Rh2AG311300

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018680
Physical Location & Seq
Forward (+)
39763440 .. 39763898
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG311300.1

Sequence Viewer

Length: 459 bp
ATGAGGCGTATGTCTATTAGGGCGAGGAAATATCCAGTTCATGAAGACCAAGATGATACAACACATAACAGTCTTGACGGACTTCACGAGAATGTTATCAAGGATCCTACAATTTGCAAATCAAAAGGTACTCGAGCAAATCCCCCCACTGTTGTCGATGATGGCAAAGTATGGCTTACCAAAGGCGCTATTAGATGTGGTAAATGTCACCAACCGGGCCACAATATGCGAACGTGCGACAAGGCCACTAATGATGCCAAAGGATGGGGCAAATCACATAGTGATAATGTTGTTTTTGATTCATCCGCTGACCACACTAGTCCTGGAGAGGATGAATACGAGACTACTGGTAATAGCGATAATACTAATTCTTTGCTGCACCACAATGAAGAAGCCCAGGATTTTGCCTTTTTTGGGGAGTATGACAACATAATACCCTCTCTGTCCACCTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

152

Amino Acids

16.93

Weight (kDa)

5.8

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018680)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000894.1_g000067
rosa_roxburghii Rroxscaffold_5G00350850
rosa_samantha Rh1DG303600 Rh2AG311300 Rh2BG305400 Rh2BG394200 Rh2DG335300 Rh3BG310800 Rh7CG048700
rosa_wichuraiana Rw2G031690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 264
AciI CCGC 1 cut(s) 306
AclWI GGATC 2 cut(s) 98, 111
AdeI CACNNNGTG 1 cut(s) 281
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 264, 414
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 2 cut(s) 322, 396
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 2 cut(s) 98, 111
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 2 cut(s) 217, 243
ApeKI GCWGC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 132
BamHI GGATCC 1 cut(s) 103
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 363
BccI CCATC 2 cut(s) 155, 258
BciT130I CCWGG 2 cut(s) 324, 398
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 335
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 1 cut(s) 377
BlsI GCNGC 1 cut(s) 378
Bme1390I CCNGG 3 cut(s) 216, 324, 398
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 3 cut(s) 216, 324, 398
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 2 cut(s) 345, 436
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 396
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 414
Bse1I ACTGG 2 cut(s) 35, 352
BseBI CCWGG 2 cut(s) 324, 398
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 3 cut(s) 269, 302, 337
BseLI CCNNNNNNNGG 2 cut(s) 264, 414
BseNI ACTGG 2 cut(s) 35, 352
BseXI GCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 362
BshFI GGCC 2 cut(s) 219, 245
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 264, 414
BsmAI GTCTC 1 cut(s) 335
BsnI GGCC 2 cut(s) 219, 245
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 1 cut(s) 306
BspANI GGCC 2 cut(s) 219, 245
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 2 cut(s) 98, 111
BsrI ACTGG 2 cut(s) 35, 352
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 1 cut(s) 103
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 324, 398
Bst4CI ACNGT 2 cut(s) 71, 151
BstF5I GGATG 3 cut(s) 269, 302, 337
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 324, 398
BstSCI CCNGG 3 cut(s) 214, 322, 396
BstV1I GCAGC 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 2 cut(s) 219, 245
BtsCI GGATG 3 cut(s) 269, 302, 337
BtsIMutI CAGTG 1 cut(s) 147
CciI TCATGA 1 cut(s) 40
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 41
CviJI RGCY 4 cut(s) 175, 219, 245, 395
CviKI_1 RGCY 4 cut(s) 175, 219, 245, 395
CviQI GTAC 1 cut(s) 129
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 322, 396
FaeI CATG 1 cut(s) 44
FaiI YATR 8 cut(s) 11, 42, 66, 172, 227, 279, 423, 431
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 377
FokI GGATG 3 cut(s) 276, 289, 344
Fsp4HI GCNGC 1 cut(s) 377
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 377
GsuI CTGGAG 2 cut(s) 345, 436
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 2 cut(s) 219, 245
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 44
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 1 cut(s) 299
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 447
Hpy188III TCNNGA 4 cut(s) 41, 74, 86, 453
Hpy8I GTNNAC 1 cut(s) 447
HpyCH4III ACNGT 2 cut(s) 71, 151
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 117, 379
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 1 cut(s) 44
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 7 cut(s) 48, 228, 309, 333, 336, 383, 410
Lsp1109I GCAGC 1 cut(s) 363
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 2 cut(s) 56, 401
MflI RGATCY 1 cut(s) 103
MluCI AATT 2 cut(s) 111, 367
MnlI CCTC 3 cut(s) 18, 322, 448
MslI CAYNNNNRTG 2 cut(s) 90, 384
MspA1I CMGCKG 1 cut(s) 308
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 3 cut(s) 216, 324, 398
MvaI CCWGG 2 cut(s) 324, 398
NciI CCSGG 1 cut(s) 216
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 132
PagI TCATGA 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 322, 396
PspGI CCWGG 2 cut(s) 322, 396
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 217
PspXI VCTCGAGB 1 cut(s) 132
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 2 cut(s) 90, 384
SatI GCNGC 1 cut(s) 377
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 3 cut(s) 216, 324, 398
SetI ASST 3 cut(s) 130, 236, 452
SfaNI GCATC 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmiMI CAYNNNNRTG 2 cut(s) 90, 384
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 2 cut(s) 111, 367
SsiI CCGC 1 cut(s) 306
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 3 cut(s) 214, 322, 396
TaaI ACNGT 2 cut(s) 71, 151
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 133, 156
TasI AATT 2 cut(s) 111, 367
TfiI GAWTC 1 cut(s) 299
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 5 cut(s) 29, 57, 291, 348, 402
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 264
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.