Rorug04G0416100

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004100
Physical Location & Seq
Forward (+)
57743680 .. 57743907
228 bp
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UTR
Exon/CDS
Intron
Rorug04G0416100.1

Sequence Viewer

Length: 228 bp
ATGGTTTTGACTGGTAAGATAGAGACAGATGTAGAAATCAAGGCTTCTGCTCCAAAGTTTCACGAAATGTTCACCCACAAACCACACCACATTTCCAATGTCAGCTCCAACAACATTCAAGGCTGTGACTTACATGAAGGTGACTGGGGAACAGTCGGTACTATCATCTACTGGAATTACTTCTGTTTGGCTCCAAAACCAGTCTGGCGTGCAAACAATCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

75

Amino Acids

8.56

Weight (kDa)

6.48

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 3 - 62 4.2e-20 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 160
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 64, 152
BcoDI GTCTC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
Bse1I ACTGG 4 cut(s) 16, 149, 176, 200
BseNI ACTGG 4 cut(s) 16, 149, 176, 200
BsmAI GTCTC 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 192
BsrI ACTGG 4 cut(s) 16, 149, 176, 200
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 159
CviAII CATG 1 cut(s) 134
CviJI RGCY 4 cut(s) 44, 105, 123, 191
CviKI_1 RGCY 4 cut(s) 44, 105, 123, 191
CviQI GTAC 1 cut(s) 159
FaeI CATG 1 cut(s) 137
FaiI YATR 1 cut(s) 135
FatI CATG 1 cut(s) 133
Hin1II CATG 1 cut(s) 137
HphI GGTGA 2 cut(s) 64, 152
Hpy166II GTNNAC 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 212
Hsp92II CATG 1 cut(s) 137
LmnI GCTCC 3 cut(s) 55, 110, 196
LpnPI CCDG 4 cut(s) 130, 157, 190, 213
MaeIII GTNAC 2 cut(s) 125, 140
MluCI AATT 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 138
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 2 cut(s) 125, 140
PdmI GAANNNNTTC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 192
PsrI GAACNNNNNNTAC 2 cut(s) 142, 174
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 138
SetI ASST 2 cut(s) 107, 142
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 1 cut(s) 175
TaaI ACNGT 1 cut(s) 154
TasI AATT 1 cut(s) 175
TseFI GTSAC 2 cut(s) 125, 140
Tsp45I GTSAC 2 cut(s) 125, 140
TspDTI ATGAA 1 cut(s) 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.