Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003286.1

Orthogroup ID

OG0016988

Physical Location & Seq

Genomic Coordinates Forward (+)

47159 .. 50263

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003286.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

atgggttccccaatatggctgcttcttcttttctttattgctcctatagtcttagaccagcttgttgctcccaccatagcccaagatgacggtccatgcactctggcagctgaattctgctggaaatgttccgatatcggaaattacactaatggcagcatctaccaactggaaatgttccgatatcggaaaattcagacctcaacagcctcctctcctccttctcttccaaccaatctgactctggcttttacaactcttcccttggacgccaacaaagtgaatgcaatagcattgtgcagaggagacctcagacttgaatttaggagtattcaattaggacttttaaaaatgaataaaagtacagaggagattgtgttgttgaattttggtgaccggatttgggtgttggagtggtggcgcgtgcaaccacgagctgctgatggtggtggtgctgaggaggctctttggcagtcccttctaggtaatagtctggtcggcagtcccgtccaaactacagctctgttggcagtcccatccgatgcgtcatctggttggcagtcccttccagatgacatgagtccattccgatgcgtcatctgggtggcagtccctcccaaatggcatgagatgcctaggaagcaatccttcctagtcatcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

221

Amino Acids

24.54

Weight (kDa)

5.45

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016988)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120861 RchiOBHm_Chr6g0286981
rosa_multiflora	Rmu_sc0000621.1_g000013 Rmu_sc0001336.1_g000024 Rmu_sc0003286.1_g000011
rosa_roxburghii	Rroxscaffold_1G00046530 Rroxscaffold_3G00267300 Rroxscaffold_6G00397470 Rroxscaffold_6G00398440
rosa_samantha	Rh2BG189800 Rh2BG214300 Rh3BG126400 Rh6AG063500 Rh7CG162900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AcsI	RAATTY	4 cut(s)	113, 192, 320, 385
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	2 cut(s)	15, 403
AgsI	TTSAA	3 cut(s)	320, 335, 385
AluBI	AGCT	4 cut(s)	61, 110, 437, 521
AluI	AGCT	4 cut(s)	61, 110, 437, 521
Alw26I	GTCTC	1 cut(s)	300
ApeKI	GCWGC	4 cut(s)	19, 107, 156, 437
ApoI	RAATTY	4 cut(s)	113, 192, 320, 385
AspA2I	CCTAGG	1 cut(s)	635
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	92
AvrII	CCTAGG	1 cut(s)	635
BauI	CACGAG	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	6, 119, 168, 424
BccI	CCATC	2 cut(s)	437, 544
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	3 cut(s)	482, 636, 653
BfmI	CTRYAG	2 cut(s)	45, 516
BisI	GCNGC	4 cut(s)	20, 108, 157, 438
BlnI	CCTAGG	1 cut(s)	635
BlsI	GCNGC	4 cut(s)	21, 109, 158, 439
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	4 cut(s)	168, 532, 581, 621
BoxI	GACNNNNGTC	1 cut(s)	579
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
Bpu10I	CCTNAGC	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	264, 635
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 403
Bse1I	ACTGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	264, 635
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	2 cut(s)	15, 403
BseMII	CTCAG	2 cut(s)	325, 447
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	5 cut(s)	202, 207, 318, 383, 473
BseXI	GCAGC	4 cut(s)	6, 119, 168, 424
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	5 cut(s)	460, 489, 518, 547, 596
BslI	CCNNNNNNNGG	2 cut(s)	15, 403
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	5 cut(s)	460, 489, 518, 547, 596
BsmI	GAATGC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	300
BspCNI	CTCAG	2 cut(s)	324, 448
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	264, 635
BssNI	GRCGYC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	264, 635
Bst2BI	CACGAG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	2 cut(s)	231, 264
BstACI	GRCGYC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	3 cut(s)	52, 311, 456
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	536
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	423
BstMAI	GTCTC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	4 cut(s)	461, 527, 631, 640
BstPAI	GACNNNNGTC	1 cut(s)	579
BstPI	GGTNACC	1 cut(s)	392
BstSFI	CTRYAG	2 cut(s)	45, 516
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	4 cut(s)	6, 119, 168, 424
BtsCI	GGATG	1 cut(s)	536
Cac8I	GCNNGC	1 cut(s)	425
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	92
CseI	GACGC	3 cut(s)	278, 534, 583
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	3 cut(s)	96, 577, 626
CviJI	RGCY	9 cut(s)	19, 61, 80, 110, 209, 248, 437, 464, 521
CviKI_1	RGCY	9 cut(s)	19, 61, 80, 110, 209, 248, 437, 464, 521
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	3 cut(s)	52, 311, 456
DraI	TTTAAA	1 cut(s)	348
Eam1104I	CTCTTC	2 cut(s)	231, 264
EarI	CTCTTC	2 cut(s)	231, 264
Eco130I	CCWWGG	2 cut(s)	264, 635
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	2 cut(s)	136, 185
Eco47I	GGWCC	1 cut(s)	92
Eco91I	GGTNACC	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	392
EcoRI	GAATTC	1 cut(s)	113
EcoRV	GATATC	2 cut(s)	136, 185
EcoT14I	CCWWGG	2 cut(s)	264, 635
ErhI	CCWWGG	2 cut(s)	264, 635
FaeI	CATG	3 cut(s)	99, 580, 629
FaiI	YATR	6 cut(s)	16, 47, 77, 97, 578, 627
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	5 cut(s)	460, 489, 518, 547, 596
FatI	CATG	3 cut(s)	95, 576, 625
Fnu4HI	GCNGC	4 cut(s)	20, 108, 157, 438
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	4 cut(s)	20, 108, 157, 438
FspBI	CTAG	3 cut(s)	482, 636, 653
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	4 cut(s)	20, 108, 157, 438
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	3 cut(s)	278, 534, 583
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	99, 580, 629
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	241, 580
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	1 cut(s)	404
Hpy188I	TCNGA	9 cut(s)	133, 140, 182, 189, 198, 240, 314, 541, 590
Hpy188III	TCNNGA	1 cut(s)	569
HpyAV	CCTTC	4 cut(s)	231, 488, 575, 658
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	99, 287, 300, 427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	461, 527, 631, 640
HpyF3I	CTNAG	3 cut(s)	52, 311, 456
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	99, 580, 629
HspAI	GCGC	1 cut(s)	421
LmnI	GCTCC	2 cut(s)	46, 73
Lsp1109I	GCAGC	4 cut(s)	6, 119, 168, 424
LweI	GCATC	4 cut(s)	168, 532, 581, 621
MaeI	CTAG	3 cut(s)	482, 636, 653
MaeIII	GTNAC	1 cut(s)	392
MboII	GAAGA	3 cut(s)	17, 218, 251
MluCI	AATT	6 cut(s)	113, 142, 192, 320, 335, 385
MlyI	GAGTC	2 cut(s)	235, 589
MmeI	TCCRAC	2 cut(s)	254, 390
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	2 cut(s)	589, 602
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	289
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	461, 527, 631, 640
NlaIII	CATG	3 cut(s)	99, 580, 629
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PctI	GAATGC	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	21, 109, 158, 439
PleI	GAGTC	2 cut(s)	235, 588
PpsI	GAGTC	2 cut(s)	235, 588
PshAI	GACNNNNGTC	1 cut(s)	579
PspEI	GGTNACC	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	2 cut(s)	589, 602
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	4 cut(s)	20, 108, 157, 438
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	2 cut(s)	235, 589
SetI	ASST	7 cut(s)	63, 112, 203, 312, 439, 487, 523
SfaNI	GCATC	4 cut(s)	168, 532, 581, 621
SfcI	CTRYAG	2 cut(s)	45, 516
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	589, 602
Sse9I	AATT	6 cut(s)	113, 142, 192, 320, 335, 385
SspMI	CTAG	3 cut(s)	482, 636, 653
StyI	CCWWGG	2 cut(s)	264, 635
TaaI	ACNGT	1 cut(s)	92
TasI	AATT	6 cut(s)	113, 142, 192, 320, 335, 385
TatI	WGTACW	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	4 cut(s)	19, 107, 156, 437
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	4 cut(s)	113, 192, 320, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	635
XspI	CTAG	3 cut(s)	482, 636, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.