Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000809.1

Orthogroup ID

OG0007839

Physical Location & Seq

Genomic Coordinates Reverse (-)

163310 .. 166741

Gene Structure 3432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggaaggtggaggagcaactggtatgctagtggttgtgacaggtgcaagccatgtcaagtatgggcttagagggacaggattgccagccagaatttcaaaaaagatgcaaaagaaaaaccaagtagttatattacttgatcctgaaagacaggacatacggcgagagggagaagttcctgttgctgatttcttgtggtattctgctgccagaccctgcaataggaattgttttgatcgtgctgaaattgctcgagttatgaatgcagcaggcaggaaaagagatgcccttccacaggaccttcagaaaggactggatcttggtttggtatctccagaggtattacagaacttctttgatctggagcaatatcctcttgtttcggaacttactcaacggttccagggtttcagggaaagattgttggtagatcccaaattcttgcatagattagctatagaagaatctatatcaataactactactctaatagcacaatatgagaggcgtaaagaaaatttctttgaggagctggactacgtgattacggatactttaagggggattgttgtcgatttctttacagtgtggcttcctgctccgacgttgtcgttcctttcatatgctgatgaaatgaatgcgcctgatagcatggatgctattaaaggtctccttgggtccattccagacaatgcgtttcagaagagtcttgtggggcaggattggagtatcaatcatagacttgcatctgtgcttttgggtggtctaaaactagctagtgttggatttatttccagtatcggggctgttgcttcctcaaattgtctgtttgcagttcgcaaattcatcaatccagctctggttactaatcagcaaaagaaaagaactccaatactcaaaacagcaataatctatggaggctttctcggaacttcctcaaatctccgttatcagattattgctggactagtggagcatcgactttctgacgaattttcttctcaaacaatacttgtaaatatgctgtcttttctttctcggacaataaactcttattggggaactcagcaatggattgatcttgctcgcttcactggactgcaagcttcgaagagtgaaccttccatttaccaaacaccggattctactatcctggttgcattggaatgtaacaacacagaggaaacaagtgtagacgatatacaaaacaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009741 GO:0009987 GO:0010033 GO:0014070 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cofac_haem_bdg RETICULATA-like

Protein Analysis

404

Amino Acids

45.05

Weight (kDa)

6.48

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RETICULATA-like	PF11891	139 - 323	1.4e-61	Protein RETICULATA-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40400 AT2G40400 AT2G40400 AT3G56140 AT3G56140 AT3G56140
fragaria_vesca	FvH4_7g25380 FvH4_7g25380 FvH4_7g25380
malus_domestica	MD01G1160000.v1.1
prunus_persica	Prupe.2G258000_v2.0.a1
pyrus_communis	pycom01g17640
rosa_chinensis	RchiOBHm_Chr1g0371311 RchiOBHm_Chr1g0371331
rosa_laevigata	RLG00000026971
rosa_multiflora	Rmu_co8326835.1_g000001 Rmu_sc0000809.1_g000039
rosa_roxburghii	Rroxscaffold_4G00285790
rosa_rugosa	Rorug01G0363100
rosa_samantha	Rh1AG373000 Rh1BG336500 Rh1CG349900 Rh1DG367600
rosa_wichuraiana	Rw1G032810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1194
AclWI	GGATC	3 cut(s)	134, 324, 425
AcsI	RAATTY	5 cut(s)	93, 437, 517, 842, 992
AcuI	CTGAAG	1 cut(s)	287
AfiI	CCNNNNNNNGG	4 cut(s)	222, 295, 801, 1138
AgsI	TTSAA	1 cut(s)	99
AhlI	ACTAGT	1 cut(s)	967
AjnI	CCWGG	2 cut(s)	402, 1152
AluBI	AGCT	5 cut(s)	455, 532, 776, 857, 1106
AluI	AGCT	5 cut(s)	455, 532, 776, 857, 1106
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	3 cut(s)	134, 324, 425
AlwNI	CAGNNNCTG	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	206, 266
ApoI	RAATTY	5 cut(s)	93, 437, 517, 842, 992
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	2 cut(s)	298, 678
AsuII	TTCGAA	1 cut(s)	1109
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	298, 678
BbvI	GCAGC	2 cut(s)	193, 278
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	404, 1154
BciVI	GTATCC	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	674
BcuI	ACTAGT	1 cut(s)	967
BfaI	CTAG	4 cut(s)	29, 773, 777, 968
BfmI	CTRYAG	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	2 cut(s)	207, 267
BlsI	GCNGC	2 cut(s)	208, 268
Bme1390I	CCNGG	2 cut(s)	404, 1154
Bme18I	GGWCC	2 cut(s)	298, 678
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	298, 678
BmiI	GGNNCC	2 cut(s)	401, 679
BmrFI	CCNGG	2 cut(s)	404, 1154
BmsI	GCATC	5 cut(s)	96, 274, 646, 755, 985
BplI	GAGNNNNNCTC	2 cut(s)	909, 941
BpmI	CTGGAG	2 cut(s)	318, 383
Bpu14I	TTCGAA	1 cut(s)	1109
BsaAI	YACGTR	1 cut(s)	541
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	403, 673
BsaWI	WCCGGW	1 cut(s)	1138
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 295, 801, 1138
Bse1I	ACTGG	4 cut(s)	25, 318, 795, 1099
Bse3DI	GCAATG	1 cut(s)	1076
BseBI	CCWGG	2 cut(s)	404, 1154
BseDI	CCNNGG	2 cut(s)	403, 673
BseGI	GGATG	1 cut(s)	661
BseLI	CCNNNNNNNGG	4 cut(s)	222, 295, 801, 1138
BseMI	GCAATG	1 cut(s)	1076
BseMII	CTCAG	1 cut(s)	1079
BseNI	ACTGG	4 cut(s)	25, 318, 795, 1099
BseRI	GAGGAG	2 cut(s)	27, 542
BseXI	GCAGC	2 cut(s)	193, 278
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	1139
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	4 cut(s)	222, 295, 801, 1138
BsmAI	GTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	2 cut(s)	268, 643
Bso31I	GGTCTC	1 cut(s)	674
BsoBI	CYCGRG	1 cut(s)	252
Bsp119I	TTCGAA	1 cut(s)	1109
Bsp143I	GATC	6 cut(s)	139, 235, 316, 358, 430, 1078
BspCNI	CTCAG	1 cut(s)	1078
BspLI	GGNNCC	2 cut(s)	401, 679
BspPI	GGATC	3 cut(s)	134, 324, 425
BspT104I	TTCGAA	1 cut(s)	1109
BspTNI	GGTCTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	1076
BsrI	ACTGG	4 cut(s)	25, 318, 795, 1099
BssECI	CCNNGG	2 cut(s)	403, 673
BssMI	GATC	6 cut(s)	139, 235, 316, 358, 430, 1078
BssT1I	CCWWGG	1 cut(s)	673
Bst2UI	CCWGG	2 cut(s)	404, 1154
Bst4CI	ACNGT	2 cut(s)	399, 586
Bst6I	CTCTTC	2 cut(s)	698, 1106
BstBAI	YACGTR	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	1109
BstC8I	GCNNGC	5 cut(s)	49, 87, 271, 1087, 1104
BstDEI	CTNAG	2 cut(s)	68, 1065
BstENI	CCTNNNNNAGG	2 cut(s)	220, 293
BstF5I	GGATG	1 cut(s)	661
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	6 cut(s)	142, 238, 319, 361, 433, 1081
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	6 cut(s)	139, 235, 316, 358, 430, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	404, 1154
BstSCI	CCNGG	2 cut(s)	402, 1152
BstSFI	CTRYAG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	193, 278
BstX2I	RGATCY	2 cut(s)	316, 430
BstYI	RGATCY	2 cut(s)	316, 430
BsuI	GTATCC	1 cut(s)	544
BtsCI	GGATG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	591, 1092
Cac8I	GCNNGC	5 cut(s)	49, 87, 271, 1087, 1104
CaiI	CAGNNNCTG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	298, 678
CviAII	CATG	2 cut(s)	53, 652
DdeI	CTNAG	2 cut(s)	68, 1065
DpnI	GATC	6 cut(s)	141, 237, 318, 360, 432, 1080
DpnII	GATC	6 cut(s)	139, 235, 316, 358, 430, 1078
Eam1104I	CTCTTC	2 cut(s)	698, 1106
EarI	CTCTTC	2 cut(s)	698, 1106
Eco130I	CCWWGG	1 cut(s)	673
Eco31I	GGTCTC	1 cut(s)	674
Eco47I	GGWCC	2 cut(s)	298, 678
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	252
EcoNI	CCTNNNNNAGG	2 cut(s)	220, 293
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	402, 1152
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	2 cut(s)	56, 655
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	52, 651
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	1194
Fnu4HI	GCNGC	2 cut(s)	207, 267
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	2 cut(s)	207, 267
FspBI	CTAG	4 cut(s)	29, 773, 777, 968
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	2 cut(s)	207, 267
GsuI	CTGGAG	2 cut(s)	318, 383
HapII	CCGG	1 cut(s)	1139
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	2 cut(s)	56, 655
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HindIII	AAGCTT	1 cut(s)	1104
HinfI	GANTC	3 cut(s)	464, 706, 1142
HpaII	CCGG	1 cut(s)	1139
Hpy166II	GTNNAC	2 cut(s)	1118, 1195
Hpy188I	TCNGA	8 cut(s)	306, 385, 603, 702, 929, 954, 988, 1041
Hpy188III	TCNNGA	4 cut(s)	143, 335, 362, 686
Hpy8I	GTNNAC	2 cut(s)	1118, 1195
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	3 cut(s)	299, 311, 1131
HpyCH4III	ACNGT	2 cut(s)	399, 586
HpyCH4IV	ACGT	2 cut(s)	540, 605
HpyCH4V	TGCA	9 cut(s)	47, 109, 219, 266, 445, 746, 833, 1102, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	68, 1065
HpySE526I	ACGT	2 cut(s)	540, 605
Hsp92II	CATG	2 cut(s)	56, 655
HspAI	GCGC	1 cut(s)	641
Kzo9I	GATC	6 cut(s)	139, 235, 316, 358, 430, 1078
LmnI	GCTCC	5 cut(s)	14, 364, 529, 604, 973
Lsp1109I	GCAGC	2 cut(s)	193, 278
LweI	GCATC	5 cut(s)	96, 274, 646, 755, 985
MaeI	CTAG	4 cut(s)	29, 773, 777, 968
MaeII	ACGT	2 cut(s)	540, 605
MaeIII	GTNAC	3 cut(s)	37, 862, 1169
MalI	GATC	6 cut(s)	141, 237, 318, 360, 432, 1080
MboI	GATC	6 cut(s)	139, 235, 316, 358, 430, 1078
MboII	GAAGA	4 cut(s)	473, 715, 990, 1123
MflI	RGATCY	2 cut(s)	316, 430
MluCI	AATT	8 cut(s)	93, 226, 246, 437, 517, 820, 842, 992
MlyI	GAGTC	1 cut(s)	715
MmeI	TCCRAC	2 cut(s)	626, 763
MseI	TTAA	2 cut(s)	557, 663
MslI	CAYNNNNRTG	1 cut(s)	1165
MspI	CCGG	1 cut(s)	1139
MspR9I	CCNGG	2 cut(s)	404, 1154
Mva1269I	GAATGC	2 cut(s)	268, 643
MvaI	CCWGG	2 cut(s)	404, 1154
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	6 cut(s)	139, 235, 316, 358, 430, 1078
NlaIII	CATG	2 cut(s)	56, 655
NlaIV	GGNNCC	2 cut(s)	401, 679
NmuCI	GTSAC	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	1109
PaeR7I	CTCGAG	1 cut(s)	252
PctI	GAATGC	2 cut(s)	268, 643
PfeI	GAWTC	2 cut(s)	464, 1142
PflFI	GACNNNGTC	1 cut(s)	607
PkrI	GCNGC	2 cut(s)	208, 268
PleI	GAGTC	1 cut(s)	714
PpsI	GAGTC	1 cut(s)	714
Ppu21I	YACGTR	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	402, 1152
PspGI	CCWGG	2 cut(s)	402, 1152
PspN4I	GGNNCC	2 cut(s)	401, 679
PspPI	GGNCC	2 cut(s)	298, 678
PspPPI	RGGWCCY	1 cut(s)	298
PspXI	VCTCGAGB	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	2 cut(s)	316, 430
PsyI	GACNNNGTC	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	1165
SaqAI	TTAA	2 cut(s)	557, 663
SatI	GCNGC	2 cut(s)	207, 267
Sau3AI	GATC	6 cut(s)	139, 235, 316, 358, 430, 1078
Sau96I	GGNCC	2 cut(s)	298, 678
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	2 cut(s)	404, 1154
SfaNI	GCATC	5 cut(s)	96, 274, 646, 755, 985
SfcI	CTRYAG	1 cut(s)	456
Sfr274I	CTCGAG	1 cut(s)	252
SfuI	TTCGAA	1 cut(s)	1109
SinI	GGWCC	2 cut(s)	298, 678
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	1165
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SpeI	ACTAGT	1 cut(s)	967
Sse9I	AATT	8 cut(s)	93, 226, 246, 437, 517, 820, 842, 992
SspMI	CTAG	4 cut(s)	29, 773, 777, 968
StyD4I	CCNGG	2 cut(s)	402, 1152
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	2 cut(s)	399, 586
TaiI	ACGT	2 cut(s)	543, 608
TaqI	TCGA	4 cut(s)	253, 573, 979, 1109
TasI	AATT	8 cut(s)	93, 226, 246, 437, 517, 820, 842, 992
TfiI	GAWTC	2 cut(s)	464, 1142
Tru1I	TTAA	2 cut(s)	557, 663
Tru9I	TTAA	2 cut(s)	557, 663
TscAI	CASTG	2 cut(s)	591, 1099
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	206, 266
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	5 cut(s)	275, 609, 645, 650, 835
TspGWI	ACGGA	2 cut(s)	563, 935
TspRI	CASTG	2 cut(s)	591, 1099
Tth111I	GACNNNGTC	1 cut(s)	607
VpaK11BI	GGWCC	2 cut(s)	298, 678
XagI	CCTNNNNNAGG	2 cut(s)	220, 293
XapI	RAATTY	5 cut(s)	93, 437, 517, 842, 992
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	1194
XspI	CTAG	4 cut(s)	29, 773, 777, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.