Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004100

Physical Location & Seq

Genomic Coordinates Reverse (-)

14357548 .. 14358237

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1167300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAACTGGGATTTTTCAGCCCTGAAACAGCACTTGGGTGATTCTTCAGGACTTTTGAAGCTCACCGAGCAAGGAGTTCTTGTTCTCTTTGTGAATAGCTCAAACAGCATTGTGTGGTCATCGAATTCATCAAGAATCGCGGAGAATCCAGTATTGCAACTCTTGGATTCTGGAAATCTTGTGGTGCAAGGTGGGAAAAAAACTAATCCGGATAACTTCTTGTGGCAGAGTTTTGATTATCCTTGTGACACATTCCTACCGGAAATGAAGATTGGTTGGGACTTGGTTATCGGTTTAGATAGGTATGTATCGTCTTGGAAGAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

110

Amino Acids

12.2

Weight (kDa)

4.83

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	12 - 107	1.9e-30	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65790 AT1G65790 AT1G65790 AT1G65800 AT1G65800 AT4G21380 AT4G21380 AT5G39370
fragaria_vesca	FvH4_3g03430
malus_domestica	MD02G1167300.v1.1 MD03G1187400.v1.1
prunus_persica	Prupe.4G032300_v2.0.a1 Prupe.4G237700_v2.0.a1 Prupe.4G251300_v2.0.a1
pyrus_communis	pycom03g14020
rosa_chinensis	RchiOBHm_Chr5g0005211 RchiOBHm_Chr5g0074281
rosa_laevigata	RLG00000031300 RLG00000036463
rosa_multiflora	Rmu_co7992028.1_g000001 Rmu_sc0004706.1_g000005 Rmu_sc0014528.1_g000001 Rmu_sc0028767.1_g000001 Rmu_sc0028768.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007200 Rroxscaffold_1G00070460
rosa_rugosa	Rorug04G0416100 Rorug05G0429800
rosa_samantha	Rh5AG487600 Rh5CG048800 Rh5CG531400 Rh5DG521200
rosa_wichuraiana	Rw5G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	140
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	4 cut(s)	17, 49, 255, 287
AleI	CACNNNNGTG	1 cut(s)	36
AloI	GAACNNNNNNTCC	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	61, 99
AluI	AGCT	2 cut(s)	61, 99
Alw21I	GWGCWC	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	50, 55
Bbv12I	GWGCWC	1 cut(s)	326
BmrI	ACTGGG	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	16
BsaWI	WCCGGW	2 cut(s)	208, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse1I	ACTGG	2 cut(s)	11, 149
BseAI	TCCGGA	1 cut(s)	208
BseNI	ACTGG	2 cut(s)	11, 149
Bsh1236I	CGCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	209, 260
BslFI	GGGAC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp13I	TCCGGA	1 cut(s)	208
BspACI	CCGC	1 cut(s)	140
BspEI	TCCGGA	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	11, 149
Bst6I	CTCTTC	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 105
BstUI	CGCG	1 cut(s)	140
CviJI	RGCY	3 cut(s)	20, 61, 99
CviKI_1	RGCY	3 cut(s)	20, 61, 99
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	124
FaiI	YATR	2 cut(s)	306, 328
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	293
HapII	CCGG	2 cut(s)	209, 260
HinfI	GANTC	4 cut(s)	41, 135, 145, 167
HpaII	CCGG	2 cut(s)	209, 260
HphI	GGTGA	2 cut(s)	50, 55
Hpy188III	TCNNGA	4 cut(s)	48, 132, 171, 209
HpyCH4V	TGCA	2 cut(s)	157, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 105
Kpn2I	TCCGGA	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	314
LpnPI	CCDG	6 cut(s)	33, 35, 156, 162, 222, 273
MaeIII	GTNAC	1 cut(s)	245
MboII	GAAGA	2 cut(s)	36, 280
MhlI	GDGCHC	1 cut(s)	326
MluCI	AATT	1 cut(s)	124
MroI	TCCGGA	1 cut(s)	208
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	2 cut(s)	209, 260
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	67, 105
NmuCI	GTSAC	1 cut(s)	245
OliI	CACNNNNGTG	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	314
PfeI	GAWTC	4 cut(s)	41, 135, 145, 167
RseI	CAYNNNNRTG	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	4 cut(s)	63, 101, 193, 305
SmiMI	CAYNNNNRTG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	140
TaqI	TCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	124
TfiI	GAWTC	4 cut(s)	41, 135, 145, 167
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	3 cut(s)	17, 117, 281
XapI	RAATTY	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.