Rmu_sc0000894.1_g000067

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000894.1
OG0018680
Physical Location & Seq
Reverse (-)
346288 .. 347114
827 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
atgcatcgtgatctgaagactggaatgggtaaacatatgaggctttatgaggtgttgcctcggttggataagacaatggatcgaatacgggaaagggtattgtttgatgatttcatttctatcaacgcaagtccggatcaaattaagtttgaatcctgttttttcatgcaagatgagtttctttttcctgctttgggatcctcaatagttactcttacgcagtacggtaaaccatacaggaagtggaacgttacatttatgaacaacaatgacaaccccacactgagttgcacgtgcaagctgtttgagtcggatggaattccttgctgccatatatttactgtgatgaaagtgaagcagataacagcgtttccagattctttggtgacaaacaggtggactaaagatgcgacgactacaaatgtgaaaaccctacctagcaatggtgagatccccgaccattcccttcgcctagcaaggtacggtgagatgatggcagaatgtacacagacttgttccagggtgtcattttccgaagacgattactatgaaactattgaatacatgaggcgtatgtctattagggcgaggagatatccagttcatgaagaccaggttgatacaacacataacagtctttacggacttcacgagaatgttgtgaaggatcctaccatatgcagatcaaaaggtactcgagcaaatccccccactgttgtcgatgaaggaaaagcagggcttaccaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

249

Amino Acids

28.72

Weight (kDa)

7.59

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 85 - 116 1.2e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018680)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000894.1_g000067
rosa_roxburghii Rroxscaffold_5G00350850
rosa_samantha Rh1DG303600 Rh2AG311300 Rh2BG305400 Rh2BG394200 Rh2DG335300 Rh3BG310800 Rh7CG048700
rosa_wichuraiana Rw2G031690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 133
AclI AACGTT 1 cut(s) 249
AclWI GGATC 7 cut(s) 87, 144, 192, 205, 445, 662, 675
AcsI RAATTY 1 cut(s) 318
AcuI CTGAAG 1 cut(s) 35
AcvI CACGTG 1 cut(s) 294
AfaI GTAC 4 cut(s) 224, 482, 505, 694
AfiI CCNNNNNNNGG 2 cut(s) 194, 443
AgsI TTSAA 2 cut(s) 152, 560
AjnI CCWGG 2 cut(s) 518, 612
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
AlwI GGATC 7 cut(s) 87, 144, 192, 205, 445, 662, 675
Ama87I CYCGRG 1 cut(s) 696
Aor13HI TCCGGA 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 327
ApoI RAATTY 1 cut(s) 318
AsuHPI GGTGA 3 cut(s) 397, 458, 497
AvaI CYCGRG 1 cut(s) 696
BamHI GGATCC 2 cut(s) 197, 667
BauI CACGAG 1 cut(s) 650
BbrPI CACGTG 1 cut(s) 294
BbsI GAAGAC 3 cut(s) 23, 543, 615
BbvI GCAGC 1 cut(s) 314
BccI CCATC 2 cut(s) 308, 487
BciT130I CCWGG 2 cut(s) 520, 614
BfaI CTAG 2 cut(s) 438, 473
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 520, 614
BmeT110I CYCGRG 1 cut(s) 696
BmiI GGNNCC 2 cut(s) 199, 669
BmrFI CCNGG 2 cut(s) 520, 614
BmsI GCATC 2 cut(s) 13, 397
BpiI GAAGAC 3 cut(s) 23, 543, 615
BsaAI YACGTR 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 59, 519
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 443
Bse1I ACTGG 2 cut(s) 25, 599
Bse3DI GCAATG 1 cut(s) 448
BseAI TCCGGA 1 cut(s) 133
BseBI CCWGG 2 cut(s) 520, 614
BseDI CCNNGG 2 cut(s) 59, 519
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 194, 443
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 2 cut(s) 25, 599
BseRI GAGGAG 1 cut(s) 604
BseXI GCAGC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 2 cut(s) 194, 443
BsoBI CYCGRG 1 cut(s) 696
Bsp13I TCCGGA 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 503
Bsp143I GATC 7 cut(s) 10, 79, 136, 197, 450, 667, 683
BspCNI CTCAG 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 133
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 2 cut(s) 199, 669
BspPI GGATC 7 cut(s) 87, 144, 192, 205, 445, 662, 675
BsrDI GCAATG 1 cut(s) 448
BsrGI TGTACA 1 cut(s) 503
BsrI ACTGG 2 cut(s) 25, 599
BssECI CCNNGG 2 cut(s) 59, 519
BssMI GATC 7 cut(s) 10, 79, 136, 197, 450, 667, 683
BssSI CACGAG 1 cut(s) 650
Bst2BI CACGAG 1 cut(s) 650
Bst2UI CCWGG 2 cut(s) 520, 614
Bst4CI ACNGT 5 cut(s) 227, 343, 485, 635, 715
BstAUI TGTACA 1 cut(s) 503
BstBAI YACGTR 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 7 cut(s) 13, 82, 139, 200, 453, 670, 686
BstMBI GATC 7 cut(s) 10, 79, 136, 197, 450, 667, 683
BstNI CCWGG 2 cut(s) 520, 614
BstSCI CCNGG 2 cut(s) 518, 612
BstV1I GCAGC 1 cut(s) 314
BstV2I GAAGAC 3 cut(s) 23, 543, 615
BstX2I RGATCY 3 cut(s) 197, 450, 667
BstYI RGATCY 3 cut(s) 197, 450, 667
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 281, 711
Cac8I GCNNGC 1 cut(s) 299
CciI TCATGA 1 cut(s) 604
CsiI ACCWGGT 1 cut(s) 612
Csp6I GTAC 4 cut(s) 223, 481, 504, 693
CviAII CATG 3 cut(s) 166, 565, 605
CviJI RGCY 3 cut(s) 43, 301, 739
CviKI_1 RGCY 3 cut(s) 43, 301, 739
CviQI GTAC 4 cut(s) 223, 481, 504, 693
DdeI CTNAG 1 cut(s) 284
DpnI GATC 7 cut(s) 12, 81, 138, 199, 452, 669, 685
DpnII GATC 7 cut(s) 10, 79, 136, 197, 450, 667, 683
Eco32I GATATC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 318
EcoRII CCWGG 2 cut(s) 518, 612
EcoRV GATATC 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 169, 568, 608
FalI AAGNNNNNCTT 1 cut(s) 723
FatI CATG 3 cut(s) 165, 564, 604
FauNDI CATATG 2 cut(s) 36, 677
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 2 cut(s) 438, 473
GluI GCNGC 1 cut(s) 328
HapII CCGG 1 cut(s) 134
Hin1II CATG 3 cut(s) 169, 568, 608
HinfI GANTC 3 cut(s) 152, 308, 377
HpaII CCGG 1 cut(s) 134
HphI GGTGA 3 cut(s) 397, 458, 497
Hpy166II GTNNAC 4 cut(s) 32, 230, 399, 506
Hpy188I TCNGA 3 cut(s) 15, 313, 535
Hpy188III TCNNGA 5 cut(s) 8, 134, 374, 605, 650
Hpy8I GTNNAC 4 cut(s) 32, 230, 399, 506
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 3 cut(s) 476, 658, 719
HpyCH4III ACNGT 5 cut(s) 227, 343, 485, 635, 715
HpyCH4IV ACGT 2 cut(s) 249, 293
HpyCH4V TGCA 5 cut(s) 4, 169, 291, 297, 681
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 2 cut(s) 249, 293
Hsp92II CATG 3 cut(s) 169, 568, 608
Kpn2I TCCGGA 1 cut(s) 133
Kzo9I GATC 7 cut(s) 10, 79, 136, 197, 450, 667, 683
Lsp1109I GCAGC 1 cut(s) 314
LweI GCATC 2 cut(s) 13, 397
MabI ACCWGGT 1 cut(s) 612
MaeI CTAG 2 cut(s) 438, 473
MaeII ACGT 2 cut(s) 249, 293
MaeIII GTNAC 3 cut(s) 208, 250, 385
MalI GATC 7 cut(s) 12, 81, 138, 199, 452, 669, 685
MboI GATC 7 cut(s) 10, 79, 136, 197, 450, 667, 683
MboII GAAGA 3 cut(s) 28, 548, 620
MflI RGATCY 3 cut(s) 197, 450, 667
MluCI AATT 2 cut(s) 141, 318
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 45, 291
MnlI CCTC 6 cut(s) 33, 43, 69, 211, 561, 582
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 133
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 654
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 520, 614
MvaI CCWGG 2 cut(s) 520, 614
NdeI CATATG 2 cut(s) 36, 677
NdeII GATC 7 cut(s) 10, 79, 136, 197, 450, 667, 683
NlaIII CATG 3 cut(s) 169, 568, 608
NlaIV GGNNCC 2 cut(s) 199, 669
NmuCI GTSAC 1 cut(s) 385
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 696
PagI TCATGA 1 cut(s) 604
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PfeI GAWTC 2 cut(s) 152, 377
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 316
PmaCI CACGTG 1 cut(s) 294
PmlI CACGTG 1 cut(s) 294
PpsI GAGTC 1 cut(s) 316
Ppu21I YACGTR 1 cut(s) 294
Psp1406I AACGTT 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 518, 612
PspCI CACGTG 1 cut(s) 294
PspGI CCWGG 2 cut(s) 518, 612
PspN4I GGNNCC 2 cut(s) 199, 669
PspXI VCTCGAGB 1 cut(s) 696
PsuI RGATCY 3 cut(s) 197, 450, 667
RsaI GTAC 4 cut(s) 224, 482, 505, 694
RsaNI GTAC 4 cut(s) 223, 481, 504, 693
RseI CAYNNNNRTG 1 cut(s) 654
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 7 cut(s) 10, 79, 136, 197, 450, 667, 683
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 520, 614
SetI ASST 9 cut(s) 54, 252, 296, 303, 398, 439, 482, 618, 694
SexAI ACCWGGT 1 cut(s) 612
SfaNI GCATC 2 cut(s) 13, 397
Sfr274I CTCGAG 1 cut(s) 696
SlaI CTCGAG 1 cut(s) 696
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 696
SmoI CTYRAG 1 cut(s) 696
Sse9I AATT 2 cut(s) 141, 318
SspMI CTAG 2 cut(s) 438, 473
StyD4I CCNGG 2 cut(s) 518, 612
TaaI ACNGT 5 cut(s) 227, 343, 485, 635, 715
TaiI ACGT 2 cut(s) 252, 296
TaqI TCGA 3 cut(s) 82, 697, 720
TasI AATT 2 cut(s) 141, 318
TatI WGTACW 1 cut(s) 503
TfiI GAWTC 2 cut(s) 152, 377
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 2 cut(s) 288, 718
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 1 cut(s) 327
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 8 cut(s) 103, 154, 275, 362, 564, 593, 621, 738
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 2 cut(s) 288, 718
XapI RAATTY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XhoI CTCGAG 1 cut(s) 696
XspI CTAG 2 cut(s) 438, 473
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.