Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000841.1

Orthogroup ID

OG0012180

Physical Location & Seq

Genomic Coordinates Forward (+)

86732 .. 87205

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgagtgatgtttatggaattcaaccagcttcggagcattgcatttgtatgattaatcttttgggtagagctgggaaggtaagggaagcccaagaattggtttggaggctacctttcaaaccagatcctgctgtttggggagcattgcttggtatatgtgggctcggtgagacaaatgccgaggttgccaaatatgcggccaaacaactcctggagctggatcccttaaatgcaccagcccatgtggtcctttgtaacatatatgcagcaaatggtatgcatattgaggaaaaatcactgagaagggagatggggttgaaaggagttagaaaggttcctgggtgcagttggattctggtgcaagggagagttaatgtattcctctctggagataaattacacccggatgttgaggagatgctgtcaatcctatttggcaccattggtgaatcacaaaaacagtttagtgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

157

Amino Acids

17.21

Weight (kDa)

6.42

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	59 - 118	1.9e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32415
fragaria_vesca	FvH4_5g21130 FvH4_5g21130 FvH4_5g21130
malus_domestica	MD06G1040900.v1.1
prunus_persica	Prupe.5G047200_v2.0.a1
pyrus_communis	pycom06g03410
rosa_chinensis	RchiOBHm_Chr7g0208251
rosa_laevigata	RLG00000003235
rosa_multiflora	Rmu_sc0000841.1_g000023 Rmu_sc0000841.1_g000024 Rmu_sc0007869.1_g000019
rosa_roxburghii	Rroxscaffold_3G00250640
rosa_rugosa	Rorug07G0102500
rosa_samantha	Rh7AG236700 Rh7BG232300 Rh7CG252600 Rh7DG242700
rosa_wichuraiana	Rw7G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	97
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	3 cut(s)	119, 215, 228
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	97, 217
AgsI	TTSAA	3 cut(s)	23, 118, 319
AjnI	CCWGG	2 cut(s)	210, 337
AluBI	AGCT	3 cut(s)	29, 71, 217
AluI	AGCT	3 cut(s)	29, 71, 217
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	3 cut(s)	119, 215, 228
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	18
AseI	ATTAAT	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	2 cut(s)	179, 458
AvaII	GGWCC	1 cut(s)	247
BamHI	GGATCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	2 cut(s)	212, 339
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	198, 267
BlsI	GCNGC	2 cut(s)	199, 268
Bme1390I	CCNGG	3 cut(s)	212, 339, 404
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	3 cut(s)	222, 336, 439
BmrFI	CCNGG	3 cut(s)	212, 339, 404
BmsI	GCATC	1 cut(s)	408
BpmI	CTGGAG	2 cut(s)	233, 408
BpuMI	CCSGG	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	180, 338
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 407, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 217
Bse3DI	GCAATG	2 cut(s)	37, 143
BseBI	CCWGG	2 cut(s)	212, 339
BseDI	CCNNGG	2 cut(s)	180, 338
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	97, 217
BseMI	GCAATG	2 cut(s)	37, 143
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	364
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	2 cut(s)	97, 217
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	124, 220
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	222, 336, 439
BspPI	GGATC	3 cut(s)	119, 215, 228
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	2 cut(s)	37, 143
BssECI	CCNNGG	2 cut(s)	180, 338
BssMI	GATC	2 cut(s)	124, 220
Bst2UI	CCWGG	2 cut(s)	212, 339
Bst4CI	ACNGT	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	127, 223
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	124, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 194
BstNI	CCWGG	2 cut(s)	212, 339
BstSCI	CCNGG	3 cut(s)	210, 337, 402
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	2 cut(s)	124, 220
BstYI	RGATCY	2 cut(s)	124, 220
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	247
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	8 cut(s)	29, 71, 89, 109, 163, 200, 217, 239
CviKI_1	RGCY	8 cut(s)	29, 71, 89, 109, 163, 200, 217, 239
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	2 cut(s)	126, 222
DpnII	GATC	2 cut(s)	124, 220
EaeI	YGGCCR	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	210, 337
EcoT22I	ATGCAT	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	1 cut(s)	245
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	198, 267
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	198, 267
GluI	GCNGC	2 cut(s)	198, 267
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	2 cut(s)	233, 408
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	1 cut(s)	245
HinfI	GANTC	2 cut(s)	352, 449
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	179, 458
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	387
HpyAV	CCTTC	2 cut(s)	70, 297
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4V	TGCA	6 cut(s)	42, 233, 266, 280, 345, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 194
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	124, 220
LmnI	GCTCC	3 cut(s)	34, 140, 214
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	126, 222
MboI	GATC	2 cut(s)	124, 220
MflI	RGATCY	2 cut(s)	124, 220
MhlI	GDGCHC	1 cut(s)	165
MluCI	AATT	3 cut(s)	18, 95, 395
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	99, 175, 280, 392, 406
Mph1103I	ATGCAT	1 cut(s)	282
MseI	TTAA	3 cut(s)	54, 227, 372
MslI	CAYNNNNRTG	2 cut(s)	47, 405
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	3 cut(s)	212, 339, 404
MvaI	CCWGG	2 cut(s)	212, 339
MwoI	GCNNNNNNNGC	2 cut(s)	185, 194
NciI	CCSGG	1 cut(s)	404
NdeII	GATC	2 cut(s)	124, 220
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	3 cut(s)	222, 336, 439
NmeAIII	GCCGAG	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	352, 449
PflMI	CCANNNNNTGG	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	199, 268
PshBI	ATTAAT	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	210, 337
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	210, 337
PspN4I	GGNNCC	3 cut(s)	222, 336, 439
PspPI	GGNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	124, 220
RseI	CAYNNNNRTG	2 cut(s)	47, 405
SaqAI	TTAA	3 cut(s)	54, 227, 372
SatI	GCNGC	2 cut(s)	198, 267
Sau3AI	GATC	2 cut(s)	124, 220
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	3 cut(s)	212, 339, 404
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	7 cut(s)	31, 73, 81, 115, 186, 219, 336
SfaNI	GCATC	1 cut(s)	408
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	47, 405
Sse9I	AATT	3 cut(s)	18, 95, 395
SsiI	CCGC	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	210, 337, 402
TaaI	ACNGT	1 cut(s)	462
TasI	AATT	3 cut(s)	18, 95, 395
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	352, 449
Tru1I	TTAA	3 cut(s)	54, 227, 372
Tru9I	TTAA	3 cut(s)	54, 227, 372
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	303
Van91I	CCANNNNNTGG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	247
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.