Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016988

Physical Location & Seq

Genomic Coordinates Forward (+)

65764793 .. 65765470

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTTCCCCAATATGGCTGCTTCTTCTTTTCTTTATTGCTCCTATAGTCTTAGACCAGCTTGTTGCTCCCACCATAGCCCAAGATGACGGTCCATGCACTCTGGCAGCTGAATTCTGCTGGATTACACTAATGGCAAGCATCTACCAACAATTTGCTGTGTTGGCGACTCGCCGAGATTATCTTGCGAAATTGTTCGGGGAAAAAGGAAGCAATCTTATGGTCGAGCCTTGCATGTTACGGTACGGTACATCGCAGAACTTAATATCCGGTATTGAGGAAGAGAACCCCGTCAAGTATGTGTCCAGCCCAAACAACGCGTTAAATGTGACAACGTTCGGGCGGGTGCTTAACCACGTACGTGTTGAAAATTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

126

Amino Acids

14.07

Weight (kDa)

5.26

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016988)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0120861 RchiOBHm_Chr6g0286981
rosa_multiflora	Rmu_sc0000621.1_g000013 Rmu_sc0001336.1_g000024 Rmu_sc0003286.1_g000011
rosa_roxburghii	Rroxscaffold_1G00046530 Rroxscaffold_3G00267300 Rroxscaffold_6G00397470 Rroxscaffold_6G00398440
rosa_samantha	Rh2BG189800 Rh2BG214300 Rh3BG126400 Rh6AG063500 Rh7CG162900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	320
AciI	CCGC	1 cut(s)	343
AclI	AACGTT	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	113, 370
AfaI	GTAC	3 cut(s)	245, 250, 360
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	2 cut(s)	318, 361
AgsI	TTSAA	1 cut(s)	368
AleI	CACNNNNGTG	1 cut(s)	360
AloI	GAACNNNNNNTCC	2 cut(s)	251, 283
AluBI	AGCT	2 cut(s)	61, 110
AluI	AGCT	2 cut(s)	61, 110
ApeKI	GCWGC	2 cut(s)	19, 107
ApoI	RAATTY	2 cut(s)	113, 370
Asp700I	GAANNNNTTC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	6, 119
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	20, 108
BlsI	GCNGC	2 cut(s)	21, 109
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	150
BsaAI	YACGTR	2 cut(s)	358, 362
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	6, 119
Bsh1236I	CGCG	1 cut(s)	320
BsiSI	CCGG	1 cut(s)	270
BsiWI	CGTACG	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	7
Bst4CI	ACNGT	3 cut(s)	92, 243, 248
Bst6I	CTCTTC	1 cut(s)	276
BstBAI	YACGTR	2 cut(s)	358, 362
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	320
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	6, 119
BtgZI	GCGATG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	244, 249, 359
CviAII	CATG	2 cut(s)	96, 235
CviJI	RGCY	6 cut(s)	19, 61, 80, 110, 229, 309
CviKI_1	RGCY	6 cut(s)	19, 61, 80, 110, 229, 309
CviQI	GTAC	3 cut(s)	244, 249, 359
DdeI	CTNAG	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	113
FaeI	CATG	2 cut(s)	99, 238
FaiI	YATR	7 cut(s)	16, 47, 77, 97, 221, 236, 300
FatI	CATG	2 cut(s)	95, 234
FauI	CCCGC	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	20, 108
Fsp4HI	GCNGC	2 cut(s)	20, 108
GluI	GCNGC	2 cut(s)	20, 108
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	2 cut(s)	99, 238
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	270
HpyCH4III	ACNGT	3 cut(s)	92, 243, 248
HpyCH4IV	ACGT	3 cut(s)	335, 357, 361
HpyCH4V	TGCA	2 cut(s)	99, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	3 cut(s)	335, 357, 361
Hsp92II	CATG	2 cut(s)	99, 238
LmnI	GCTCC	2 cut(s)	46, 73
LpnPI	CCDG	5 cut(s)	71, 89, 106, 283, 319
Lsp1109I	GCAGC	2 cut(s)	6, 119
LweI	GCATC	1 cut(s)	150
MaeII	ACGT	3 cut(s)	335, 357, 361
MaeIII	GTNAC	2 cut(s)	237, 328
MboII	GAAGA	2 cut(s)	17, 293
MluCI	AATT	4 cut(s)	113, 152, 191, 370
MluI	ACGCGT	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	4 cut(s)	263, 323, 351, 375
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	164
NlaIII	CATG	2 cut(s)	99, 238
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	238
OliI	CACNNNNGTG	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	194
Pfl23II	CGTACG	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	21, 109
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	2 cut(s)	358, 362
Psp1406I	AACGTT	1 cut(s)	335
PspLI	CGTACG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	3 cut(s)	245, 250, 360
RsaNI	GTAC	3 cut(s)	244, 249, 359
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	4 cut(s)	263, 323, 351, 375
SatI	GCNGC	2 cut(s)	20, 108
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	1 cut(s)	163
SetI	ASST	5 cut(s)	63, 112, 338, 360, 364
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	4 cut(s)	113, 152, 191, 370
SsiI	CCGC	1 cut(s)	343
TaaI	ACNGT	3 cut(s)	92, 243, 248
TaiI	ACGT	3 cut(s)	338, 360, 364
TaqI	TCGA	1 cut(s)	225
TasI	AATT	4 cut(s)	113, 152, 191, 370
Tru1I	TTAA	4 cut(s)	263, 323, 351, 375
Tru9I	TTAA	4 cut(s)	263, 323, 351, 375
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	19, 107
Tsp45I	GTSAC	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	2 cut(s)	113, 370
XceI	RCATGY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.