Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000621.1

Orthogroup ID

OG0016988

Physical Location & Seq

Genomic Coordinates Forward (+)

47086 .. 49081

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000621.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggggaaatcaggttctacctcgatctttgatttccggcgattttcggtcggattctttgggggttttggttgttggggaagtgttgaacgtgttcctaaccttgttgctgctcgttttgatcgttggcagtcccttcgagataatagtctggttggcagtcccttccagactacagcccggttggcagtcccatccgatgcgtcacctggctcgtatccgggttttagggtgaaacttaggtcgggttctatcatgtatgttctcgatgtggattgtttgatcattgagcacacatttgtagagctcgtgacgaaattgtcaccgcctacaaagcatattgtgaagcaaaagaagctcactatgtggaacaagaagatcaagaagatgatgaagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.91

Weight (kDa)

10.25

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016988)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120861 RchiOBHm_Chr6g0286981
rosa_multiflora	Rmu_sc0000621.1_g000013 Rmu_sc0001336.1_g000024 Rmu_sc0003286.1_g000011
rosa_roxburghii	Rroxscaffold_1G00046530 Rroxscaffold_3G00267300 Rroxscaffold_6G00397470 Rroxscaffold_6G00398440
rosa_samantha	Rh2BG189800 Rh2BG214300 Rh3BG126400 Rh6AG063500 Rh7CG162900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	319
AciI	CCGC	1 cut(s)	326
AdeI	CACNNNGTG	1 cut(s)	366
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	208
AloI	GAACNNNNNNTCC	1 cut(s)	30
AluBI	AGCT	2 cut(s)	307, 358
AluI	AGCT	2 cut(s)	307, 358
Alw21I	GWGCWC	2 cut(s)	294, 309
ApeKI	GCWGC	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	93
AsuC2I	CCSGG	2 cut(s)	181, 222
AsuHPI	GGTGA	3 cut(s)	198, 244, 315
BanII	GRGCYC	1 cut(s)	309
BauI	CACGAG	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	294, 309
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	1 cut(s)	210
BciVI	GTATCC	1 cut(s)	228
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	2 cut(s)	181, 222
BfmI	CTRYAG	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	228
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	3 cut(s)	181, 210, 222
BmrFI	CCNGG	3 cut(s)	181, 210, 222
BmsI	GCATC	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	181, 222
BseBI	CCWGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	2 cut(s)	294, 309
BsiSI	CCGG	3 cut(s)	37, 181, 221
BslFI	GGGAC	3 cut(s)	118, 147, 176
BsmFI	GGGAC	3 cut(s)	118, 147, 176
Bsp1286I	GDGCHC	2 cut(s)	294, 309
Bsp143I	GATC	4 cut(s)	24, 121, 282, 378
BspACI	CCGC	1 cut(s)	326
BssMI	GATC	4 cut(s)	24, 121, 282, 378
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	194
BstKTI	GATC	4 cut(s)	27, 124, 285, 381
BstMBI	GATC	4 cut(s)	24, 121, 282, 378
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 334, 355
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	3 cut(s)	179, 208, 220
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	194
CseI	GACGC	1 cut(s)	192
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	4 cut(s)	179, 213, 307, 358
CviKI_1	RGCY	4 cut(s)	179, 213, 307, 358
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	4 cut(s)	26, 123, 284, 380
DpnII	GATC	4 cut(s)	24, 121, 282, 378
DraIII	CACNNNGTG	1 cut(s)	366
DrdI	GACNNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	1 cut(s)	259
FaiI	YATR	4 cut(s)	257, 261, 339, 365
FaqI	GGGAC	3 cut(s)	118, 147, 176
FatI	CATG	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
HapII	CCGG	3 cut(s)	37, 181, 221
HgaI	GACGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	259
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	3 cut(s)	37, 181, 221
HphI	GGTGA	3 cut(s)	198, 244, 315
Hpy188I	TCNGA	2 cut(s)	53, 199
Hpy188III	TCNNGA	5 cut(s)	140, 169, 266, 310, 382
HpyAV	CCTTC	3 cut(s)	146, 175, 388
HpyCH4IV	ACGT	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 334, 355
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	4 cut(s)	24, 121, 282, 378
LpnPI	CCDG	7 cut(s)	50, 137, 182, 194, 195, 222, 234
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	3 cut(s)	204, 310, 321
MalI	GATC	4 cut(s)	26, 123, 284, 380
MboI	GATC	4 cut(s)	24, 121, 282, 378
MboII	GAAGA	2 cut(s)	388, 397
MhlI	GDGCHC	2 cut(s)	294, 309
MluCI	AATT	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	93
MspI	CCGG	3 cut(s)	37, 181, 221
MspR9I	CCNGG	3 cut(s)	181, 210, 222
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	185, 334, 355
NciI	CCSGG	2 cut(s)	181, 222
NdeII	GATC	4 cut(s)	24, 121, 282, 378
NlaIII	CATG	1 cut(s)	259
NmuCI	GTSAC	3 cut(s)	204, 310, 321
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	4 cut(s)	24, 121, 282, 378
ScrFI	CCNGG	3 cut(s)	181, 210, 222
SduI	GDGCHC	2 cut(s)	294, 309
SetI	ASST	8 cut(s)	16, 23, 94, 105, 211, 245, 309, 360
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	179, 208, 220
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	3 cut(s)	23, 139, 267
TaqII	GACCGA	1 cut(s)	37
TasI	AATT	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	54
TseFI	GTSAC	3 cut(s)	204, 310, 321
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	3 cut(s)	204, 310, 321
XmnI	GAANNNNTTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.