Prupe.4G237700_v2.0.a1

Receptor-like serine threonine-protein kinase SD1-8

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
15517826 .. 15526657
8832 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G237700.1

Sequence Viewer

Length: 1623 bp
ATGTCTTCCACAATAAAAAACATAAACCCAATGACCAAATCCCATCCTCATATGCTTTCTTCACCAACAGAAACCGCCTCATTTTGTGAAACAATGAGAGCTTCAACAAAGCACCAATTCTGCTCCTCCATTCTCTGCCTCACTTTACTCACTTTCTTCCCACTTGCCACCTCCAAAGACACTTTGTCTTCCGCCCAATCCCTCCAAAACAACCAAACCCTTGTCTCCTCCGGCGGTGTCTTTGAGTTGGGCTTGTTCAAGCCCGGCGCAACTTCAGGTTGGTACTTGGGAATCTGGTACAAAAATATCCAAGAAAAAACAGTTGTTTGGGTAGCAAACAGAGACAAACCAATTTCAAATTCATCCTCAGCAACACTCAAAATTGGTGACCATGGCAACCTTGTCCTTCTTGATGGTGAAAATGGAACATGGTCCTCCAATGAAACCCAAGCCAGGAACCCAATTGTTCAGCTTTTAGATTCCGGCAATCTGGTCCTCAGAGATGGGAATTTAAACCGAAACGGCCCGAAAGACCAGTTCCTCTGGCAGAGCTTTGATTACCCAACAGACACTCTTCTGCCAGATATGAAGTTGGGGTGGAACTTAAGCTCAAACTTGGACAGGTACATAACCTCATGGAAAAGCACAGAAGACCCATCAACAGGTGACATTTCTTTCAAGCTCGACTACCGCGGTTTCCCGGAGATTTTCCTGAGAAAGAATCAGAATATAACGTACCGCAGCGGCCCCTGGAACGGGGAGAGGTTCAGCGGTGTGCCGGAGATGACACCTTCAGACGGTATCCAATTCAATTTCGTGGCCAATTCAGAAGAGGTCTACTACTCTTTTTCGGTACGTAGCAATTCAGAGTCGTTTTATTCCCGATTGATTGTGAACCCAAATGGGGAGCTTCAACGCCTGACGTGGATCGAAAGCAGAAACATTTGGAACAAATTTTGGTACGCCCCAAAAGACCAATGCGACGATTACAGCGAGTGTGGTCCGTACGGCATTTGTGACTCAAATGCTTCTCCGGTTTGCAAGTGCTTGAAGGGTTTTGAGCCCAAGAACTTGCAGACGTGGGATTTGAGGGATGGGTCTGATGGGTGCGTGAGGAAAACGCGTTTGGAGTGTTCGAAGGACAAGTTTTTGGCTCTGGGGAACATGAAGCTGGCGGAGAGCGGCGGCGCTTTTGTGGACATGAACATGAGCCTGGAGGCGTGTAAGAAAAAGTGTTTGGAGAATTGTAGTTGCACGGCGTATTCCGACGCACGGATATCAGTAGGAGAAGGCTCAGGCTGTGTCATGTGGACTGGGGACCTTTTGGACATGAGGCAATATGCAGAAGGTGGACAACATTTCTATGTGAGATTGGCCGCTTCTGAACTAGGTACCTTTTGTTATAAAACAAGAGAGAAAATGGAGAGAATTGAGATAGAGAGAAAACTGATCTGGGAAATTGGAGAGAGTCTTTTGCTCTCGCTTCTCTGTATTATTTCTCATACGTTTCTGTCTTCATATATTACAATAATTAGAATGTGGGCTCCACACCCAATAATACACTCAATAATTTACAACACTCCCCCTTGGAGACCACAAATGATATGGAATATGTCTCGTTAA

Protein Analysis

541

Amino Acids

61.12

Weight (kDa)

6.48

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1404
Acc65I GGTACC 1 cut(s) 1391
AccB1I GGYRCC 1 cut(s) 1391
AccBSI CCGCTC 1 cut(s) 1182
AccI GTMKAC 1 cut(s) 837
AccII CGCG 2 cut(s) 693, 1123
AclWI GGATC 1 cut(s) 935
AcoI YGGCCR 2 cut(s) 819, 1374
AcsI RAATTY 3 cut(s) 358, 508, 953
AcuI CTGAAG 2 cut(s) 258, 777
AfaI GTAC 8 cut(s) 284, 299, 626, 737, 855, 962, 1007, 1393
AfiI CCNNNNNNNGG 7 cut(s) 453, 662, 755, 756, 797, 904, 1272
AflII CTTAAG 1 cut(s) 604
AflIII ACRYGT 1 cut(s) 1121
AgsI TTSAA 7 cut(s) 105, 259, 357, 679, 811, 914, 1051
AhdI GACNNNNNGTC 1 cut(s) 184
AjiI CACGTC 2 cut(s) 924, 1080
AjnI CCWGG 3 cut(s) 452, 749, 1212
AjuI GAANNNNNNNTTGG 6 cut(s) 343, 375, 1109, 1141, 1220, 1252
AluBI AGCT 7 cut(s) 101, 472, 552, 609, 682, 910, 1171
AluI AGCT 7 cut(s) 101, 472, 552, 609, 682, 910, 1171
Alw26I GTCTC 3 cut(s) 229, 336, 1585
AlwI GGATC 1 cut(s) 935
AoxI GGCC 4 cut(s) 523, 745, 819, 1374
ApeKI GCWGC 1 cut(s) 741
ApoI RAATTY 3 cut(s) 358, 508, 953
ArsI GACNNNNNNTTYG 2 cut(s) 1069, 1101
Asp718I GGTACC 1 cut(s) 1391
AspLEI GCGC 2 cut(s) 269, 1190
AspS9I GGNCC 6 cut(s) 432, 493, 524, 746, 1001, 1318
AsuC2I CCSGG 2 cut(s) 264, 701
AsuHPI GGTGA 4 cut(s) 54, 398, 428, 677
AsuII TTCGAA 1 cut(s) 1136
AvaII GGWCC 4 cut(s) 432, 493, 1001, 1318
BalI TGGCCA 1 cut(s) 821
BanI GGYRCC 1 cut(s) 1391
BanII GRGCYC 2 cut(s) 1065, 1546
BbsI GAAGAC 3 cut(s) 180, 657, 1506
BbvCI CCTCAGC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 753
BccI CCATC 6 cut(s) 51, 407, 497, 664, 1088, 1097
BceAI ACGGC 3 cut(s) 538, 1024, 1272
BciT130I CCWGG 3 cut(s) 454, 751, 1214
BciVI GTATCC 1 cut(s) 812
BcnI CCSGG 2 cut(s) 264, 701
BcoDI GTCTC 3 cut(s) 229, 336, 1585
BfaI CTAG 1 cut(s) 1388
BfoI RGCGCY 1 cut(s) 1191
BfrI CTTAAG 1 cut(s) 604
BfuI GTATCC 1 cut(s) 812
BisI GCNGC 5 cut(s) 742, 745, 1183, 1186, 1377
BlsI GCNGC 5 cut(s) 743, 746, 1184, 1187, 1378
Bme1390I CCNGG 5 cut(s) 264, 454, 701, 751, 1214
Bme18I GGWCC 4 cut(s) 432, 493, 1001, 1318
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgBI CACGTC 2 cut(s) 924, 1080
BmgT120I GGNCC 6 cut(s) 432, 493, 524, 746, 1001, 1318
BmiI GGNNCC 5 cut(s) 458, 748, 1319, 1393, 1545
BmrFI CCNGG 5 cut(s) 264, 454, 701, 751, 1214
BmrI ACTGGG 1 cut(s) 1323
BmuI ACTGGG 1 cut(s) 1323
BpiI GAAGAC 3 cut(s) 180, 657, 1506
BpmI CTGGAG 1 cut(s) 1235
Bpu10I CCTNAGC 2 cut(s) 367, 1294
Bpu14I TTCGAA 1 cut(s) 1136
BpuMI CCSGG 2 cut(s) 264, 701
BsaAI YACGTR 1 cut(s) 857
BsaI GGTCTC 1 cut(s) 1585
BsaJI CCNNGG 4 cut(s) 391, 691, 749, 1586
BsaWI WCCGGW 1 cut(s) 1033
Bsc4I CCNNNNNNNGG 7 cut(s) 453, 662, 755, 756, 797, 904, 1272
Bse1I ACTGG 2 cut(s) 535, 1318
BseBI CCWGG 3 cut(s) 454, 751, 1214
BseDI CCNNGG 4 cut(s) 391, 691, 749, 1586
BseGI GGATG 3 cut(s) 43, 362, 1099
BseLI CCNNNNNNNGG 7 cut(s) 453, 662, 755, 756, 797, 904, 1272
BseMII CTCAG 4 cut(s) 381, 511, 704, 1308
BseNI ACTGG 2 cut(s) 535, 1318
BseRI GAGGAG 2 cut(s) 115, 217
BseXI GCAGC 1 cut(s) 753
Bsh1236I CGCG 2 cut(s) 693, 1123
BshFI GGCC 4 cut(s) 525, 747, 821, 1376
BshNI GGYRCC 1 cut(s) 1391
BsiSI CCGG 6 cut(s) 231, 264, 483, 701, 779, 1034
BsiWI CGTACG 1 cut(s) 1005
BslFI GGGAC 1 cut(s) 1331
BslI CCNNNNNNNGG 7 cut(s) 453, 662, 755, 756, 797, 904, 1272
BsmAI GTCTC 3 cut(s) 229, 336, 1585
BsmFI GGGAC 1 cut(s) 1331
BsnI GGCC 4 cut(s) 525, 747, 821, 1376
Bso31I GGTCTC 1 cut(s) 1585
Bsp119I TTCGAA 1 cut(s) 1136
Bsp1286I GDGCHC 2 cut(s) 1065, 1546
Bsp143I GATC 2 cut(s) 927, 1449
Bsp19I CCATGG 1 cut(s) 391
BspANI GGCC 4 cut(s) 525, 747, 821, 1376
BspCNI CTCAG 4 cut(s) 380, 510, 705, 1307
BspFNI CGCG 2 cut(s) 693, 1123
BspLI GGNNCC 5 cut(s) 458, 748, 1319, 1393, 1545
BspPI GGATC 1 cut(s) 935
BspT104I TTCGAA 1 cut(s) 1136
BspT107I GGYRCC 1 cut(s) 1391
BspTI CTTAAG 1 cut(s) 604
BspTNI GGTCTC 1 cut(s) 1585
BsrBI CCGCTC 1 cut(s) 1182
BsrI ACTGG 2 cut(s) 535, 1318
BssECI CCNNGG 4 cut(s) 391, 691, 749, 1586
BssMI GATC 2 cut(s) 927, 1449
BssT1I CCWWGG 2 cut(s) 391, 1586
Bst2UI CCWGG 3 cut(s) 454, 751, 1214
Bst4CI ACNGT 2 cut(s) 322, 800
Bst6I CTCTTC 2 cut(s) 579, 825
BstAFI CTTAAG 1 cut(s) 604
BstBAI YACGTR 1 cut(s) 857
BstBI TTCGAA 1 cut(s) 1136
BstC8I GCNNGC 1 cut(s) 1173
BstDEI CTNAG 4 cut(s) 367, 497, 713, 1294
BstDSI CCRYGG 2 cut(s) 391, 691
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 3 cut(s) 43, 362, 1099
BstFNI CGCG 2 cut(s) 693, 1123
BstH2I RGCGCY 1 cut(s) 1191
BstHHI GCGC 2 cut(s) 269, 1190
BstKTI GATC 2 cut(s) 930, 1452
BstMAI GTCTC 3 cut(s) 229, 336, 1585
BstMBI GATC 2 cut(s) 927, 1449
BstNI CCWGG 3 cut(s) 454, 751, 1214
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 5 cut(s) 262, 452, 699, 749, 1212
BstSNI TACGTA 1 cut(s) 857
BstUI CGCG 2 cut(s) 693, 1123
BstV1I GCAGC 1 cut(s) 753
BstV2I GAAGAC 3 cut(s) 180, 657, 1506
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 4 cut(s) 525, 747, 821, 1376
BtgI CCRYGG 2 cut(s) 391, 691
BtrI CACGTC 2 cut(s) 924, 1080
BtsCI GGATG 3 cut(s) 43, 362, 1099
Cac8I GCNNGC 1 cut(s) 1173
CfoI GCGC 2 cut(s) 269, 1190
Cfr13I GGNCC 6 cut(s) 432, 493, 524, 746, 1001, 1318
Cfr42I CCGCGG 1 cut(s) 694
CseI GACGC 1 cut(s) 1277
Csp6I GTAC 8 cut(s) 283, 298, 625, 736, 854, 961, 1006, 1392
CviAII CATG 8 cut(s) 392, 429, 636, 1165, 1201, 1207, 1306, 1330
CviQI GTAC 8 cut(s) 283, 298, 625, 736, 854, 961, 1006, 1392
DdeI CTNAG 4 cut(s) 367, 497, 713, 1294
DpnI GATC 2 cut(s) 929, 1451
DpnII GATC 2 cut(s) 927, 1449
DraI TTTAAA 1 cut(s) 513
DriI GACNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 2 cut(s) 819, 1374
Eam1104I CTCTTC 2 cut(s) 579, 825
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 2 cut(s) 579, 825
EciI GGCGGA 2 cut(s) 181, 1190
Eco105I TACGTA 1 cut(s) 857
Eco130I CCWWGG 2 cut(s) 391, 1586
Eco24I GRGCYC 2 cut(s) 1065, 1546
Eco31I GGTCTC 1 cut(s) 1585
Eco32I GATATC 1 cut(s) 1278
Eco47I GGWCC 4 cut(s) 432, 493, 1001, 1318
Eco57I CTGAAG 2 cut(s) 258, 777
Eco91I GGTNACC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 1318
EcoO65I GGTNACC 1 cut(s) 386
EcoRII CCWGG 3 cut(s) 452, 749, 1212
EcoRV GATATC 1 cut(s) 1278
EcoT14I CCWWGG 2 cut(s) 391, 1586
EcoT38I GRGCYC 2 cut(s) 1065, 1546
ErhI CCWWGG 2 cut(s) 391, 1586
FaeI CATG 8 cut(s) 395, 432, 639, 1168, 1204, 1210, 1309, 1333
FaqI GGGAC 1 cut(s) 1331
FatI CATG 8 cut(s) 391, 428, 635, 1164, 1200, 1206, 1305, 1329
FauNDI CATATG 1 cut(s) 51
FblI GTMKAC 1 cut(s) 837
Fnu4HI GCNGC 5 cut(s) 742, 745, 1183, 1186, 1377
FokI GGATG 3 cut(s) 30, 349, 1106
FriOI GRGCYC 2 cut(s) 1065, 1546
Fsp4HI GCNGC 5 cut(s) 742, 745, 1183, 1186, 1377
FspBI CTAG 1 cut(s) 1388
GlaI GCGC 2 cut(s) 268, 1189
GluI GCNGC 5 cut(s) 742, 745, 1183, 1186, 1377
GsuI CTGGAG 1 cut(s) 1235
HaeII RGCGCY 1 cut(s) 1191
HaeIII GGCC 4 cut(s) 525, 747, 821, 1376
HapII CCGG 6 cut(s) 231, 264, 483, 701, 779, 1034
HgaI GACGC 1 cut(s) 1277
HhaI GCGC 2 cut(s) 269, 1190
Hin1II CATG 8 cut(s) 395, 432, 639, 1168, 1204, 1210, 1309, 1333
Hin6I GCGC 2 cut(s) 267, 1188
HinP1I GCGC 2 cut(s) 267, 1188
HinfI GANTC 6 cut(s) 291, 479, 721, 869, 1019, 1468
HpaII CCGG 6 cut(s) 231, 264, 483, 701, 779, 1034
HphI GGTGA 4 cut(s) 54, 398, 428, 677
Hpy166II GTNNAC 5 cut(s) 838, 895, 1198, 1311, 1352
Hpy188I TCNGA 8 cut(s) 500, 726, 796, 829, 868, 1102, 1267, 1384
Hpy188III TCNNGA 3 cut(s) 410, 712, 882
Hpy8I GTNNAC 5 cut(s) 838, 895, 1198, 1311, 1352
Hpy99I CGWCG 2 cut(s) 986, 1271
HpyAV CCTTC 6 cut(s) 416, 801, 1045, 1132, 1283, 1340
HpyCH4III ACNGT 2 cut(s) 322, 800
HpyCH4IV ACGT 5 cut(s) 734, 856, 923, 1079, 1505
HpyCH4V TGCA 4 cut(s) 1041, 1075, 1254, 1343
HpyF3I CTNAG 4 cut(s) 367, 497, 713, 1294
HpySE526I ACGT 5 cut(s) 734, 856, 923, 1079, 1505
Hsp92II CATG 8 cut(s) 395, 432, 639, 1168, 1204, 1210, 1309, 1333
HspAI GCGC 2 cut(s) 267, 1188
KpnI GGTACC 1 cut(s) 1395
KspI CCGCGG 1 cut(s) 694
Kzo9I GATC 2 cut(s) 927, 1449
LmnI GCTCC 3 cut(s) 128, 907, 1549
Lsp1109I GCAGC 1 cut(s) 753
MaeI CTAG 1 cut(s) 1388
MaeII ACGT 5 cut(s) 734, 856, 923, 1079, 1505
MaeIII GTNAC 3 cut(s) 386, 665, 1016
MalI GATC 2 cut(s) 929, 1451
MbiI CCGCTC 1 cut(s) 1182
MboI GATC 2 cut(s) 927, 1449
MboII GAAGA 7 cut(s) 51, 148, 180, 566, 662, 842, 1506
MfeI CAATTG 1 cut(s) 462
MhlI GDGCHC 2 cut(s) 1065, 1546
MlsI TGGCCA 1 cut(s) 821
MluI ACGCGT 1 cut(s) 1121
MluNI TGGCCA 1 cut(s) 821
MlyI GAGTC 3 cut(s) 878, 1013, 1477
MmeI TCCRAC 1 cut(s) 1290
Mox20I TGGCCA 1 cut(s) 821
MscI TGGCCA 1 cut(s) 821
MseI TTAA 3 cut(s) 512, 605, 1621
MslI CAYNNNNRTG 2 cut(s) 1205, 1362
Msp20I TGGCCA 1 cut(s) 821
MspA1I CMGCKG 3 cut(s) 693, 744, 771
MspCI CTTAAG 1 cut(s) 604
MspI CCGG 6 cut(s) 231, 264, 483, 701, 779, 1034
MspR9I CCNGG 5 cut(s) 264, 454, 701, 751, 1214
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 3 cut(s) 454, 751, 1214
MvnI CGCG 2 cut(s) 693, 1123
NciI CCSGG 2 cut(s) 264, 701
NcoI CCATGG 1 cut(s) 391
NdeI CATATG 1 cut(s) 51
NdeII GATC 2 cut(s) 927, 1449
NlaIII CATG 8 cut(s) 395, 432, 639, 1168, 1204, 1210, 1309, 1333
NlaIV GGNNCC 5 cut(s) 458, 748, 1319, 1393, 1545
NmuCI GTSAC 3 cut(s) 386, 665, 1016
NspV TTCGAA 1 cut(s) 1136
PcsI WCGNNNNNNNCGW 1 cut(s) 990
PfeI GAWTC 3 cut(s) 291, 479, 721
Pfl23II CGTACG 1 cut(s) 1005
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 5 cut(s) 743, 746, 1184, 1187, 1378
PleI GAGTC 3 cut(s) 877, 1013, 1476
PpsI GAGTC 3 cut(s) 877, 1013, 1476
Ppu21I YACGTR 1 cut(s) 857
PpuMI RGGWCCY 1 cut(s) 1318
PsiI TTATAA 1 cut(s) 1404
Psp5II RGGWCCY 1 cut(s) 1318
Psp6I CCWGG 3 cut(s) 452, 749, 1212
PspEI GGTNACC 1 cut(s) 386
PspGI CCWGG 3 cut(s) 452, 749, 1212
PspLI CGTACG 1 cut(s) 1005
PspN4I GGNNCC 5 cut(s) 458, 748, 1319, 1393, 1545
PspPI GGNCC 6 cut(s) 432, 493, 524, 746, 1001, 1318
PspPPI RGGWCCY 1 cut(s) 1318
RsaI GTAC 8 cut(s) 284, 299, 626, 737, 855, 962, 1007, 1393
RsaNI GTAC 8 cut(s) 283, 298, 625, 736, 854, 961, 1006, 1392
RseI CAYNNNNRTG 2 cut(s) 1205, 1362
SacII CCGCGG 1 cut(s) 694
SaqAI TTAA 3 cut(s) 512, 605, 1621
SatI GCNGC 5 cut(s) 742, 745, 1183, 1186, 1377
Sau3AI GATC 2 cut(s) 927, 1449
Sau96I GGNCC 6 cut(s) 432, 493, 524, 746, 1001, 1318
SchI GAGTC 3 cut(s) 878, 1013, 1477
ScrFI CCNGG 5 cut(s) 264, 454, 701, 751, 1214
SduI GDGCHC 2 cut(s) 1065, 1546
Sfr303I CCGCGG 1 cut(s) 694
SfuI TTCGAA 1 cut(s) 1136
SgrBI CCGCGG 1 cut(s) 694
SinI GGWCC 4 cut(s) 432, 493, 1001, 1318
SmiMI CAYNNNNRTG 2 cut(s) 1205, 1362
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
SnaBI TACGTA 1 cut(s) 857
SspMI CTAG 1 cut(s) 1388
StyD4I CCNGG 5 cut(s) 262, 452, 699, 749, 1212
StyI CCWWGG 2 cut(s) 391, 1586
TaaI ACNGT 2 cut(s) 322, 800
TaiI ACGT 5 cut(s) 737, 859, 926, 1082, 1508
TaqI TCGA 3 cut(s) 684, 930, 1136
TauI GCSGC 4 cut(s) 747, 1185, 1188, 1379
TfiI GAWTC 3 cut(s) 291, 479, 721
Tru1I TTAA 3 cut(s) 512, 605, 1621
Tru9I TTAA 3 cut(s) 512, 605, 1621
TseFI GTSAC 3 cut(s) 386, 665, 1016
TseI GCWGC 1 cut(s) 741
Tsp45I GTSAC 3 cut(s) 386, 665, 1016
TspDTI ATGAA 6 cut(s) 351, 456, 602, 1181, 1217, 1506
TspGWI ACGGA 2 cut(s) 993, 1288
Vha464I CTTAAG 1 cut(s) 604
VpaK11BI GGWCC 4 cut(s) 432, 493, 1001, 1318
XapI RAATTY 3 cut(s) 358, 508, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 1602
XmiI GTMKAC 1 cut(s) 837
XspI CTAG 1 cut(s) 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.