Rh5CG048800

divergent subfamily of APPLE domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
3441736 .. 3446657
4922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG048800.1

Sequence Viewer

Length: 1137 bp
ATGAAGCTTGGATGGAACTTGAATACTAGTTTGGACAGATACATATCGTCATGGAAAACTCCAGAAGACCCTTCTACAGGAGATTACTCCTTCAAGCTCGACTACCACGGTTTCCCGGAGGTTTTCCTCCGGCAGAAACAGTCCACAATATACCGGAGCGGGCCCTGGAATGGACTGAGATTTAGCGGCGTTCCAGAGATGAACGCCGGTAATGGTATTGGTTTCAACTTCGTTGTAAATGATGAGGAAGTGTACTACTCGTTTTCGGAACAAGGCAATGAAACTAATCCAGCTCTGAATTCAAGGCTGATCGTAACTCCCTCGGGAAACCTCCAACGGCTGACGTGGATCGAGAGCAGCAAGATCTGGAACAAGTACTGGTTCGCTCCCAAGGACCAATGCGACAGTTACAGCGAGTGCGGGCCCTATGGTGTCTGCGACGCCAACGCTTCGCCAGTGTGTAAGTGCATGAAGGGGTTCCAACCTAAGAACCCTTCGGCGTGGAGCTTGAGAGACGGCTCCGACGGGTGTGAGCGAGAGACGGAGCTGGAGTGTGGGAATAAGGACAAGTTTATGAAGGTGGAGAATGTGAAGCTCCCGGAGAGCGGCGGAGCGGTGGTGGACATGGAGATGAGTTTGGAGGAGTGTAAGGTGAAGTGTTTGGGGAACTGCTCGTGTAGTGGTTATTCGAGTGCGAGGATTCAGAATGGAGGGAGTGGATGTGTGATGTGGTTTGGGAAGTTGATGGATATGAGGAGTTATGCCGACGGCGGGCAAGAGTTCTATCTCCGGTTAGCAGCTTCTGAACTAGGTACCACCTTCTTCTTCGCTTGGGAGTTATGGAATGAAGGTCGTGCATTGGATATAATAGATTCTTCAGTTGGTGCTTCATTTTCGGAATCTGAGGTGTTGAGATGCATGCAGGTTGGGCTTTTATGCGTCCAAGAGCGTGCAGAAGATAGGCCTACAATGTCCACTGTGGTTCTGATGTTAAGTAGTGAAAATGCACCACTACCACAGCCTAAAAACCCCGGTTTTTGCCTAGGAAGGAAACCAGAAACAGAGTCATCCTCAAGCAAGCAAGACGAGTCATTCACTGTAAACCAAGTAACTGTCACAATATTAGATCCTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

378

Amino Acids

42.13

Weight (kDa)

4.86

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 51 - 164 1.1e-35 S-locus glycoprotein domain
PAN_2 PF08276 185 - 251 5.1e-21 PAN-like domain
DUF3403 PF11883 333 - 378 2.1e-18 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 913
Acc65I GGTACC 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 812
AccBSI CCGCTC 3 cut(s) 159, 606, 614
AciI CCGC 7 cut(s) 159, 186, 420, 606, 609, 614, 771
AclWI GGATC 2 cut(s) 356, 1121
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 861
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 3 cut(s) 254, 377, 814
AfiI CCNNNNNNNGG 4 cut(s) 77, 170, 605, 771
AgsI TTSAA 4 cut(s) 22, 94, 226, 303
AhlI ACTAGT 1 cut(s) 26
AjiI CACGTC 1 cut(s) 345
AjnI CCWGG 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 7 cut(s) 7, 97, 293, 507, 547, 595, 800
AluI AGCT 7 cut(s) 7, 97, 293, 507, 547, 595, 800
Alw26I GTCTC 2 cut(s) 507, 533
AlwI GGATC 2 cut(s) 356, 1121
AlwNI CAGNNNCTG 1 cut(s) 803
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 3 cut(s) 161, 422, 962
ApaI GGGCCC 2 cut(s) 165, 426
ApeKI GCWGC 2 cut(s) 357, 797
ApoI RAATTY 1 cut(s) 298
Asp700I GAANNNNTTC 1 cut(s) 476
Asp718I GGTACC 1 cut(s) 812
AspA2I CCTAGG 2 cut(s) 1042, 1130
AspS9I GGNCC 5 cut(s) 161, 162, 394, 422, 423
AsuC2I CCSGG 3 cut(s) 116, 599, 1032
AsuHPI GGTGA 1 cut(s) 664
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 394
AvrII CCTAGG 2 cut(s) 1042, 1130
BaeGI GKGCMC 2 cut(s) 165, 426
BanI GGYRCC 1 cut(s) 812
BanII GRGCYC 2 cut(s) 165, 426
BauI CACGAG 1 cut(s) 673
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 369, 809
BccI CCATC 2 cut(s) 6, 739
BceAI ACGGC 3 cut(s) 353, 532, 784
BciT130I CCWGG 1 cut(s) 166
BcnI CCSGG 3 cut(s) 116, 599, 1032
BcoDI GTCTC 2 cut(s) 507, 533
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 4 cut(s) 27, 809, 1043, 1131
BfmI CTRYAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 913
BglII AGATCT 1 cut(s) 363
BisI GCNGC 4 cut(s) 187, 358, 607, 798
BlnI CCTAGG 2 cut(s) 1042, 1130
BlsI GCNGC 4 cut(s) 188, 359, 608, 799
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 4 cut(s) 116, 166, 599, 1032
Bme18I GGWCC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 322
BmgBI CACGTC 1 cut(s) 345
BmgT120I GGNCC 5 cut(s) 161, 162, 394, 422, 423
BmiI GGNNCC 5 cut(s) 163, 424, 479, 520, 814
BmrFI CCNGG 4 cut(s) 116, 166, 599, 1032
BmsI GCATC 1 cut(s) 905
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 1055, 1087
BpmI CTGGAG 2 cut(s) 45, 569
BpuEI CTTGAG 2 cut(s) 529, 1057
BpuMI CCSGG 3 cut(s) 116, 599, 1032
BsaBI GATNNNNATC 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 7 cut(s) 106, 164, 321, 390, 1030, 1042, 1130
BsaWI WCCGGW 2 cut(s) 153, 789
BsaXI ACNNNNNCTCC 6 cut(s) 536, 566, 603, 633, 706, 736
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 170, 605, 771
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 383, 455
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 43
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 7 cut(s) 106, 164, 321, 390, 1030, 1042, 1130
BseGI GGATG 3 cut(s) 17, 725, 1067
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 4 cut(s) 77, 170, 605, 771
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 167, 894
BseNI ACTGG 2 cut(s) 383, 455
BseRI GAGGAG 2 cut(s) 656, 769
BseSI GKGCMC 2 cut(s) 165, 426
BseXI GCAGC 2 cut(s) 369, 809
BsgI GTGCAG 1 cut(s) 972
BshFI GGCC 3 cut(s) 163, 424, 964
BshNI GGYRCC 1 cut(s) 812
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 7 cut(s) 116, 130, 154, 207, 599, 790, 1032
BslI CCNNNNNNNGG 4 cut(s) 77, 170, 605, 771
BsmAI GTCTC 2 cut(s) 507, 533
BsmBI CGTCTC 2 cut(s) 507, 533
BsnI GGCC 3 cut(s) 163, 424, 964
BsoBI CYCGRG 1 cut(s) 322
Bsp120I GGGCCC 2 cut(s) 161, 422
Bsp1286I GDGCHC 2 cut(s) 165, 426
Bsp143I GATC 4 cut(s) 309, 348, 363, 1126
BspACI CCGC 7 cut(s) 159, 186, 420, 606, 609, 614, 771
BspANI GGCC 3 cut(s) 163, 424, 964
BspCNI CTCAG 2 cut(s) 168, 895
BspLI GGNNCC 5 cut(s) 163, 424, 479, 520, 814
BspMI ACCTGC 1 cut(s) 913
BspPI GGATC 2 cut(s) 356, 1121
BspT107I GGYRCC 1 cut(s) 812
BsrBI CCGCTC 3 cut(s) 159, 606, 614
BsrDI GCAATG 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 2 cut(s) 383, 455
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 7 cut(s) 106, 164, 321, 390, 1030, 1042, 1130
BssMI GATC 4 cut(s) 309, 348, 363, 1126
BssNI GRCGYC 1 cut(s) 441
BssSI CACGAG 1 cut(s) 673
BssT1I CCWWGG 3 cut(s) 390, 1042, 1130
Bst2BI CACGAG 1 cut(s) 673
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 6 cut(s) 110, 141, 407, 979, 1099, 1114
BstACI GRCGYC 1 cut(s) 441
BstC8I GCNNGC 6 cut(s) 161, 422, 773, 920, 951, 1079
BstDEI CTNAG 3 cut(s) 176, 486, 903
BstDSI CCRYGG 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 3 cut(s) 17, 725, 1067
BstKTI GATC 4 cut(s) 312, 351, 366, 1129
BstMAI GTCTC 2 cut(s) 507, 533
BstMBI GATC 4 cut(s) 309, 348, 363, 1126
BstMWI GCNNNNNNNGC 1 cut(s) 928
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 922
BstSCI CCNGG 4 cut(s) 114, 164, 597, 1030
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 2 cut(s) 165, 426
BstV1I GCAGC 2 cut(s) 369, 809
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 2 cut(s) 363, 1126
BstYI RGATCY 2 cut(s) 363, 1126
BsuRI GGCC 3 cut(s) 163, 424, 964
BtgI CCRYGG 1 cut(s) 106
BtrI CACGTC 1 cut(s) 345
BtsCI GGATG 3 cut(s) 17, 725, 1067
BtsIMutI CAGTG 3 cut(s) 462, 975, 1095
BveI ACCTGC 1 cut(s) 913
Cac8I GCNNGC 6 cut(s) 161, 422, 773, 920, 951, 1079
CaiI CAGNNNCTG 1 cut(s) 803
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 5 cut(s) 161, 162, 394, 422, 423
CseI GACGC 2 cut(s) 449, 928
Csp6I GTAC 3 cut(s) 253, 376, 813
CviAII CATG 4 cut(s) 51, 469, 625, 919
CviQI GTAC 3 cut(s) 253, 376, 813
DdeI CTNAG 3 cut(s) 176, 486, 903
DpnI GATC 4 cut(s) 311, 350, 365, 1128
DpnII GATC 4 cut(s) 309, 348, 363, 1126
EciI GGCGGA 1 cut(s) 624
Eco130I CCWWGG 3 cut(s) 390, 1042, 1130
Eco147I AGGCCT 1 cut(s) 964
Eco24I GRGCYC 2 cut(s) 165, 426
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 861
Eco88I CYCGRG 1 cut(s) 322
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 162, 423
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 3 cut(s) 390, 1042, 1130
EcoT22I ATGCAT 1 cut(s) 920
EcoT38I GRGCYC 2 cut(s) 165, 426
ErhI CCWWGG 3 cut(s) 390, 1042, 1130
Esp3I CGTCTC 2 cut(s) 507, 533
FaeI CATG 4 cut(s) 54, 472, 628, 922
FatI CATG 4 cut(s) 50, 468, 624, 918
FauI CCCGC 3 cut(s) 152, 413, 764
Fnu4HI GCNGC 4 cut(s) 187, 358, 607, 798
FokI GGATG 3 cut(s) 24, 732, 1054
FriOI GRGCYC 2 cut(s) 165, 426
Fsp4HI GCNGC 4 cut(s) 187, 358, 607, 798
FspBI CTAG 4 cut(s) 27, 809, 1043, 1131
GluI GCNGC 4 cut(s) 187, 358, 607, 798
GsuI CTGGAG 2 cut(s) 45, 569
HaeIII GGCC 3 cut(s) 163, 424, 964
HapII CCGG 7 cut(s) 116, 130, 154, 207, 599, 790, 1032
HgaI GACGC 2 cut(s) 449, 928
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 4 cut(s) 54, 472, 628, 922
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 5 cut(s) 700, 872, 899, 1064, 1088
HpaII CCGG 7 cut(s) 116, 130, 154, 207, 599, 790, 1032
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 5 cut(s) 144, 253, 622, 975, 1102
Hpy188I TCNGA 8 cut(s) 268, 297, 523, 705, 805, 898, 904, 987
Hpy188III TCNNGA 5 cut(s) 62, 194, 324, 352, 367
Hpy8I GTNNAC 5 cut(s) 144, 253, 622, 975, 1102
Hpy99I CGWCG 3 cut(s) 443, 527, 770
HpyAV CCTTC 8 cut(s) 81, 100, 466, 504, 571, 829, 842, 1041
HpyCH4III ACNGT 6 cut(s) 110, 141, 407, 979, 1099, 1114
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 6 cut(s) 468, 857, 918, 922, 953, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 928
HpyF3I CTNAG 3 cut(s) 176, 486, 903
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 4 cut(s) 54, 472, 628, 922
KpnI GGTACC 1 cut(s) 816
Kzo9I GATC 4 cut(s) 309, 348, 363, 1126
LmnI GCTCC 7 cut(s) 156, 391, 504, 524, 544, 600, 611
Lsp1109I GCAGC 2 cut(s) 369, 809
LweI GCATC 1 cut(s) 905
MaeI CTAG 4 cut(s) 27, 809, 1043, 1131
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 4 cut(s) 313, 407, 1108, 1114
MalI GATC 4 cut(s) 311, 350, 365, 1128
MbiI CCGCTC 3 cut(s) 159, 606, 614
MboI GATC 4 cut(s) 309, 348, 363, 1126
MboII GAAGA 5 cut(s) 77, 814, 817, 867, 968
MflI RGATCY 2 cut(s) 363, 1126
MhlI GDGCHC 2 cut(s) 165, 426
MluCI AATT 1 cut(s) 298
MlyI GAGTC 2 cut(s) 1073, 1097
MmeI TCCRAC 3 cut(s) 358, 505, 546
Mph1103I ATGCAT 1 cut(s) 920
MroXI GAANNNNTTC 1 cut(s) 476
MseI TTAA 1 cut(s) 992
MslI CAYNNNNRTG 1 cut(s) 629
MspI CCGG 7 cut(s) 116, 130, 154, 207, 599, 790, 1032
MspR9I CCNGG 4 cut(s) 116, 166, 599, 1032
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 928
NciI CCSGG 3 cut(s) 116, 599, 1032
NdeII GATC 4 cut(s) 309, 348, 363, 1126
NlaIII CATG 4 cut(s) 54, 472, 628, 922
NlaIV GGNNCC 5 cut(s) 163, 424, 479, 520, 814
NmuCI GTSAC 1 cut(s) 1114
NsiI ATGCAT 1 cut(s) 920
NspI RCATGY 1 cut(s) 922
PaeI GCATGC 1 cut(s) 922
PceI AGGCCT 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 476
PfeI GAWTC 3 cut(s) 700, 872, 899
PfoI TCCNGGA 2 cut(s) 114, 597
PkrI GCNGC 4 cut(s) 188, 359, 608, 799
PleI GAGTC 2 cut(s) 1072, 1096
PpsI GAGTC 2 cut(s) 1072, 1096
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 5 cut(s) 163, 424, 479, 520, 814
PspOMI GGGCCC 2 cut(s) 161, 422
PspPI GGNCC 5 cut(s) 161, 162, 394, 422, 423
PstNI CAGNNNCTG 1 cut(s) 803
PsuI RGATCY 2 cut(s) 363, 1126
RsaI GTAC 3 cut(s) 254, 377, 814
RsaNI GTAC 3 cut(s) 253, 376, 813
RseI CAYNNNNRTG 1 cut(s) 629
SaqAI TTAA 1 cut(s) 992
SatI GCNGC 4 cut(s) 187, 358, 607, 798
Sau3AI GATC 4 cut(s) 309, 348, 363, 1126
Sau96I GGNCC 5 cut(s) 161, 162, 394, 422, 423
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 2 cut(s) 1073, 1097
ScrFI CCNGG 4 cut(s) 116, 166, 599, 1032
SduI GDGCHC 2 cut(s) 165, 426
SfaNI GCATC 1 cut(s) 905
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 2 cut(s) 508, 1072
SmoI CTYRAG 2 cut(s) 508, 1072
SpeI ACTAGT 1 cut(s) 26
SphI GCATGC 1 cut(s) 922
Sse9I AATT 1 cut(s) 298
SseBI AGGCCT 1 cut(s) 964
SsiI CCGC 7 cut(s) 159, 186, 420, 606, 609, 614, 771
SspI AATATT 1 cut(s) 1122
SspMI CTAG 4 cut(s) 27, 809, 1043, 1131
StuI AGGCCT 1 cut(s) 964
StyD4I CCNGG 4 cut(s) 114, 164, 597, 1030
StyI CCWWGG 3 cut(s) 390, 1042, 1130
TaaI ACNGT 6 cut(s) 110, 141, 407, 979, 1099, 1114
TaiI ACGT 1 cut(s) 347
TaqI TCGA 3 cut(s) 99, 351, 689
TasI AATT 1 cut(s) 298
TatI WGTACW 2 cut(s) 252, 375
TauI GCSGC 2 cut(s) 189, 609
TfiI GAWTC 3 cut(s) 700, 872, 899
Tru1I TTAA 1 cut(s) 992
Tru9I TTAA 1 cut(s) 992
TscAI CASTG 3 cut(s) 462, 982, 1102
TseFI GTSAC 1 cut(s) 1114
TseI GCWGC 2 cut(s) 357, 797
Tsp45I GTSAC 1 cut(s) 1114
TspDTI ATGAA 7 cut(s) 17, 215, 294, 485, 590, 861, 879
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 3 cut(s) 462, 982, 1102
VpaK11BI GGWCC 1 cut(s) 394
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 1 cut(s) 298
XceI RCATGY 1 cut(s) 922
XmaJI CCTAGG 2 cut(s) 1042, 1130
XmnI GAANNNNTTC 1 cut(s) 476
XspI CTAG 4 cut(s) 27, 809, 1043, 1131
ZrmI AGTACT 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.