Rh5DG521300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008578
Physical Location & Seq
Reverse (-)
80922626 .. 80923996
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG521300.1

Sequence Viewer

Length: 1371 bp
ATGCAGTCTTTATCTATAAAGATTCGATGGAGAGGTGTAGGTGCAAATCCTTTACAGCCATTTCAATTCTTCCTGCCTAAAACTCTCAAAAGCATCAAGTTGCAGCCTGTGGTTGAGGAAGACGTAATCTATTTCACTAGTTTGAATGATGCATTTAAGAACTATTTGCCAACAGCTAATGTCAGCACCCCTGTTTCTAAATCCTCATTTGGATTCGCATTGCAGCGCTTGTCGCTTGTCTTAGATGTTATATCAGATCAGCTAATTGTTGTCATTGGCATTTGTGACAATTTGGTAGAGCTGGATCTTGAAGATAGACTAATTCAGGAACCATTGCCAAACCATGACTTAACCAGCGTGGGGCTTATGAGTCTGGCCTCTAATTTTCGTTTGAAGGGATTGTCTCTTGTAAGAAGTAGACAGAACTGCCAAGTCTCGTTTAAGGGAGTGGATGATATTGGCATGTTTGTTTTTTCTAAGTACTGCACGACTCTAGAGTCGGTTAGACTTTATGGGTTCTCCAAAGTTAGTGACGCAGGCTATGCATCAGTCCTACAATCATATCAAAATTTGAAGAAATTCGAAGTGCGTAATGCCTTCCTTATGTCAGACTTGGCCTTTGTTGACCTTACTCGGTTCTCATGTTCTCTTGTTGAGGTGAAATTGTTGTCATGCTGTCTTATAACTTGTGAAACGGTAAATCAGCTCTCCAGTTCTGGGGTCCTGGAGGTGCTTGATCTGAATGGCTGTAGGAGCATAGCAGACTCCTGCCTCATCTCCATTGCATCGCTTCATAGCTTAACCATGCTGAATCTTTCAGGAGCTGATATTTCTGATTACGGCTTATCTGTTCTTGGGACGGGGAATCCACCCATCACACATTTGTGTCTTAGAAACTGTAAGGATGTGACTGATGAAGGAGTTTTACTTTTGTTTCTTGGAGGAGGCACAATTGGCAAAACACTGTCATCCCTCGATTTAGGACACATACCAGGAATATCTGATAAAGCAGTTCTCACAATTGCTGTGGCCGGTAGACAGATTACTGAGTTGTGTCTCAGGTATTGCTCCTCTATGACTAATTCGTCCCTAGAAGCTTTGGCTACAAGGAAACAGGATCGAGATGATTGTAAACTACTACGGAGGCTTGATCTTTTCAATTGCAAGGGTTTGTCTGCTGACTCATTTAGGTTGCTGAAGAGGCCTTTCTTCCCCGGACTGCACTGGGTTGGTATGGGGAATACTCGTTTGAATAGTAAAGGATGTCCAGCTCTCAGTGAAATTGGTTACAAAAGACCATGGCTGACGATATGTTTGGATGGCTGTGAAATGGGTTGTCATGATGGATGGCAATTCCATAGAGTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_6

Protein Analysis

456

Amino Acids

50.2

Weight (kDa)

7.78

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 2 - 448 9.1e-147 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 683
AasI GACNNNNNNGTC 2 cut(s) 496, 1084
AccI GTMKAC 2 cut(s) 418, 1036
AclWI GGATC 2 cut(s) 312, 1125
AcoI YGGCCR 1 cut(s) 1029
AcsI RAATTY 2 cut(s) 568, 578
AcuI CTGAAG 1 cut(s) 1217
AfaI GTAC 1 cut(s) 482
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 360, 717
AgsI TTSAA 7 cut(s) 65, 145, 311, 394, 574, 1159, 1252
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 2 cut(s) 723, 991
AleI CACNNNNGTG 1 cut(s) 883
AluBI AGCT 8 cut(s) 176, 262, 301, 706, 798, 824, 1097, 1271
AluI AGCT 8 cut(s) 176, 262, 301, 706, 798, 824, 1097, 1271
Alw26I GTCTC 3 cut(s) 408, 439, 1061
AlwI GGATC 2 cut(s) 312, 1125
AlwNI CAGNNNCTG 1 cut(s) 824
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 4 cut(s) 375, 615, 1029, 1202
ApeKI GCWGC 2 cut(s) 103, 223
ApoI RAATTY 2 cut(s) 568, 578
ArsI GACNNNNNNTTYG 4 cut(s) 602, 634, 1297, 1329
Asp700I GAANNNNTTC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 721
AsuC2I CCSGG 1 cut(s) 1215
AsuHPI GGTGA 1 cut(s) 670
AsuII TTCGAA 1 cut(s) 582
AvaII GGWCC 1 cut(s) 721
BarI GAAGNNNNNNTAC 2 cut(s) 909, 941
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 115, 235
BccI CCATC 5 cut(s) 21, 881, 1313, 1337, 1341
BceAI ACGGC 1 cut(s) 856
BciT130I CCWGG 2 cut(s) 725, 993
BcnI CCSGG 1 cut(s) 1215
BcoDI GTCTC 3 cut(s) 408, 439, 1061
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 3 cut(s) 138, 494, 1091
BfmI CTRYAG 1 cut(s) 748
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 2 cut(s) 104, 224
BlsI GCNGC 2 cut(s) 105, 225
BmcAI AGTACT 1 cut(s) 482
Bme1390I CCNGG 3 cut(s) 725, 993, 1215
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 721
BmiI GGNNCC 2 cut(s) 330, 722
BmrFI CCNGG 3 cut(s) 725, 993, 1215
BmrI ACTGGG 1 cut(s) 1234
BmsI GCATC 4 cut(s) 102, 139, 554, 794
BmuI ACTGGG 1 cut(s) 1234
BpiI GAAGAC 1 cut(s) 126
BpmI CTGGAG 2 cut(s) 694, 746
Bpu14I TTCGAA 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 1215
BsaJI CCNNGG 2 cut(s) 1213, 1298
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 717
Bse118I RCCGGY 1 cut(s) 1031
Bse1I ACTGG 2 cut(s) 711, 1229
Bse3DI GCAATG 3 cut(s) 218, 332, 780
BseBI CCWGG 2 cut(s) 725, 993
BseDI CCNNGG 2 cut(s) 1213, 1298
BseGI GGATG 6 cut(s) 457, 910, 968, 1268, 1324, 1352
BseLI CCNNNNNNNGG 2 cut(s) 360, 717
BseMI GCAATG 3 cut(s) 218, 332, 780
BseMII CTCAG 3 cut(s) 1038, 1072, 1288
BseNI ACTGG 2 cut(s) 711, 1229
BseRI GAGGAG 2 cut(s) 957, 1060
BseXI GCAGC 2 cut(s) 115, 235
BsgI GTGCAG 2 cut(s) 469, 1205
BshFI GGCC 4 cut(s) 377, 617, 1031, 1204
BsiSI CCGG 2 cut(s) 1032, 1215
BslFI GGGAC 2 cut(s) 871, 1072
BslI CCNNNNNNNGG 2 cut(s) 360, 717
BsmAI GTCTC 3 cut(s) 408, 439, 1061
BsmFI GGGAC 2 cut(s) 871, 1072
BsnI GGCC 4 cut(s) 377, 617, 1031, 1204
Bsp119I TTCGAA 1 cut(s) 582
Bsp143I GATC 5 cut(s) 256, 304, 736, 1117, 1150
Bsp19I CCATGG 1 cut(s) 1298
BspANI GGCC 4 cut(s) 377, 617, 1031, 1204
BspCNI CTCAG 3 cut(s) 1039, 1071, 1287
BspHI TCATGA 1 cut(s) 1339
BspLI GGNNCC 2 cut(s) 330, 722
BspPI GGATC 2 cut(s) 312, 1125
BspT104I TTCGAA 1 cut(s) 582
BsrDI GCAATG 3 cut(s) 218, 332, 780
BsrFI RCCGGY 1 cut(s) 1031
BsrI ACTGG 2 cut(s) 711, 1229
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 2 cut(s) 1213, 1298
BssMI GATC 5 cut(s) 256, 304, 736, 1117, 1150
BssT1I CCWWGG 1 cut(s) 1298
Bst2UI CCWGG 2 cut(s) 725, 993
Bst4CI ACNGT 3 cut(s) 697, 899, 966
Bst6I CTCTTC 1 cut(s) 1193
BstAPI GCANNNNNTGC 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 6 cut(s) 241, 477, 890, 1047, 1058, 1274
BstDSI CCRYGG 1 cut(s) 1298
BstF5I GGATG 6 cut(s) 457, 910, 968, 1268, 1324, 1352
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 5 cut(s) 259, 307, 739, 1120, 1153
BstMAI GTCTC 3 cut(s) 408, 439, 1061
BstMBI GATC 5 cut(s) 256, 304, 736, 1117, 1150
BstMWI GCNNNNNNNGC 5 cut(s) 232, 542, 753, 954, 1201
BstNI CCWGG 2 cut(s) 725, 993
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 3 cut(s) 723, 991, 1213
BstSFI CTRYAG 1 cut(s) 748
BstV1I GCAGC 2 cut(s) 115, 235
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 4 cut(s) 377, 617, 1031, 1204
BtgI CCRYGG 1 cut(s) 1298
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 6 cut(s) 457, 910, 968, 1268, 1324, 1352
BtsIMutI CAGTG 3 cut(s) 962, 1222, 1282
Cac8I GCNNGC 1 cut(s) 538
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 1 cut(s) 1339
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 1031
Cfr13I GGNCC 1 cut(s) 721
CseI GACGC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 481
CspCI CAANNNNNGTGG 2 cut(s) 1008, 1043
CviAII CATG 7 cut(s) 344, 463, 642, 672, 805, 1299, 1340
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 6 cut(s) 241, 477, 890, 1047, 1058, 1274
DpnI GATC 5 cut(s) 258, 306, 738, 1119, 1152
DpnII GATC 5 cut(s) 256, 304, 736, 1117, 1150
DrdI GACNNNNNNGTC 2 cut(s) 496, 1084
DseDI GACNNNNNNGTC 2 cut(s) 496, 1084
EaeI YGGCCR 1 cut(s) 1029
Eam1104I CTCTTC 1 cut(s) 1193
EarI CTCTTC 1 cut(s) 1193
Eco130I CCWWGG 1 cut(s) 1298
Eco147I AGGCCT 1 cut(s) 1204
Eco47I GGWCC 1 cut(s) 721
Eco47III AGCGCT 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 1217
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 723, 991
EcoT14I CCWWGG 1 cut(s) 1298
EcoT22I ATGCAT 2 cut(s) 154, 547
ErhI CCWWGG 1 cut(s) 1298
FaeI CATG 7 cut(s) 347, 466, 645, 675, 808, 1302, 1343
FaqI GGGAC 2 cut(s) 871, 1072
FatI CATG 7 cut(s) 343, 462, 641, 671, 804, 1298, 1339
FblI GTMKAC 2 cut(s) 418, 1036
Fnu4HI GCNGC 2 cut(s) 104, 224
FokI GGATG 6 cut(s) 464, 917, 955, 1275, 1331, 1359
Fsp4HI GCNGC 2 cut(s) 104, 224
FspBI CTAG 3 cut(s) 138, 494, 1091
GlaI GCGC 1 cut(s) 227
GluI GCNGC 2 cut(s) 104, 224
GsuI CTGGAG 2 cut(s) 694, 746
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 4 cut(s) 377, 617, 1031, 1204
HapII CCGG 2 cut(s) 1032, 1215
HgaI GACGC 1 cut(s) 542
HhaI GCGC 1 cut(s) 228
Hin1II CATG 7 cut(s) 347, 466, 645, 675, 808, 1302, 1343
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 1095
HinfI GANTC 9 cut(s) 22, 213, 370, 490, 497, 764, 811, 865, 1181
HpaII CCGG 2 cut(s) 1032, 1215
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 4 cut(s) 419, 625, 1037, 1133
Hpy188I TCNGA 5 cut(s) 256, 610, 741, 835, 1003
Hpy188III TCNNGA 6 cut(s) 308, 326, 494, 819, 1121, 1340
Hpy8I GTNNAC 4 cut(s) 419, 625, 1037, 1133
HpyAV CCTTC 3 cut(s) 388, 607, 911
HpyCH4III ACNGT 3 cut(s) 697, 899, 966
HpyCH4IV ACGT 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 5 cut(s) 232, 542, 753, 954, 1201
HpyF3I CTNAG 6 cut(s) 241, 477, 890, 1047, 1058, 1274
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 7 cut(s) 347, 466, 645, 675, 808, 1302, 1343
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 5 cut(s) 256, 304, 736, 1117, 1150
LmnI GCTCC 3 cut(s) 753, 821, 1073
Lsp1109I GCAGC 2 cut(s) 115, 235
LweI GCATC 4 cut(s) 102, 139, 554, 794
MaeI CTAG 3 cut(s) 138, 494, 1091
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 4 cut(s) 284, 530, 907, 1286
MalI GATC 5 cut(s) 258, 306, 738, 1119, 1152
MboI GATC 5 cut(s) 256, 304, 736, 1117, 1150
MboII GAAGA 6 cut(s) 61, 131, 323, 586, 1201, 1210
MfeI CAATTG 3 cut(s) 951, 1020, 1159
MflI RGATCY 1 cut(s) 304
MlyI GAGTC 5 cut(s) 379, 484, 506, 758, 1175
Mph1103I ATGCAT 2 cut(s) 154, 547
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 4 cut(s) 156, 350, 441, 800
MslI CAYNNNNRTG 1 cut(s) 883
MspI CCGG 2 cut(s) 1032, 1215
MspR9I CCNGG 3 cut(s) 725, 993, 1215
MunI CAATTG 3 cut(s) 951, 1020, 1159
MvaI CCWGG 2 cut(s) 725, 993
MwoI GCNNNNNNNGC 5 cut(s) 232, 542, 753, 954, 1201
NciI CCSGG 1 cut(s) 1215
NcoI CCATGG 1 cut(s) 1298
NdeII GATC 5 cut(s) 256, 304, 736, 1117, 1150
NlaIII CATG 7 cut(s) 347, 466, 645, 675, 808, 1302, 1343
NlaIV GGNNCC 2 cut(s) 330, 722
NmuCI GTSAC 3 cut(s) 284, 530, 907
NsiI ATGCAT 2 cut(s) 154, 547
NspI RCATGY 1 cut(s) 466
NspV TTCGAA 1 cut(s) 582
OliI CACNNNNGTG 1 cut(s) 883
PagI TCATGA 1 cut(s) 1339
PceI AGGCCT 1 cut(s) 1204
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 4 cut(s) 22, 213, 811, 865
PfoI TCCNGGA 1 cut(s) 723
PkrI GCNGC 2 cut(s) 105, 225
PleI GAGTC 5 cut(s) 378, 484, 505, 758, 1175
PpsI GAGTC 5 cut(s) 378, 484, 505, 758, 1175
PpuMI RGGWCCY 1 cut(s) 721
PsiI TTATAA 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 723, 991
PspGI CCWGG 2 cut(s) 723, 991
PspN4I GGNNCC 2 cut(s) 330, 722
PspPI GGNCC 1 cut(s) 721
PspPPI RGGWCCY 1 cut(s) 721
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 883
SaqAI TTAA 4 cut(s) 156, 350, 441, 800
SatI GCNGC 2 cut(s) 104, 224
Sau3AI GATC 5 cut(s) 256, 304, 736, 1117, 1150
Sau96I GGNCC 1 cut(s) 721
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 5 cut(s) 379, 484, 506, 758, 1175
ScrFI CCNGG 3 cut(s) 725, 993, 1215
SfaNI GCATC 4 cut(s) 102, 139, 554, 794
SfcI CTRYAG 1 cut(s) 748
SfuI TTCGAA 1 cut(s) 582
SinI GGWCC 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 883
SpeI ACTAGT 1 cut(s) 137
SseBI AGGCCT 1 cut(s) 1204
SspMI CTAG 3 cut(s) 138, 494, 1091
StuI AGGCCT 1 cut(s) 1204
StyD4I CCNGG 3 cut(s) 723, 991, 1213
StyI CCWWGG 1 cut(s) 1298
TaaI ACNGT 3 cut(s) 697, 899, 966
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 25, 582, 975, 1120
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 4 cut(s) 22, 213, 811, 865
Tru1I TTAA 4 cut(s) 156, 350, 441, 800
Tru9I TTAA 4 cut(s) 156, 350, 441, 800
TscAI CASTG 3 cut(s) 969, 1229, 1282
TseFI GTSAC 3 cut(s) 284, 530, 907
TseI GCWGC 2 cut(s) 103, 223
Tsp45I GTSAC 3 cut(s) 284, 530, 907
TspDTI ATGAA 2 cut(s) 782, 930
TspGWI ACGGA 1 cut(s) 1156
TspRI CASTG 3 cut(s) 969, 1229, 1282
VpaK11BI GGWCC 1 cut(s) 721
XapI RAATTY 2 cut(s) 568, 578
XbaI TCTAGA 1 cut(s) 493
XceI RCATGY 1 cut(s) 466
XmiI GTMKAC 2 cut(s) 418, 1036
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 3 cut(s) 138, 494, 1091
ZrmI AGTACT 1 cut(s) 482
Zsp2I ATGCAT 2 cut(s) 154, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.