Rroxscaffold_5G00350850

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0018680
Physical Location & Seq
Forward (+)
25512431 .. 25523108
10678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350850.1

Sequence Viewer

Length: 570 bp
ATGGGTAAACATATGAGGCTTTATGAGGTGTTGCCTCGGTTGGATAAGACAATTGATCGAATACGGGAAAGGGTGTTGTATGATGATTTCATTTCTATCAACGCAAGTCCAGTTATTGGCGACCACATGCGTTTATTGCAAGAGCGGTATTTCTATTTGATACGGGAACAAATTAGGTGGACTAAAGATGCGACGACTACGAATATCAAAATCCGACCTAGCAACGGTGAGATCCCCGACTATTCCCTTCGCCTGGCAAGGTACGGTGAGATGATGGCAGAATGTACACAAACTTGTTTCAGGGCGTCATTTTTCGAAGACACTTACTATGAAACTATTGAATCTATGACGCGTATGTCTATTAGGGCGAGGAGATATCCAGTTCACGAAGACCAAGATGATACAACAAATAACGGTCTTCACGGACTTCACGAGAATGTTGTGAAGGATCGTACCATTTGCAGATCAAAAGGTACTCAAGCAAATCCCCCAACTGTTGTCGATGATGGCAAAGCTGGGCTTACCAAAGGCGCTATTAAATGTGGTAAATGTCACCAACCGGGCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

189

Amino Acids

21.93

Weight (kDa)

8.57

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018680)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000894.1_g000067
rosa_roxburghii Rroxscaffold_5G00350850
rosa_samantha Rh1DG303600 Rh2AG311300 Rh2BG305400 Rh2BG394200 Rh2DG335300 Rh3BG310800 Rh7CG048700
rosa_wichuraiana Rw2G031690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 145
AccII CGCG 1 cut(s) 352
AciI CCGC 1 cut(s) 145
AclWI GGATC 2 cut(s) 226, 456
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 4 cut(s) 263, 286, 454, 475
AfiI CCNNNNNNNGG 3 cut(s) 116, 224, 253
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
AlwI GGATC 2 cut(s) 226, 456
AoxI GGCC 1 cut(s) 562
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 562
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 3 cut(s) 239, 278, 545
AsuII TTCGAA 1 cut(s) 315
BauI CACGAG 1 cut(s) 431
BbsI GAAGAC 3 cut(s) 324, 396, 410
BccI CCATC 2 cut(s) 268, 500
BciT130I CCWGG 1 cut(s) 254
BcnI CCSGG 1 cut(s) 561
BfaI CTAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 534
Bme1390I CCNGG 2 cut(s) 254, 561
BmgT120I GGNCC 1 cut(s) 562
BmrFI CCNGG 2 cut(s) 254, 561
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 3 cut(s) 324, 396, 410
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 462
BpuMI CCSGG 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 224, 253
Bse1I ACTGG 2 cut(s) 110, 380
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 35
BseLI CCNNNNNNNGG 3 cut(s) 116, 224, 253
BseNI ACTGG 2 cut(s) 110, 380
BseRI GAGGAG 1 cut(s) 385
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 1 cut(s) 564
BsiSI CCGG 1 cut(s) 560
BslI CCNNNNNNNGG 3 cut(s) 116, 224, 253
BsnI GGCC 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 315
Bsp1407I TGTACA 1 cut(s) 284
Bsp143I GATC 4 cut(s) 55, 231, 448, 464
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 564
BspFNI CGCG 1 cut(s) 352
BspPI GGATC 2 cut(s) 226, 456
BspT104I TTCGAA 1 cut(s) 315
BsrBI CCGCTC 1 cut(s) 145
BsrGI TGTACA 1 cut(s) 284
BsrI ACTGG 2 cut(s) 110, 380
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 4 cut(s) 55, 231, 448, 464
BssNI GRCGYC 1 cut(s) 305
BssSI CACGAG 1 cut(s) 431
Bst2BI CACGAG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 4 cut(s) 227, 266, 416, 496
BstACI GRCGYC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 284
BstBI TTCGAA 1 cut(s) 315
BstFNI CGCG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 4 cut(s) 58, 234, 451, 467
BstMBI GATC 4 cut(s) 55, 231, 448, 464
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 252, 559
BstUI CGCG 1 cut(s) 352
BstV2I GAAGAC 3 cut(s) 324, 396, 410
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 1 cut(s) 564
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 1 cut(s) 562
CseI GACGC 2 cut(s) 294, 358
Csp6I GTAC 4 cut(s) 262, 285, 453, 474
CspCI CAANNNNNGTGG 2 cut(s) 158, 193
CviAII CATG 1 cut(s) 127
CviJI RGCY 4 cut(s) 19, 515, 520, 564
CviKI_1 RGCY 4 cut(s) 19, 515, 520, 564
CviQI GTAC 4 cut(s) 262, 285, 453, 474
DpnI GATC 4 cut(s) 57, 233, 450, 466
DpnII GATC 4 cut(s) 55, 231, 448, 464
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 252
EcoRV GATATC 1 cut(s) 377
FaeI CATG 1 cut(s) 130
FaiI YATR 8 cut(s) 12, 14, 24, 81, 128, 330, 347, 356
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FatI CATG 1 cut(s) 126
FauNDI CATATG 1 cut(s) 12
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 532
GsaI CCCAGC 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 1 cut(s) 564
HapII CCGG 1 cut(s) 560
HgaI GACGC 2 cut(s) 294, 358
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 560
HphI GGTGA 3 cut(s) 239, 278, 545
Hpy166II GTNNAC 4 cut(s) 8, 180, 287, 385
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 2 cut(s) 386, 431
Hpy8I GTNNAC 4 cut(s) 8, 180, 287, 385
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 257, 439
HpyCH4III ACNGT 4 cut(s) 227, 266, 416, 496
HpyCH4V TGCA 2 cut(s) 139, 462
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 4 cut(s) 55, 231, 448, 464
LpnPI CCDG 6 cut(s) 123, 239, 266, 286, 393, 501
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 551
MalI GATC 4 cut(s) 57, 233, 450, 466
MbiI CCGCTC 1 cut(s) 145
MboI GATC 4 cut(s) 55, 231, 448, 464
MboII GAAGA 3 cut(s) 329, 401, 410
MfeI CAATTG 1 cut(s) 51
MflI RGATCY 1 cut(s) 231
MluCI AATT 2 cut(s) 51, 171
MluI ACGCGT 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 21, 238
MnlI CCTC 4 cut(s) 9, 19, 45, 363
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 435
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 2 cut(s) 254, 561
MunI CAATTG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 136
NciI CCSGG 1 cut(s) 561
NdeI CATATG 1 cut(s) 12
NdeII GATC 4 cut(s) 55, 231, 448, 464
NlaIII CATG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 551
NspI RCATGY 1 cut(s) 130
NspV TTCGAA 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 252
PspPI GGNCC 1 cut(s) 562
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 4 cut(s) 263, 286, 454, 475
RsaNI GTAC 4 cut(s) 262, 285, 453, 474
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 1 cut(s) 537
Sau3AI GATC 4 cut(s) 55, 231, 448, 464
Sau96I GGNCC 1 cut(s) 562
ScrFI CCNGG 2 cut(s) 254, 561
SetI ASST 6 cut(s) 30, 179, 220, 263, 475, 517
SfaNI GCATC 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
Sse9I AATT 2 cut(s) 51, 171
SsiI CCGC 1 cut(s) 145
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 252, 559
TaaI ACNGT 4 cut(s) 227, 266, 416, 496
TaqI TCGA 3 cut(s) 58, 315, 501
TasI AATT 2 cut(s) 51, 171
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TseFI GTSAC 1 cut(s) 551
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 2 cut(s) 79, 345
TspGWI ACGGA 1 cut(s) 438
Van91I CCANNNNNTGG 1 cut(s) 116
XceI RCATGY 1 cut(s) 130
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.