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	1 cut(s)	369
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	287, 342
KpnI	GGTACC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	112, 355
LpnPI	CCDG	3 cut(s)	69, 334, 351
MaeI	CTAG	2 cut(s)	120, 150
MaeIII	GTNAC	2 cut(s)	122, 145
MalI	GATC	2 cut(s)	114, 357
MboI	GATC	2 cut(s)	112, 355
MluCI	AATT	1 cut(s)	199
MmeI	TCCRAC	3 cut(s)	147, 243, 290
MnlI	CCTC	2 cut(s)	110, 116
NdeII	GATC	2 cut(s)	112, 355
NlaIII	CATG	2 cut(s)	287, 342
NlaIV	GGNNCC	1 cut(s)	8
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	8
RsaI	GTAC	2 cut(s)	8, 215
RsaNI	GTAC	2 cut(s)	7, 214
Sau3AI	GATC	2 cut(s)	112, 355
SetI	ASST	4 cut(s)	102, 108, 186, 257
SpeI	ACTAGT	1 cut(s)	119
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	177, 211
SspMI	CTAG	2 cut(s)	120, 150
TasI	AATT	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	39, 305
TspGWI	ACGGA	2 cut(s)	118, 284
XspI	CTAG	2 cut(s)	120, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.