Rw2G031690

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018680
Physical Location & Seq
Forward (+)
51948310 .. 51949409
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031690.1

Sequence Viewer

Length: 1068 bp
ATGCATCGTGATCTGAAGACTGGAATGGGTAAACATATGAGGCTTTATGAGGTGTTGCCTCAGTTGGATAAGACAATGGATCGAATACGGGAAAGGGTATTGTTTGATGATTTCATTTCTATCAACGCAAGTCCGCAAATTGGGGAAAAATTTACACATGACATTTTCCTTCTGATACAGGATCAAATTAAGTTTGAATCCCGTTTTTTCATGCAAGATGAGTTTCTTTTTCCTGCTTTGGGATCCTCAATAGTCACTCTTACGCAGTACGGTAAACCATACAGGAAGTGGAACGTTACATTTATGAACAACAATGACAACCCCACACTGAGTTGCACGTGCAAGCTGTTTGAGTCGGATGGAATTCCTTGTTGTCATATATTTACTGTGATGAAAGTGAAGCAGATAATAGCGTTTCCAGATTCTTTGGTGAGAAACAGGTGGACTAAAGATGCGACGACTACAAATGTGAAAACCCTACCTTGCAATGGTGAGATCCCCGACCATTCCCTTCGCCTAGCAAGGTACGGTGAGATGATGGCAGAATGTACACAGACTTGTTCCTGGGTGTCATTTTCCGAAGACGGTTACTATGAAACTATTGAATCCATGAGGCGTATGTCTATTAGGGCGAGGAGATATCCAGTTCATGAAGACCAGGTTGATACAACACATAACAGTCTTTACGGACTTCACGAGAATGTTGTGAAGGATCCTACCATATGCAGATCAAAAGGTACTCGAGCAAATCCCCCCACTGTTGTCGATGAAGGCAAAGCAGGGCTTACCAAAGGAGCTATTAAATGTGGTAAATGTCACCAACCGGGCCACAATATGCGAACATGCGAGAAGGCCATTAATGATCCGAAAGGATGGGGCAAATCACATCGTGACAATGTGCTATTTGATTCCTCCGCTAACCACACTTGTCTCAGAGAGGAGGAATACGAGACTATTGGTAGTAGCCATAATACTAATTATTTGCTGCACCACAATAAAGAAGCCCGGGATTTTGCCTTTTTTGGGAGTTATGACAACATAATACCCTCTATGTCCACCTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

355

Amino Acids

40.8

Weight (kDa)

7.59

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 100 - 131 2e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018680)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000894.1_g000067
rosa_roxburghii Rroxscaffold_5G00350850
rosa_samantha Rh1DG303600 Rh2AG311300 Rh2BG305400 Rh2BG394200 Rh2DG335300 Rh3BG310800 Rh7CG048700
rosa_wichuraiana Rw2G031690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 134, 915
AclI AACGTT 1 cut(s) 294
AclWI GGATC 8 cut(s) 87, 189, 237, 250, 490, 707, 720, 857
AcsI RAATTY 2 cut(s) 149, 363
AcuI CTGAAG 1 cut(s) 35
AcvI CACGTG 1 cut(s) 339
AdeI CACNNNGTG 1 cut(s) 890
AfaI GTAC 4 cut(s) 269, 527, 550, 739
AfiI CCNNNNNNNGG 4 cut(s) 140, 239, 488, 1023
AgsI TTSAA 2 cut(s) 197, 605
AjnI CCWGG 2 cut(s) 563, 657
AluBI AGCT 2 cut(s) 346, 797
AluI AGCT 2 cut(s) 346, 797
Alw26I GTCTC 2 cut(s) 935, 944
AlwI GGATC 8 cut(s) 87, 189, 237, 250, 490, 707, 720, 857
Ama87I CYCGRG 2 cut(s) 741, 1005
AoxI GGCC 2 cut(s) 826, 852
ApeKI GCWGC 1 cut(s) 985
ApoI RAATTY 2 cut(s) 149, 363
AseI ATTAAT 1 cut(s) 858
AspS9I GGNCC 1 cut(s) 826
AsuC2I CCSGG 3 cut(s) 825, 1006, 1007
AsuHPI GGTGA 4 cut(s) 442, 503, 542, 809
AvaI CYCGRG 2 cut(s) 741, 1005
BamHI GGATCC 2 cut(s) 242, 712
BauI CACGAG 1 cut(s) 695
BbrPI CACGTG 1 cut(s) 339
BbsI GAAGAC 3 cut(s) 23, 588, 660
BbvI GCAGC 1 cut(s) 972
BccI CCATC 3 cut(s) 353, 532, 867
BciT130I CCWGG 2 cut(s) 565, 659
BcnI CCSGG 3 cut(s) 825, 1006, 1007
BcoDI GTCTC 2 cut(s) 935, 944
BfaI CTAG 1 cut(s) 518
BisI GCNGC 1 cut(s) 986
BlsI GCNGC 1 cut(s) 987
Bme1390I CCNGG 5 cut(s) 565, 659, 825, 1006, 1007
BmeT110I CYCGRG 2 cut(s) 741, 1005
BmgT120I GGNCC 1 cut(s) 826
BmiI GGNNCC 2 cut(s) 244, 714
BmrFI CCNGG 5 cut(s) 565, 659, 825, 1006, 1007
BmsI GCATC 2 cut(s) 13, 442
BpiI GAAGAC 3 cut(s) 23, 588, 660
BpmI CTGGAG 1 cut(s) 1045
BpuMI CCSGG 3 cut(s) 825, 1006, 1007
BsaAI YACGTR 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 564, 1005
Bsc4I CCNNNNNNNGG 4 cut(s) 140, 239, 488, 1023
Bse1I ACTGG 2 cut(s) 25, 644
Bse3DI GCAATG 1 cut(s) 493
BseBI CCWGG 2 cut(s) 565, 659
BseDI CCNNGG 2 cut(s) 564, 1005
BseGI GGATG 2 cut(s) 364, 878
BseLI CCNNNNNNNGG 4 cut(s) 140, 239, 488, 1023
BseMI GCAATG 1 cut(s) 493
BseMII CTCAG 3 cut(s) 74, 320, 946
BseNI ACTGG 2 cut(s) 25, 644
BseRI GAGGAG 2 cut(s) 649, 953
BseXI GCAGC 1 cut(s) 972
BsgI GTGCAG 1 cut(s) 971
BshFI GGCC 2 cut(s) 828, 854
BsiHKCI CYCGRG 2 cut(s) 741, 1005
BsiSI CCGG 2 cut(s) 824, 1006
BslI CCNNNNNNNGG 4 cut(s) 140, 239, 488, 1023
BsmAI GTCTC 2 cut(s) 935, 944
BsnI GGCC 2 cut(s) 828, 854
BsoBI CYCGRG 2 cut(s) 741, 1005
Bsp1407I TGTACA 1 cut(s) 548
Bsp143I GATC 8 cut(s) 10, 79, 181, 242, 495, 712, 728, 862
BspACI CCGC 2 cut(s) 134, 915
BspANI GGCC 2 cut(s) 828, 854
BspCNI CTCAG 3 cut(s) 73, 321, 945
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 244, 714
BspPI GGATC 8 cut(s) 87, 189, 237, 250, 490, 707, 720, 857
BsrDI GCAATG 1 cut(s) 493
BsrGI TGTACA 1 cut(s) 548
BsrI ACTGG 2 cut(s) 25, 644
BssECI CCNNGG 2 cut(s) 564, 1005
BssMI GATC 8 cut(s) 10, 79, 181, 242, 495, 712, 728, 862
BssSI CACGAG 1 cut(s) 695
Bst2BI CACGAG 1 cut(s) 695
Bst2UI CCWGG 2 cut(s) 565, 659
Bst4CI ACNGT 6 cut(s) 272, 388, 530, 587, 680, 760
BstAUI TGTACA 1 cut(s) 548
BstBAI YACGTR 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 60, 329, 932
BstF5I GGATG 2 cut(s) 364, 878
BstKTI GATC 8 cut(s) 13, 82, 184, 245, 498, 715, 731, 865
BstMAI GTCTC 2 cut(s) 935, 944
BstMBI GATC 8 cut(s) 10, 79, 181, 242, 495, 712, 728, 862
BstNI CCWGG 2 cut(s) 565, 659
BstNSI RCATGY 1 cut(s) 846
BstSCI CCNGG 5 cut(s) 563, 657, 823, 1004, 1005
BstV1I GCAGC 1 cut(s) 972
BstV2I GAAGAC 3 cut(s) 23, 588, 660
BstX2I RGATCY 3 cut(s) 242, 495, 712
BstYI RGATCY 3 cut(s) 242, 495, 712
BsuRI GGCC 2 cut(s) 828, 854
BtsCI GGATG 2 cut(s) 364, 878
BtsIMutI CAGTG 2 cut(s) 326, 756
Cac8I GCNNGC 1 cut(s) 344
CciI TCATGA 1 cut(s) 649
Cfr13I GGNCC 1 cut(s) 826
Cfr9I CCCGGG 1 cut(s) 1005
CsiI ACCWGGT 1 cut(s) 657
Csp6I GTAC 4 cut(s) 268, 526, 549, 738
CviAII CATG 5 cut(s) 158, 211, 610, 650, 843
CviJI RGCY 8 cut(s) 43, 346, 784, 797, 828, 854, 966, 1004
CviKI_1 RGCY 8 cut(s) 43, 346, 784, 797, 828, 854, 966, 1004
CviQI GTAC 4 cut(s) 268, 526, 549, 738
DdeI CTNAG 3 cut(s) 60, 329, 932
DpnI GATC 8 cut(s) 12, 81, 183, 244, 497, 714, 730, 864
DpnII GATC 8 cut(s) 10, 79, 181, 242, 495, 712, 728, 862
DraIII CACNNNGTG 1 cut(s) 890
Eco32I GATATC 1 cut(s) 641
Eco57I CTGAAG 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 741, 1005
EcoRI GAATTC 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 563, 657
EcoRV GATATC 1 cut(s) 641
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 5 cut(s) 161, 214, 613, 653, 846
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FatI CATG 5 cut(s) 157, 210, 609, 649, 842
FauNDI CATATG 2 cut(s) 36, 722
Fnu4HI GCNGC 1 cut(s) 986
FokI GGATG 2 cut(s) 371, 885
Fsp4HI GCNGC 1 cut(s) 986
FspBI CTAG 1 cut(s) 518
GluI GCNGC 1 cut(s) 986
GsuI CTGGAG 1 cut(s) 1045
HaeIII GGCC 2 cut(s) 828, 854
HapII CCGG 2 cut(s) 824, 1006
Hin1II CATG 5 cut(s) 161, 214, 613, 653, 846
HinfI GANTC 5 cut(s) 197, 353, 422, 605, 908
HpaII CCGG 2 cut(s) 824, 1006
HphI GGTGA 4 cut(s) 442, 503, 542, 809
Hpy166II GTNNAC 5 cut(s) 32, 275, 444, 551, 1056
Hpy188I TCNGA 6 cut(s) 15, 174, 358, 580, 867, 935
Hpy188III TCNNGA 6 cut(s) 8, 419, 650, 695, 890, 1062
Hpy8I GTNNAC 5 cut(s) 32, 275, 444, 551, 1056
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 5 cut(s) 179, 521, 703, 764, 844
HpyCH4III ACNGT 6 cut(s) 272, 388, 530, 587, 680, 760
HpyCH4IV ACGT 2 cut(s) 294, 338
HpyCH4V TGCA 7 cut(s) 4, 214, 336, 342, 486, 726, 988
HpyF3I CTNAG 3 cut(s) 60, 329, 932
HpySE526I ACGT 2 cut(s) 294, 338
Hsp92II CATG 5 cut(s) 161, 214, 613, 653, 846
Kzo9I GATC 8 cut(s) 10, 79, 181, 242, 495, 712, 728, 862
LmnI GCTCC 1 cut(s) 794
Lsp1109I GCAGC 1 cut(s) 972
LweI GCATC 2 cut(s) 13, 442
MabI ACCWGGT 1 cut(s) 657
MaeI CTAG 1 cut(s) 518
MaeII ACGT 2 cut(s) 294, 338
MaeIII GTNAC 5 cut(s) 253, 295, 587, 815, 890
MalI GATC 8 cut(s) 12, 81, 183, 244, 497, 714, 730, 864
MboI GATC 8 cut(s) 10, 79, 181, 242, 495, 712, 728, 862
MboII GAAGA 3 cut(s) 28, 593, 665
MflI RGATCY 3 cut(s) 242, 495, 712
MluCI AATT 5 cut(s) 138, 149, 186, 363, 976
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 2 cut(s) 45, 336
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 189, 801, 858
MslI CAYNNNNRTG 1 cut(s) 699
MspI CCGG 2 cut(s) 824, 1006
MspR9I CCNGG 5 cut(s) 565, 659, 825, 1006, 1007
MvaI CCWGG 2 cut(s) 565, 659
NciI CCSGG 3 cut(s) 825, 1006, 1007
NdeI CATATG 2 cut(s) 36, 722
NdeII GATC 8 cut(s) 10, 79, 181, 242, 495, 712, 728, 862
NlaIII CATG 5 cut(s) 161, 214, 613, 653, 846
NlaIV GGNNCC 2 cut(s) 244, 714
NmuCI GTSAC 3 cut(s) 253, 815, 890
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 846
PaeR7I CTCGAG 1 cut(s) 741
PagI TCATGA 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 693
PfeI GAWTC 4 cut(s) 197, 422, 605, 908
PkrI GCNGC 1 cut(s) 987
PleI GAGTC 1 cut(s) 361
PmaCI CACGTG 1 cut(s) 339
PmlI CACGTG 1 cut(s) 339
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 858
Psp1406I AACGTT 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 563, 657
PspCI CACGTG 1 cut(s) 339
PspGI CCWGG 2 cut(s) 563, 657
PspN4I GGNNCC 2 cut(s) 244, 714
PspPI GGNCC 1 cut(s) 826
PspXI VCTCGAGB 1 cut(s) 741
PsuI RGATCY 3 cut(s) 242, 495, 712
RsaI GTAC 4 cut(s) 269, 527, 550, 739
RsaNI GTAC 4 cut(s) 268, 526, 549, 738
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 3 cut(s) 189, 801, 858
SatI GCNGC 1 cut(s) 986
Sau3AI GATC 8 cut(s) 10, 79, 181, 242, 495, 712, 728, 862
Sau96I GGNCC 1 cut(s) 826
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 5 cut(s) 565, 659, 825, 1006, 1007
SexAI ACCWGGT 1 cut(s) 657
SfaNI GCATC 2 cut(s) 13, 442
Sfr274I CTCGAG 1 cut(s) 741
SlaI CTCGAG 1 cut(s) 741
SmaI CCCGGG 1 cut(s) 1007
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 741
SmoI CTYRAG 1 cut(s) 741
Sse9I AATT 5 cut(s) 138, 149, 186, 363, 976
SsiI CCGC 2 cut(s) 134, 915
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 5 cut(s) 563, 657, 823, 1004, 1005
TaaI ACNGT 6 cut(s) 272, 388, 530, 587, 680, 760
TaiI ACGT 2 cut(s) 297, 341
TaqI TCGA 3 cut(s) 82, 742, 765
TasI AATT 5 cut(s) 138, 149, 186, 363, 976
TatI WGTACW 1 cut(s) 548
TfiI GAWTC 4 cut(s) 197, 422, 605, 908
Tru1I TTAA 3 cut(s) 189, 801, 858
Tru9I TTAA 3 cut(s) 189, 801, 858
TscAI CASTG 2 cut(s) 333, 763
TseFI GTSAC 3 cut(s) 253, 815, 890
TseI GCWGC 1 cut(s) 985
Tsp45I GTSAC 3 cut(s) 253, 815, 890
TspDTI ATGAA 8 cut(s) 103, 199, 320, 407, 609, 638, 666, 783
TspGWI ACGGA 1 cut(s) 702
TspMI CCCGGG 1 cut(s) 1005
TspRI CASTG 2 cut(s) 333, 763
VspI ATTAAT 1 cut(s) 858
XapI RAATTY 2 cut(s) 149, 363
XceI RCATGY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XhoI CTCGAG 1 cut(s) 741
XmaI CCCGGG 1 cut(s) 1005
XspI CTAG 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.