Rroxscaffold_6G00397470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016988
Physical Location & Seq
Forward (+)
19166398 .. 19171380
4983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397470.1

Sequence Viewer

Length: 252 bp
ATGCGTATCTTACCTAGTTGGCAGTCCCTTCTAGGTAATAGTACGGTCGGCGGTCCCGTCCGGACTACGGCTCGGTTGGCGGTCCCATCCGACGCACACAGTTGGCGGTCTCTTCCGGATGACTTGAGGTCACACAATTTCCACTTCGTCGAGGTCTTTGAGGCTACGGAAGTTCTGCTATGCTATCGAGTCACCCTCGGAACTCACAATATTGTAGCTGCTAGCAGAAATGCTGAATTCTTGGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.26

Weight (kDa)

6.38

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 60, 115
AciI CCGC 3 cut(s) 51, 80, 106
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 67
AhdI GACNNNNNGTC 1 cut(s) 127
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
Alw26I GTCTC 1 cut(s) 114
Aor13HI TCCGGA 2 cut(s) 60, 115
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 53, 82
AsuHPI GGTGA 1 cut(s) 184
AsuNHI GCTAGC 1 cut(s) 221
AvaII GGWCC 2 cut(s) 53, 82
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 3 cut(s) 15, 32, 222
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme18I GGWCC 2 cut(s) 53, 82
BmeRI GACNNNNNGTC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 53, 82
BmiI GGNNCC 2 cut(s) 55, 84
BmtI GCTAGC 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpuEI CTTGAG 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 2 cut(s) 60, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseAI TCCGGA 2 cut(s) 60, 115
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 86, 124
BseLI CCNNNNNNNGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 61, 116
BslFI GGGAC 3 cut(s) 10, 39, 68
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 3 cut(s) 10, 39, 68
Bso31I GGTCTC 1 cut(s) 114
Bsp13I TCCGGA 2 cut(s) 60, 115
BspACI CCGC 3 cut(s) 51, 80, 106
BspEI TCCGGA 2 cut(s) 60, 115
BspLI GGNNCC 2 cut(s) 55, 84
BspOI GCTAGC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 46, 101
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 223
BstF5I GGATG 2 cut(s) 86, 124
BstMAI GTCTC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 86, 124
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 2 cut(s) 53, 82
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 42
CviJI RGCY 3 cut(s) 71, 164, 218
CviKI_1 RGCY 3 cut(s) 71, 164, 218
CviQI GTAC 1 cut(s) 42
DriI GACNNNNNGTC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 117
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 53, 82
EcoRI GAATTC 1 cut(s) 236
FaiI YATR 1 cut(s) 181
FaqI GGGAC 3 cut(s) 10, 39, 68
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 73, 131
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 3 cut(s) 15, 32, 222
GluI GCNGC 1 cut(s) 219
HapII CCGG 2 cut(s) 61, 116
HgaI GACGC 1 cut(s) 101
HinfI GANTC 1 cut(s) 189
HpaII CCGG 2 cut(s) 61, 116
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 91, 200
Hpy188III TCNNGA 2 cut(s) 61, 116
Hpy99I CGWCG 2 cut(s) 95, 152
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 46, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
Kpn2I TCCGGA 2 cut(s) 60, 115
LpnPI CCDG 2 cut(s) 74, 129
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 3 cut(s) 15, 32, 222
MaeIII GTNAC 2 cut(s) 129, 190
MboII GAAGA 1 cut(s) 104
MluCI AATT 2 cut(s) 136, 236
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 4 cut(s) 120, 145, 154, 206
MroI TCCGGA 2 cut(s) 60, 115
MspI CCGG 2 cut(s) 61, 116
MwoI GCNNNNNNNGC 1 cut(s) 77
NheI GCTAGC 1 cut(s) 221
NlaIV GGNNCC 2 cut(s) 55, 84
NmuCI GTSAC 2 cut(s) 129, 190
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 55, 84
PspPI GGNCC 2 cut(s) 53, 82
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 2 cut(s) 53, 82
SchI GAGTC 1 cut(s) 198
SetI ASST 5 cut(s) 16, 37, 131, 156, 220
SinI GGWCC 2 cut(s) 53, 82
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 136, 236
SsiI CCGC 3 cut(s) 51, 80, 106
SspI AATATT 1 cut(s) 211
SspMI CTAG 3 cut(s) 15, 32, 222
TaaI ACNGT 2 cut(s) 46, 101
TaqI TCGA 2 cut(s) 150, 187
TasI AATT 2 cut(s) 136, 236
TseFI GTSAC 2 cut(s) 129, 190
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 2 cut(s) 129, 190
TspGWI ACGGA 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 53, 82
XapI RAATTY 1 cut(s) 236
XspI CTAG 3 cut(s) 15, 32, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.