Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004100

Physical Location & Seq

Genomic Coordinates Reverse (-)

80912394 .. 80913386

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG521200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCAAGCAATCAATCACAATTTGTTAAAAATCCAATCCTTCAGCTTTTGGATTCCGGCAACTTGGTCCTCAAAGAAGCAAATGAAACCAACCCTAACGAGTTCCTCTGGCAGAGCTTCGACTACCCTACACACACTTTGTTGCCGGAGATGAAGCTCGGAAGGAACTCGAATACCGGATTGGATAGATACATAACCTCGTGGAAAACTCCACAAGACCCTTCTACTGGTGATTACTCCTTCAAGCTCGACTACCGCGGTTTCCCGGAGGCTTTCCTCCGGCAGAGACAGTCGATAAAGTACCGGAGCGGCCCCTGGAACGGGTTGAGATTTAGCGGGGCTCCGGAGATGAACACCGCTAGCTCTAATGGTATTGGTTTCAACTTCGTTGTAAACAATGAGGAGATGTACTACTCTTTTTCGGAAACTAATCCAGCTCTGTATTCACGGCTGATTGTATCTCCCTCCGGCAACATCCAACGGCTGACGTGGATCGAGAGCCGCAAGACCTGGAGCCAGTGCTGGTACCTTCCCAGGGACCCATGCGACACGTACAGTGAGTGCGGGCCCTATGGTGTCTGCGACGCCAACGATGCTTTGCCGGTGTGTAAGTGCATGAGGGGCTTCCGACCTAAGAACCCTTCTGCATGGAGCTTGAGAGATGGCACCGAAGGATGTGAACGTGAGACGGAGCTGGAGTGTGGGAGTAAGGACAAGTTTATGAAGGTGGAGAATTTGAAGCTGCCGGAGAGCGGGAGAGCGGTGGTGGATATGGAGATGAGTTTGAAGGAGTGTGAGGTGAAGTGTTTGGGGAATTGCTCGTGTAGTGGGTTTTCGAGTGCGAGGATTGAGAAAGGAGGGAGTGGATGTGTGATGTGGTTTGGGAAGTTGATGGATATGAGGAGTTATGCCGGCGACAGCGGCCAAGAGTTCTATCTCCGATTAGCAGCTTCTGAACTAGGTACGTACCACCTTCTTCTTCTTACCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

330

Amino Acids

37.34

Weight (kDa)

5.91

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	3 - 69	2.6e-21	D-mannose binding lectin
S_locus_glycop	PF00954	101 - 213	2.6e-34	S-locus glycoprotein domain
PAN_2	PF08276	234 - 300	8.7e-21	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65790 AT1G65790 AT1G65790 AT1G65800 AT1G65800 AT4G21380 AT4G21380 AT5G39370
fragaria_vesca	FvH4_3g03430
malus_domestica	MD02G1167300.v1.1 MD03G1187400.v1.1
prunus_persica	Prupe.4G032300_v2.0.a1 Prupe.4G237700_v2.0.a1 Prupe.4G251300_v2.0.a1
pyrus_communis	pycom03g14020
rosa_chinensis	RchiOBHm_Chr5g0005211 RchiOBHm_Chr5g0074281
rosa_laevigata	RLG00000031300 RLG00000036463
rosa_multiflora	Rmu_co7992028.1_g000001 Rmu_sc0004706.1_g000005 Rmu_sc0014528.1_g000001 Rmu_sc0028767.1_g000001 Rmu_sc0028768.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007200 Rroxscaffold_1G00070460
rosa_rugosa	Rorug04G0416100 Rorug05G0429800
rosa_samantha	Rh5AG487600 Rh5CG048800 Rh5CG531400 Rh5DG521200
rosa_wichuraiana	Rw5G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	2 cut(s)	525, 665
AccBSI	CCGCTC	3 cut(s)	309, 753, 761
AccII	CGCG	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	343
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	922
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	6 cut(s)	302, 410, 527, 554, 964, 968
AfiI	CCNNNNNNNGG	5 cut(s)	227, 320, 321, 535, 752
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	4 cut(s)	244, 382, 739, 787
AjiI	CACGTC	1 cut(s)	489
AjnI	CCWGG	4 cut(s)	314, 509, 533, 986
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
Alw26I	GTCTC	2 cut(s)	280, 680
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	1 cut(s)	953
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	3 cut(s)	310, 566, 922
ApaI	GGGCCC	1 cut(s)	570
ApeKI	GCWGC	2 cut(s)	742, 947
ApoI	RAATTY	1 cut(s)	733
Asp718I	GGTACC	1 cut(s)	525
AspS9I	GGNCC	5 cut(s)	67, 311, 538, 566, 567
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	242, 811
AsuNHI	GCTAGC	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	67, 538
BaeGI	GKGCMC	1 cut(s)	570
BanI	GGYRCC	2 cut(s)	525, 665
BanII	GRGCYC	2 cut(s)	343, 570
BauI	CACGAG	2 cut(s)	199, 820
BbvI	GCAGC	2 cut(s)	729, 959
BccI	CCATC	2 cut(s)	656, 886
BceAI	ACGGC	2 cut(s)	464, 497
BciT130I	CCWGG	4 cut(s)	316, 511, 535, 988
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	280, 680
BfaI	CTAG	2 cut(s)	360, 959
BisI	GCNGC	5 cut(s)	310, 502, 743, 922, 948
BlsI	GCNGC	5 cut(s)	311, 503, 744, 923, 949
Bme1390I	CCNGG	5 cut(s)	266, 316, 511, 535, 988
Bme18I	GGWCC	2 cut(s)	67, 538
BmgBI	CACGTC	1 cut(s)	489
BmgT120I	GGNCC	5 cut(s)	67, 311, 538, 566, 567
BmiI	GGNNCC	8 cut(s)	313, 342, 515, 527, 539, 540, 568, 667
BmrFI	CCNGG	5 cut(s)	266, 316, 511, 535, 988
BmsI	GCATC	1 cut(s)	583
BmtI	GCTAGC	1 cut(s)	363
BpmI	CTGGAG	2 cut(s)	532, 716
BpuEI	CTTGAG	1 cut(s)	676
BpuMI	CCSGG	1 cut(s)	266
BsaAI	YACGTR	2 cut(s)	552, 966
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	4 cut(s)	256, 314, 533, 534
BsaWI	WCCGGW	3 cut(s)	176, 303, 343
BsaXI	ACNNNNNCTCC	4 cut(s)	683, 713, 853, 883
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 320, 321, 535, 752
Bse118I	RCCGGY	2 cut(s)	601, 911
Bse1I	ACTGG	2 cut(s)	232, 517
BseAI	TCCGGA	1 cut(s)	343
BseBI	CCWGG	4 cut(s)	316, 511, 535, 988
BseDI	CCNNGG	4 cut(s)	256, 314, 533, 534
BseGI	GGATG	3 cut(s)	474, 680, 872
BseLI	CCNNNNNNNGG	5 cut(s)	227, 320, 321, 535, 752
BseNI	ACTGG	2 cut(s)	232, 517
BseRI	GAGGAG	2 cut(s)	416, 916
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	2 cut(s)	729, 959
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	312, 568, 924
BshNI	GGYRCC	2 cut(s)	525, 665
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	5 cut(s)	227, 320, 321, 535, 752
BsmAI	GTCTC	2 cut(s)	280, 680
BsmBI	CGTCTC	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	3 cut(s)	312, 568, 924
Bsp120I	GGGCCC	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	343, 570
Bsp13I	TCCGGA	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	492
BspANI	GGCC	3 cut(s)	312, 568, 924
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	8 cut(s)	313, 342, 515, 527, 539, 540, 568, 667
BspOI	GCTAGC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	525, 665
BsrBI	CCGCTC	3 cut(s)	309, 753, 761
BsrFI	RCCGGY	2 cut(s)	601, 911
BsrI	ACTGG	2 cut(s)	232, 517
BssAI	RCCGGY	2 cut(s)	601, 911
BssECI	CCNNGG	4 cut(s)	256, 314, 533, 534
BssMI	GATC	1 cut(s)	492
BssNI	GRCGYC	1 cut(s)	585
BssSI	CACGAG	2 cut(s)	199, 820
Bst2BI	CACGAG	2 cut(s)	199, 820
Bst2UI	CCWGG	4 cut(s)	316, 511, 535, 988
Bst4CI	ACNGT	2 cut(s)	291, 557
BstACI	GRCGYC	1 cut(s)	585
BstBAI	YACGTR	2 cut(s)	552, 966
BstC8I	GCNNGC	3 cut(s)	361, 566, 913
BstDEI	CTNAG	1 cut(s)	633
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	3 cut(s)	474, 680, 872
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	495
BstMAI	GTCTC	2 cut(s)	280, 680
BstMBI	GATC	1 cut(s)	492
BstMWI	GCNNNNNNNGC	3 cut(s)	593, 621, 921
BstNI	CCWGG	4 cut(s)	316, 511, 535, 988
BstSCI	CCNGG	5 cut(s)	264, 314, 509, 533, 986
BstSLI	GKGCMC	1 cut(s)	570
BstSNI	TACGTA	1 cut(s)	966
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	729, 959
BsuRI	GGCC	3 cut(s)	312, 568, 924
BtgI	CCRYGG	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	474, 680, 872
BtsIMutI	CAGTG	2 cut(s)	524, 562
Cac8I	GCNNGC	3 cut(s)	361, 566, 913
CaiI	CAGNNNCTG	1 cut(s)	953
Cfr10I	RCCGGY	2 cut(s)	601, 911
Cfr13I	GGNCC	5 cut(s)	67, 311, 538, 566, 567
Cfr42I	CCGCGG	1 cut(s)	259
CseI	GACGC	1 cut(s)	593
CsiI	ACCWGGT	1 cut(s)	986
Csp6I	GTAC	6 cut(s)	301, 409, 526, 553, 963, 967
CviAII	CATG	3 cut(s)	543, 616, 648
CviQI	GTAC	6 cut(s)	301, 409, 526, 553, 963, 967
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	1 cut(s)	494
DpnII	GATC	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	922
Eco105I	TACGTA	1 cut(s)	966
Eco24I	GRGCYC	2 cut(s)	343, 570
Eco47I	GGWCC	2 cut(s)	67, 538
Eco57I	CTGAAG	1 cut(s)	26
EcoO109I	RGGNCCY	2 cut(s)	538, 567
EcoRII	CCWGG	4 cut(s)	314, 509, 533, 986
EcoT38I	GRGCYC	2 cut(s)	343, 570
Esp3I	CGTCTC	1 cut(s)	680
FaeI	CATG	3 cut(s)	546, 619, 651
FaiI	YATR	9 cut(s)	194, 544, 573, 617, 649, 722, 773, 899, 909
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	3 cut(s)	542, 615, 647
FauI	CCCGC	3 cut(s)	329, 557, 746
Fnu4HI	GCNGC	5 cut(s)	310, 502, 743, 922, 948
FokI	GGATG	3 cut(s)	461, 687, 879
FriOI	GRGCYC	2 cut(s)	343, 570
Fsp4HI	GCNGC	5 cut(s)	310, 502, 743, 922, 948
FspBI	CTAG	2 cut(s)	360, 959
GluI	GCNGC	5 cut(s)	310, 502, 743, 922, 948
GsuI	CTGGAG	2 cut(s)	532, 716
HaeIII	GGCC	3 cut(s)	312, 568, 924
HgaI	GACGC	1 cut(s)	593
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	3 cut(s)	546, 619, 651
HinfI	GANTC	1 cut(s)	53
HphI	GGTGA	2 cut(s)	242, 811
Hpy166II	GTNNAC	2 cut(s)	394, 680
Hpy188I	TCNGA	5 cut(s)	161, 424, 629, 941, 955
Hpy188III	TCNNGA	2 cut(s)	344, 496
Hpy8I	GTNNAC	2 cut(s)	394, 680
Hpy99I	CGWCG	1 cut(s)	587
HpyCH4III	ACNGT	2 cut(s)	291, 557
HpyCH4IV	ACGT	4 cut(s)	488, 551, 682, 965
HpyCH4V	TGCA	2 cut(s)	615, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	593, 621, 921
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	4 cut(s)	488, 551, 682, 965
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	546, 619, 651
KflI	GGGWCCC	1 cut(s)	538
Kpn2I	TCCGGA	1 cut(s)	343
KpnI	GGTACC	1 cut(s)	529
KroI	GCCGGC	1 cut(s)	911
KroNI	GCCGGC	1 cut(s)	913
KspI	CCGCGG	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	492
LmnI	GCTCC	5 cut(s)	306, 346, 513, 651, 691
Lsp1109I	GCAGC	2 cut(s)	729, 959
LweI	GCATC	1 cut(s)	583
MabI	ACCWGGT	1 cut(s)	986
MaeI	CTAG	2 cut(s)	360, 959
MaeII	ACGT	4 cut(s)	488, 551, 682, 965
MalI	GATC	1 cut(s)	494
MbiI	CCGCTC	3 cut(s)	309, 753, 761
MboI	GATC	1 cut(s)	492
MboII	GAAGA	2 cut(s)	968, 971
MhlI	GDGCHC	2 cut(s)	343, 570
MluCI	AATT	3 cut(s)	20, 733, 814
MmeI	TCCRAC	2 cut(s)	502, 652
MroI	TCCGGA	1 cut(s)	343
MroNI	GCCGGC	1 cut(s)	911
MseI	TTAA	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	258, 921
MspR9I	CCNGG	5 cut(s)	266, 316, 511, 535, 988
MvaI	CCWGG	4 cut(s)	316, 511, 535, 988
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	593, 621, 921
NaeI	GCCGGC	1 cut(s)	913
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	492
NgoMIV	GCCGGC	1 cut(s)	911
NheI	GCTAGC	1 cut(s)	359
NlaIII	CATG	3 cut(s)	546, 619, 651
NlaIV	GGNNCC	8 cut(s)	313, 342, 515, 527, 539, 540, 568, 667
PasI	CCCWGGG	1 cut(s)	534
PdiI	GCCGGC	1 cut(s)	913
PfeI	GAWTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	5 cut(s)	311, 503, 744, 923, 949
Ppu21I	YACGTR	2 cut(s)	552, 966
PpuMI	RGGWCCY	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	4 cut(s)	314, 509, 533, 986
PspGI	CCWGG	4 cut(s)	314, 509, 533, 986
PspN4I	GGNNCC	8 cut(s)	313, 342, 515, 527, 539, 540, 568, 667
PspOMI	GGGCCC	1 cut(s)	566
PspPI	GGNCC	5 cut(s)	67, 311, 538, 566, 567
PspPPI	RGGWCCY	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	953
RsaI	GTAC	6 cut(s)	302, 410, 527, 554, 964, 968
RsaNI	GTAC	6 cut(s)	301, 409, 526, 553, 963, 967
SacII	CCGCGG	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	5 cut(s)	310, 502, 743, 922, 948
Sau3AI	GATC	1 cut(s)	492
Sau96I	GGNCC	5 cut(s)	67, 311, 538, 566, 567
ScrFI	CCNGG	5 cut(s)	266, 316, 511, 535, 988
SduI	GDGCHC	2 cut(s)	343, 570
SexAI	ACCWGGT	1 cut(s)	986
SfaNI	GCATC	1 cut(s)	583
Sfr303I	CCGCGG	1 cut(s)	259
SgrBI	CCGCGG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	67, 538
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
SnaBI	TACGTA	1 cut(s)	966
Sse9I	AATT	3 cut(s)	20, 733, 814
SspMI	CTAG	2 cut(s)	360, 959
StyD4I	CCNGG	5 cut(s)	264, 314, 509, 533, 986
TaaI	ACNGT	2 cut(s)	291, 557
TaiI	ACGT	4 cut(s)	491, 554, 685, 968
TaqI	TCGA	6 cut(s)	120, 170, 249, 293, 495, 836
TasI	AATT	3 cut(s)	20, 733, 814
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	3 cut(s)	312, 504, 924
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	524, 562
TseI	GCWGC	2 cut(s)	742, 947
TspDTI	ATGAA	4 cut(s)	99, 167, 365, 737
TspGWI	ACGGA	1 cut(s)	704
TspRI	CASTG	2 cut(s)	524, 562
VpaK11BI	GGWCC	2 cut(s)	67, 538
XapI	RAATTY	1 cut(s)	733
XspI	CTAG	2 cut(s)	360, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.