Rh1DG303600

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
53017379 .. 53017720
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG303600.1

Sequence Viewer

Length: 342 bp
ATGAAAGTGAAGCAGATAACAGTGTTTCCTGAGTCTTTGGTGACAAAGAGGTGGACTAAAGATGCGACGACTATCAATGAAGAAACCCGACCTAGCAATGGAGTGATTTCCGACAATTCACTTCGCCTGGCAAGGTACGGTGAGATGATGGCAGAATGTACGCAGACTTGTTTCAGGGCGTCATTTTCCGACGACGCTTACTATGAAACAATTGAATCCATGAGGCGTATGTCTATTAGGGCGAGGAGATATCCAGTTCATGAAGACCAAGAGGATACTGCACATAACAGTCTGGACGGACTTCACGAGAATGTTGTCAAGGATCCTAAGATTTGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

13.08

Weight (kDa)

5.91

Isoelectric Point (pI)

58.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018680)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 317, 330
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 2 cut(s) 137, 160
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 126
AlwI GGATC 2 cut(s) 317, 330
AsuHPI GGTGA 2 cut(s) 52, 152
BamHI GGATCC 1 cut(s) 322
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 270
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 128
BciVI GTATCC 1 cut(s) 268
BfaI CTAG 1 cut(s) 93
BfuI GTATCC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 98
Bsp143I GATC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 324
BspPI GGATC 2 cut(s) 317, 330
BsrDI GCAATG 1 cut(s) 103
BsrI ACTGG 1 cut(s) 254
BssMI GATC 1 cut(s) 322
BssNI GRCGYC 1 cut(s) 179
BssSI CACGAG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 22, 140, 290
BstACI GRCGYC 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 30, 327
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuI GTATCC 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 27
CciI TCATGA 1 cut(s) 259
CseI GACGC 2 cut(s) 168, 203
Csp6I GTAC 2 cut(s) 136, 159
CviAII CATG 2 cut(s) 220, 260
CviQI GTAC 2 cut(s) 136, 159
DdeI CTNAG 2 cut(s) 30, 327
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eco32I GATATC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 126
EcoRV GATATC 1 cut(s) 251
FaeI CATG 2 cut(s) 223, 263
FaiI YATR 7 cut(s) 204, 221, 230, 261, 285, 338, 340
FatI CATG 2 cut(s) 219, 259
FauNDI CATATG 1 cut(s) 338
FspBI CTAG 1 cut(s) 93
HgaI GACGC 2 cut(s) 168, 203
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 2 cut(s) 223, 263
HinfI GANTC 2 cut(s) 32, 215
HphI GGTGA 2 cut(s) 52, 152
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 112, 190
Hpy188III TCNNGA 4 cut(s) 29, 260, 293, 305
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 3 cut(s) 70, 194, 197
HpyCH4III ACNGT 3 cut(s) 22, 140, 290
HpyCH4V TGCA 2 cut(s) 281, 336
HpyF3I CTNAG 2 cut(s) 30, 327
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 2 cut(s) 223, 263
Kzo9I GATC 1 cut(s) 322
LpnPI CCDG 6 cut(s) 42, 113, 140, 160, 267, 278
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 2 cut(s) 92, 275
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 322
MluCI AATT 2 cut(s) 115, 210
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 2 cut(s) 135, 213
MnlI CCTC 4 cut(s) 42, 216, 237, 265
MslI CAYNNNNRTG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 338
NdeII GATC 1 cut(s) 322
NlaIII CATG 2 cut(s) 223, 263
NlaIV GGNNCC 1 cut(s) 324
NmuCI GTSAC 1 cut(s) 40
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 2 cut(s) 137, 160
RsaNI GTAC 2 cut(s) 136, 159
RseI CAYNNNNRTG 1 cut(s) 309
Sau3AI GATC 1 cut(s) 322
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 128
SetI ASST 3 cut(s) 53, 94, 137
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 2 cut(s) 115, 210
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 22, 140, 290
TasI AATT 2 cut(s) 115, 210
TfiI GAWTC 1 cut(s) 215
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 5 cut(s) 17, 93, 219, 248, 276
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 27
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.